Ann: CoreBio 0.4

[km]

Hi,
why are u reinventing the wheel when Biopython[1] is already existing ? is
there any specific reason u wanted to develop this CoreBio ? why dont u just
extend the existing BioPython package itself ?
regards,
KM
[1]http://biopython.org
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On 9/11/06, km <srikrishnamohan at gmail.com> wrote:
>
> On 11 Sep 2006 00:59:30 -0700, GavinCrooks at gmail.com
> <GavinCrooks at gmail.com> wrote:
> >
> > Announcing CoreBio 0.4
> > ------------------------
> > CoreBio home page:
> >     http://code.google.com/p/corebio/
> >
> > Download:
> >     http://corebio.googlecode.com/svn/dist/CoreBio-0.4.1.tar.gz
> >
> > CoreBio is an open source python library for bioinformatics and
> > computational biology, designed to be fast, compact, reliable and easy
> > to use. Currently, CoreBio includes code to store and manipulate
> > protein and DNA sequences, read and write many common biological
> > sequence formats, read blast reports and access other computational and
> > database resources.
> >
> > The CoreBio project welcomes additional suggestions, code and
> > participants.
> >
> > This release includes the following modules:
> >
> >     - data: Standard information used in computational biology.
> >     - matrix: Arrays indexed by alphabetic strings.
> >     - moremath: Various bits of useful math not in the standard
> >
> >                 python library.
> >     - resource: Access to programs, complex file formats and
> >                 databases
> >         - astral: ASTRAL dataset IO.
> >         - scop: SCOP: Structural Classification of Proteins IO.
> >         - stride: STRIDE: Protein secondary structure assignment
> >
> >                 from atomic coordinates.
> >     - seq: Alphabetic sequences and associated tools and data.
> >     - seq_io: Sequence file reading and writing.
> >         - array_io: Read and write arrays of sequence data.
> >         - clustal_io: Read the CLUSTAL sequence file format.
> >         - fasta_io: Read and write FASTA format.
> >         - genbank_io: Read GenBank flat files.
> >         - intelligenetics_io: Read IntelliGenetics format.
> >         - msf_io: Read sequence information in MSF format.
> >         - nbrf_io: Sequence IO for NBRF/PIR format.
> >         - nexus_io: Read the sequence data from a nexus file.
> >         - null_io: Null sequence IO.
> >         - phylip_io: Read Sequences in interleaved Phylip format.
> >         - plain_io: Read and write raw, unformatted sequence data.
> >         - stockholm_io: Read a STOCKHOLM format.
> >         - table_io: Read  tab delimited format.
> >     - ssearch_io: Parse sequence search analysis reports.
> >         - blastxml: Read BLAST XML output.
> >         - fasta: Read the output of a fasta similarity search.
> >     - transform: Transformations of Seqs (alphabetic sequences),
> >             including translation with a full suite of
> >             GeneticCode's.
> >
> >
> > Gavin Crooks and John Gilman
> >
> > --
> > http://mail.python.org/mailman/listinfo/python-list
> >
>
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