Re : Re: Re : Re: Re : Re: multispectral imaging: rgb image

[jip]

Hi Stéfan,

Thank you so much!
I have things to learn with your script. You use a dictionary for the bands, 
isn't it? That may help me to write a class where the number of 
fluorochromes can vary.

When Running the script, I get:

*Traceback (most recent call last):
  File "/home/claire/Applications/ProjetPython/mfish/mfish.py", line 20, in 
<module>
    bands.append(sio.imread(band))
  File 
"/usr/local/lib/python2.6/dist-packages/scikits.image-0.3dev-py2.6-linux-i686.egg/scikits/image/io/io.py", 
line 72, in imread
    return func(*args, **kwargs)
  File 
"/usr/local/lib/python2.6/dist-packages/scikits.image-0.3dev-py2.6-linux-i686.egg/scikits/image/io/_plugins/pil_plugin.py", 
line 16, in imread
    im = Image.open(fname)
  File "/usr/lib/python2.6/dist-packages/PIL/Image.py", line 1952, in open
    fp = __builtin__.open(fp, "rb")
IOError: [Errno 2] No such file or directory: 'Aqua.tif'
    img = call_plugin('imread', fname, plugin=plugin, **plugin_args)
  File 
"/usr/local/lib/python2.6/dist-packages/scikits.image-0.3dev-py2.6-linux-i686.egg/scikits/image/io/_plugins/plugin.py", 
line 88, in call*


I check if I didn't modify some path or file, but I don't think so:

*~/Applications/ImagesTest/MFISH$ ls 
Aqua.tif  Case Info  FarRed.tif  G.png      Kar.tif     Red.tif
B.png     Dapi.tif   Gold.tif    Green.tif  README.TXT  R.png

claire at claire-laptop:~/Applications/ImagesTest/MFISH$ pwd
/home/claire/Applications/ImagesTest/MFISH*

Best Regards
Jean-Patrick
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.python.org/pipermail/scikit-image/attachments/20110524/65bd019f/attachment.html>