Greyscale reconstruction and merging CellProfiler code

Tony Yu tsyu80 at gmail.com
Thu Jul 7 19:39:07 EDT 2011


Hi,

I recently had the need for a function to do greyscale reconstruction and
found out that the CellProfiler code has this available. I've added that
chunk of code from the CellProfiler code to a branch in my repo:

https://github.com/tonysyu/scikits.image/tree/reconstruction

The addition was added over a series of
commits<https://github.com/tonysyu/scikits.image/commits/reconstruction>
with
only minor changes to the original CellProfiler code (except for one large,
unused chunk of code that I deleted). That brings me to my question: what
are the suggested changes when merging CellProfiler code? Is it as simple as
putting the chunks of code in the right place (i.e. putting the code in the
correct module(s) and adding the tests)? There's a number of things that
could be added/changed, but I'm uncertain about how much *needs* to be done
in order to be "acceptable" for addition into the scikit.

Best,
-Tony
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