plugin freeimage vs gdal on 0.5dev

[jip]

Hi Stéfan,
my numpy install seems to be broken:

In [1]: import numpy as np

In [2]: print np.__version__
1.3.0

In [3]: import numpy.compat
---------------------------------------------------------------------------
ImportError                               Traceback (most recent call
last)
/home/claire/Applications/ProjetPython/<ipython-input-3-2f9167a96fc7>
in <module>()
----> 1 import numpy.compat

ImportError: No module named compat

Thanks
JP

On 22 déc, 18:33, Stéfan van der Walt <ste... at sun.ac.za> wrote:
> Hi JP
>
> It seems like there is something wrong with your numpy.  Could you
> please execute the following:
>
> import numpy as np
> print np.__version__
> print np
>
> import numpy.compat
> print numpy.compat
>
> Thanks
> Stéfan
>
>
>
>
>
>
>
> On Thu, Dec 22, 2011 at 5:51 AM, jip <jeanpatrick.pomm... at gmail.com> wrote:
> > Dear all,
> > If I try to load a 12bits TIF image:
> > sk.io.use_plugin('freeimage', 'imread')
> > sk.io.use_plugin('matplotlib', 'imshow')
> > dapi=io.imread(path+CC+im)
>
> > I have the following message:
> > ** Message: pygobject_register_sinkfunc is deprecated (GstObject)
> > Traceback (most recent call last):
> >  File "/home/claire/Applications/ProjetPython/projet particule et
> > objet/Nuclei/QuantSpots-skimage.py", line 49, in <module>
> >    sk.io.use_plugin('freeimage', 'imread')
> >  File "/usr/local/lib/python2.6/dist-packages/scikits_image-0.5dev-
> > py2.6-linux-i686.egg/skimage/io/_plugins/plugin.py", line 128, in use
> >    _load(name)
> >  File "/usr/local/lib/python2.6/dist-packages/scikits_image-0.5dev-
> > py2.6-linux-i686.egg/skimage/io/_plugins/plugin.py", line 190, in
> > _load
> >    fromlist=[modname])
> >  File "/usr/local/lib/python2.6/dist-packages/scikits_image-0.5dev-
> > py2.6-linux-i686.egg/skimage/io/_plugins/freeimage_plugin.py", line 6,
> > in <module>
> >    from numpy.compat import asbytes
> > ImportError: No module named compat
>
> > What is that compat module? I have numpy 1.30 installed.
>
> > Anyway,I can load the image with gdal  (sk.io.use_plugin('gdal',
> > 'imread') with some warnings:
> > ** Message: pygobject_register_sinkfunc is deprecated (GstObject)
> > Warning 1: TIFFReadDirectory:Unknown field with tag 34959 (0x888f)
> > encountered
> > Warning 1: TIFFReadDirectory:Unknown field with tag 34960 (0x8890)
> > encountered
> > Warning 1: TIFFReadDirectory:Unknown field with tag 34959 (0x888f)
> > encountered
> > Warning 1: TIFFReadDirectory:Unknown field with tag 34960 (0x8890)
> > encountered
>
> > best regards
> > Jean-Patrick