Ann: CoreBio 0.4

[km]

On 11 Sep 2006 00:59:30 -0700, GavinCrooks at gmail.com
<GavinCrooks at gmail.com> wrote:
>
> Announcing CoreBio 0.4
> ------------------------
> CoreBio home page:
>     http://code.google.com/p/corebio/
>
> Download:
>     http://corebio.googlecode.com/svn/dist/CoreBio-0.4.1.tar.gz
>
> CoreBio is an open source python library for bioinformatics and
> computational biology, designed to be fast, compact, reliable and easy
> to use. Currently, CoreBio includes code to store and manipulate
> protein and DNA sequences, read and write many common biological
> sequence formats, read blast reports and access other computational and
> database resources.
>
> The CoreBio project welcomes additional suggestions, code and
> participants.
>
> This release includes the following modules:
>
>     - data: Standard information used in computational biology.
>     - matrix: Arrays indexed by alphabetic strings.
>     - moremath: Various bits of useful math not in the standard
>
>                 python library.
>     - resource: Access to programs, complex file formats and
>                 databases
>         - astral: ASTRAL dataset IO.
>         - scop: SCOP: Structural Classification of Proteins IO.
>         - stride: STRIDE: Protein secondary structure assignment
>
>                 from atomic coordinates.
>     - seq: Alphabetic sequences and associated tools and data.
>     - seq_io: Sequence file reading and writing.
>         - array_io: Read and write arrays of sequence data.
>         - clustal_io: Read the CLUSTAL sequence file format.
>         - fasta_io: Read and write FASTA format.
>         - genbank_io: Read GenBank flat files.
>         - intelligenetics_io: Read IntelliGenetics format.
>         - msf_io: Read sequence information in MSF format.
>         - nbrf_io: Sequence IO for NBRF/PIR format.
>         - nexus_io: Read the sequence data from a nexus file.
>         - null_io: Null sequence IO.
>         - phylip_io: Read Sequences in interleaved Phylip format.
>         - plain_io: Read and write raw, unformatted sequence data.
>         - stockholm_io: Read a STOCKHOLM format.
>         - table_io: Read  tab delimited format.
>     - ssearch_io: Parse sequence search analysis reports.
>         - blastxml: Read BLAST XML output.
>         - fasta: Read the output of a fasta similarity search.
>     - transform: Transformations of Seqs (alphabetic sequences),
>             including translation with a full suite of
>             GeneticCode's.
>
>
> Gavin Crooks and John Gilman
>
> --
> http://mail.python.org/mailman/listinfo/python-list
>