[scikit-image] Tools for 3D segmentation ?

[Vighnesh Birodkar]

Hey guys

Sorry for not being clear about this. What I meant is manual labelling of
3D volumes. I cannot reveal all the details, but it's basically a
foreground ​Vs background labelling task.

On 5 Apr 2017 9:52 pm, "Juan Nunez-Iglesias" <jni.soma at gmail.com> wrote:

> Well, almost three years ago we had a GSoC student work on it… =P
>
> Assuming you mean manual 3D segmentation, I second Greg’s recommendation
> of ITK-SNAP for fully manual segmentation. For semi-automated work, I
> recommend Ilastik (ilastik.org).
>
> Juan.
>
> On 5 Apr 2017, 7:43 PM -0400, Gregory Lee <grlee77 at gmail.com>, wrote:
>
>
> I was wondering if anyone on the list knew about software to do 3d
>> segmentation.
>>
>> Thanks
>> Vighnesh
>>
>>
> A nice, free GUI-based tool for interactive 3D segmentation is itk-snap
> http://www.itksnap.org/
>
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