Extract value and average
MRAB
python at mrabarnett.plus.com
Mon Jun 8 12:21:38 EDT 2009
Francesco Pietra wrote:
> I come 'naked', which is unusual and unfair. However, I find it
> difficult to give a correct start. The files consist, among other
> things, of a huge number of blocks of the type
>
>
> NSTEP = 1000 TIME(PS) = 152.000 TEMP(K) = 298.54 PRESS = 89.4
> Etot = -134965.2123 EKtot = 41282.1781 EPtot = -176247.3905
> BOND = 1771.7644 ANGLE = 6893.3003 DIHED = 4660.1650
> 1-4 NB = 1931.6071 1-4 EEL = 7799.8343 VDWAALS = 19047.1551
> EELEC = -218354.9960 EHBOND = 0.0000 RESTRAINT = 3.7793
> EAMBER (non-restraint) = -176251.1698
> EKCMT = 16048.2253 VIRIAL = 14755.8154 VOLUME = 669299.5681
> Density = 0.9896
> Ewald error estimate: 0.8252E-05
>
>
>
> (in attachment what surely is a correct reproduction of columns)
>
> I would like to extract values corresponding to variable DIHED (here
> 4660.1650) and getting also the mean value from all DIHED.
>
> Thanks for giving a possible attack
>
The first thing that comes to mind is a regular expression to extract
the DIHED values from the file contents, something like:
pattern = re.compile(r'DIHED\s+=\s+(\d+\.\d+)')
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