[scikit-image] Tools for 3D segmentation ?

[Stefan van der Walt]

If anyone is willing to write an overview of how to do this with
screenshots, that'd make a great addition to the website.


Stéfan





On Wed, Apr 5, 2017, at 18:57, Vighnesh Birodkar wrote:

> Hey guys

> 

> Sorry for not being clear about this. What I meant is manual labelling
> of 3D volumes. I cannot reveal all the details, but it's basically a
> foreground Vs background labelling task.
> 

> On 5 Apr 2017 9:52 pm, "Juan Nunez-Iglesias"
> <jni.soma at gmail.com> wrote:
>> Well, almost three years ago we had a GSoC student work on it… =P

>> 

>> Assuming you mean manual 3D segmentation, I second Greg’s
>> recommendation of ITK-SNAP for fully manual segmentation. For semi-
>> automated work, I recommend Ilastik (ilastik.org).
>> 

>> Juan.

>> 

>> On 5 Apr 2017, 7:43 PM -0400, Gregory Lee <grlee77 at gmail.com>, wrote:
>> 

>>> 

>>>> I was wondering if anyone on the list knew about software to do 3d
>>>> segmentation.
>>>> 

>>>> Thanks

>>>> Vighnesh

>>>> 

>>> 

>>> A nice, free GUI-based tool for interactive 3D segmentation is
>>> itk-snap
>>> http://www.itksnap.org/

>>> 

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