multi-page TIFF writer

Zachary Pincus zachary.pincus at yale.edu
Thu Apr 18 11:12:31 EDT 2013


OK, unittest added: https://github.com/scikit-image/scikit-image/pull/508

Also, BTW, I get the below test failure when I have matplotlib but no PIL installed. I think test_imread_url or the test right before it must be making some incorrect assumptions. (If I re-run the tests after this failure, then also all of the tifffile tests fail, so it seems that some test isn't doing proper teardown of the image loading plugins?)

Zach


ERROR: test_io.test_imread_url
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/nose-1.1.2-py2.7.egg/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scikit_image-0.9dev-py2.7-macosx-10.6-intel.egg/skimage/io/tests/test_io.py", line 27, in test_imread_url
    image = io.imread(image_url)
  File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scikit_image-0.9dev-py2.7-macosx-10.6-intel.egg/skimage/io/_io.py", line 136, in imread
    img = call_plugin('imread', f.name, plugin=plugin, **plugin_args)
  File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/scikit_image-0.9dev-py2.7-macosx-10.6-intel.egg/skimage/io/_plugins/plugin.py", line 100, in call
    return func(*args, **kwargs)
  File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/matplotlib/pyplot.py", line 1750, in imread
    return _imread(*args, **kwargs)
  File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/matplotlib/image.py", line 1193, in imread
    raise ValueError('Only know how to handle extensions: %s; with PIL installed matplotlib can handle more images' % handlers.keys())
ValueError: Only know how to handle extensions: ['png']; with PIL installed matplotlib can handle more images




On Apr 18, 2013, at 8:47 AM, Juan Nunez-Iglesias wrote:

> I think Zach knows better than I what the source of the error was, so he should probably handle it. ;)
> 
> 
> On Thu, Apr 18, 2013 at 12:52 PM, Stéfan van der Walt <stefan at sun.ac.za> wrote:
> Hi Juan
> 
> 
> On Apr 18, 2013 2:35 AM, "Juan Nunez-Iglesias" <jni.soma at gmail.com> wrote:
> > Yep, I've confirmed that your PR solved the problem for me! So I'll spare you that backtrace, Stefan. ;)
> 
> Great! Now, for some extra brownie points and our eternal gratitude: a unit test?
> 
> Stéfan 
> 
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