[Pythonmac-SIG] python2.4 crashes (bus error)
Chris Fonnesbeck
fonnesbeck at gmail.com
Tue Oct 25 04:24:43 CEST 2005
I am running Python 2.4.1 for some stochastic modeling, and am
encountering regular, reproducible bus errors. I loop through the
following code, in which a new model is instantiated and run:
# Loop over counties
for county in ('Brevard','Lee','Collier'):
# Loop over models
for model in models:
print 'Running',model,'for',county,'county'
# Initialize sampler
sampler = models[model](county)
# Run sampler
results = sampler.sample(iterations,burn=burn)
# Model output
sampler.export(results, model+county)
sampler.output(model+county)
# Goodness-of-fit
sampler.goodness(100,name=model+county)
However, during the second inside loop of any run, I get the following
error. Running any model in isolation works fine:
Date/Time: 2005-10-24 20:20:19.305 -0400
OS Version: 10.4.2 (Build 8C46)
Report Version: 3
Command: python
Path: /usr/bin/python
Parent: bash [2367]
Version: ??? (???)
PID: 4252
Thread: 0
Exception: EXC_BAD_ACCESS (0x0001)
Codes: KERN_PROTECTION_FAILURE (0x0002) at 0x00000000
Thread 0 Crashed:
0 <<00000000>> 0x00000000 0 + 0
1 flib.so 0x031b9690 array_from_pyobj + 1180
(fortranobject.c:689)
2 flib.so 0x031b4d4c f2py_rout_flib_poisson
+ 168 (flibmodule.c:843)
3 org.activestate.ActivePython24 0x1000c54c PyObject_Call + 48
(abstract.c:1752)
4 org.activestate.ActivePython24 0x1007cbe8 do_call + 136 (ceval.c:3755)
5 org.activestate.ActivePython24 0x1007c8e0 call_function + 1068
(ceval.c:3572)
6 org.activestate.ActivePython24 0x1007a344 PyEval_EvalFrame + 8888
(ceval.c:2163)
7 org.activestate.ActivePython24 0x1007b488 PyEval_EvalCodeEx +
2152 (ceval.c:2730)
8 org.activestate.ActivePython24 0x1007cad0 fast_function + 356
(ceval.c:3644)
9 org.activestate.ActivePython24 0x1007c8c8 call_function + 1044
(ceval.c:3568)
10 org.activestate.ActivePython24 0x1007a344 PyEval_EvalFrame + 8888
(ceval.c:2163)
11 org.activestate.ActivePython24 0x1007ca40 fast_function + 212
(ceval.c:3631)
12 org.activestate.ActivePython24 0x1007c8c8 call_function + 1044
(ceval.c:3568)
13 org.activestate.ActivePython24 0x1007a344 PyEval_EvalFrame + 8888
(ceval.c:2163)
14 org.activestate.ActivePython24 0x1007b488 PyEval_EvalCodeEx +
2152 (ceval.c:2730)
15 org.activestate.ActivePython24 0x1007cad0 fast_function + 356
(ceval.c:3644)
16 org.activestate.ActivePython24 0x1007c8c8 call_function + 1044
(ceval.c:3568)
17 org.activestate.ActivePython24 0x1007a344 PyEval_EvalFrame + 8888
(ceval.c:2163)
18 org.activestate.ActivePython24 0x1007b488 PyEval_EvalCodeEx +
2152 (ceval.c:2730)
19 org.activestate.ActivePython24 0x1007e87c PyEval_EvalCode + 48
(ceval.c:484)
20 org.activestate.ActivePython24 0x100b30e4 run_node + 76
(pythonrun.c:1265)
21 org.activestate.ActivePython24 0x100b2870 PyRun_SimpleFileExFlags
+ 592 (pythonrun.c:863)
22 org.activestate.ActivePython24 0x100bf84c Py_Main + 2604 (main.c:487)
23 python 0x000018d0 _start + 392 (crt.c:267)
24 dyld 0x8fe01048 _dyld_start + 60
Thread 1:
0 libSystem.B.dylib 0x9001efcc select + 12
1 com.tcltk.tklibrary 0x9b74ca20 NotifierThreadProc + 432
2 libSystem.B.dylib 0x9002c3b4 _pthread_body + 96
Thread 0 crashed with PPC Thread State 64:
srr0: 0x0000000000000000 srr1: 0x000000004200f030
vrsave: 0x0000000000000000
cr: 0x28422228 xer: 0x0000000000000003 lr:
0x00000000031ba0d4 ctr: 0x0000000000000000
r0: 0x0000000000000000 r1: 0x00000000bfffee70 r2:
0x0000000000000005 r3: 0x0000000009fe3560
r4: 0x0000000000000001 r5: 0x0000000008f27620 r6:
0x0000000000000001 r7: 0x0000000000000001
r8: 0x0000000000457238 r9: 0x0000000008f27628 r10:
0x0000000000456194 r11: 0x00000000004563c4
r12: 0x0000000000000000 r13: 0x0000000000000000 r14:
0x00000000003d2bf8 r15: 0x00000000003d2bcc
r16: 0x0000000000000000 r17: 0x0000000000000000 r18:
0x0000000000000000 r19: 0x000000001007a334
r20: 0x000000000030a764 r21: 0x0000000000000001 r22:
0x000000000ad44688 r23: 0x0000000000000000
r24: 0x0000000000457238 r25: 0x0000000000000002 r26:
0x0000000000000000 r27: 0x000000000ad446d8
r28: 0x000000000ad446d8 r29: 0x000000000ad44688 r30:
0x000000000ad44688 r31: 0x00000000031b9fc4
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0x91bbd000 - 0x91ca7fff com.apple.vImage
2.0 /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x91d3a000 - 0x91d5afff libmx.A.dylib /usr/lib/libmx.A.dylib
0x91d60000 - 0x91dc5fff libvMisc.dylib
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x91dcf000 - 0x91e61fff libvDSP.dylib
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
0x91e7b000 - 0x9240bfff libBLAS.dylib
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x92453000 - 0x92763fff libLAPACK.dylib
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
0x92790000 - 0x9281bfff com.apple.DesktopServices
1.3 /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
0x9285d000 - 0x92a86fff com.apple.Foundation 6.4.1
(567.12)
/System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x92ba4000 - 0x92c82fff libxml2.2.dylib /usr/lib/libxml2.2.dylib
0x92ca2000 - 0x92d90fff libiconv.2.dylib /usr/lib/libiconv.2.dylib
0x92e43000 - 0x92e43fff com.apple.Carbon 10.4
(???) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x92e45000 - 0x92e59fff com.apple.ImageCapture
3.0 /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x92e71000 - 0x92e81fff com.apple.speech.recognition.framework
3.4 /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x92e8d000 - 0x92ea2fff com.apple.securityhi 2.0
(203) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x92eb4000 - 0x92f3bfff com.apple.ink.framework 101.2
(69) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x92f4f000 - 0x92f5afff com.apple.help 1.0.3
(32) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x92f64000 - 0x92f91fff com.apple.openscripting 1.2.2
(???) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x92fab000 - 0x92fbbfff com.apple.print.framework.Print 4.0
(187) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x92fc7000 - 0x9302dfff com.apple.htmlrendering
1.1.2 /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRendering.framework/Versions/A/HTMLRendering
0x9305e000 - 0x930b0fff com.apple.NavigationServices 3.4.1
(3.4) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices
0x930dc000 - 0x930f9fff com.apple.audio.SoundManager
3.9 /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound
0x9310b000 - 0x93118fff com.apple.CommonPanels 1.2.2
(73) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x93121000 - 0x93431fff com.apple.HIToolbox 1.4.3
(???) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x94581000 - 0x94590fff libCGATS.A.dylib
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGATS.A.dylib
0x97308000 - 0x97327fff com.apple.vecLib 3.1.1 (vecLib
3.1.1) /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
0x9b61c000 - 0x9b6a5fff com.tcltk.tcllibrary
8.4.7 /System/Library/Frameworks/Tcl.framework/Versions/8.4/Tcl
0x9b6c3000 - 0x9b773fff com.tcltk.tklibrary
8.4.7 /System/Library/Frameworks/Tk.framework/Versions/8.4/Tk
Model: PowerBook5,6, BootROM 4.9.1f1, 1 processors, PowerPC G4 (1.2),
1.67 GHz, 1 GB
Graphics: ATI Mobility Radeon 9700, ATY,RV360M11, AGP, 128 MB
Memory Module: SODIMM0/J25LOWER, 512 MB, DDR SDRAM, PC2700U-25330
Memory Module: SODIMM1/J25UPPER, 512 MB, DDR SDRAM, PC2700U-25330
AirPort: AirPort Extreme, 400.17 (3.90.34.0.p11)
Modem: Jump, , V.92, Version 1.0,
Bluetooth: Version 1.6.0f2, 2 service, 0 devices, 0 incoming serial ports
Network Service: AirPort, AirPort, en1
PCI Card: TXN,PCIXXXX-00, cardbus, PC Card
Parallel ATA Device: MATSHITADVD-R UJ-835E,
Parallel ATA Device: FUJITSU MHT2080AH, 74.53 GB
USB Device: Bluetooth HCI, , Up to 12 Mb/sec, 500 mA
USB Device: Apple Internal Keyboard/Trackpad, Apple Computer, Up to 12
Mb/sec, 500 mA
--
Chris Fonnesbeck
Atlanta, GA
--
Chris Fonnesbeck
Atlanta, GA
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