Python Help!!!
Christof Winter
winter at biotec.tu-dresden.de
Wed Jun 13 14:09:55 EDT 2007
Elfine Peterson Tjio wrote:
> I'm trying to make a program that reads Fasta file and print it out. I used
> the SeqIO module and the results is:
>
> 'ATGGTCAT....SingleAlphabet()'
>
> For this purpose, should I use SeqIO or Fasta?
>
> for example:
>
> from Bio import SeqIO
>
> or
>
> from Bio import Fasta
>
> I want it to print every letter. Can anyone point me to the right direction.
> The newest biopython tutorial or book recommendation will be appreciated,
> too.
Dear Elfine:
The correct place for such a question is the BioPython discussion list at
biopython at lists.open-bio.org
You can subscribe to it here:
http://lists.open-bio.org/mailman/listinfo/biopython/
The newest BioPython tutorial (last updated 16 March 2007) can be found at
http://biopython.org/DIST/docs/tutorial/Tutorial.pdf
SeqIO and Fasta should both work fine. You could also try
>>> help(SeqIO)
>>> help(Fasta)
after your import for some further information.
Cheers,
Christof
More information about the Python-list
mailing list