[scikit-image] Error during env setup

[Mark Harfouche]

I meant the full output of your build pip install -e . --no-deps

On Tue, Aug 28, 2018 at 11:14 AM Mark Harfouche <mark.harfouche at gmail.com>
wrote:

> Hi Sena,
>
> Please run
>
> pip install requirements-parser
> python tools/build_versions.py
>
> Please provide the output of build_versions.py
>
> Can you somehow post the full output of the command?
> Maybe to pastebin?
>
> Mark
>
> On Tue, Aug 28, 2018 at 10:54 AM Sena Agezo <senaagezo at gmail.com> wrote:
>
>> Hi Juan,
>>
>> Yes, I did install Cython first before attempting to “pip install -e .”
>>
>> -Sena
>>
>> On Aug 27, 2018, at 8:45 PM, Juan Nunez-Iglesias <jni at fastmail.com>
>> wrote:
>>
>> Hi Sena, thanks for wanting to contribute!
>>
>> I believe you need install Cython first, and then it should work. Can you
>> give that a try and report back?
>>
>> Juan.
>>
>> On Tue, Aug 28, 2018, at 7:31 AM, Sena Agezo wrote:
>>
>> Hi,
>>
>> I am trying to make a contribution to the scikit-image documentation. In
>> my attempt to setup the environment after creating it, I keep getting an
>> error(see below). This error happens when I do "pip install -e ." in the
>> cloned scikit-image. I’m doing this on a linux machine.
>>
>> *error: Command "gcc -pthread -B
>> /home/liulab/anaconda3/envs/skimage/compiler_compat -Wl,--sysroot=/
>> -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
>> -I/tmp/pip-build-env-29p1x6uy/lib/python3.6/site-packages/numpy/core/include
>> -I/tmp/pip-build-env-29p1x6uy/lib/python3.6/site-packages/numpy/core/include
>> -I/home/liulab/anaconda3/envs/skimage/include/python3.6m
>> -I/home/liulab/anaconda3/envs/skimage/include/python3.6m -c _extrema_cy.c
>> -o build/temp.linux-x86_64-3.6/_extrema_cy.o -MMD -MF
>> build/temp.linux-x86_64-3.6/_extrema_cy.o.d" failed with exit status 1*
>> *    gcc: error: _extrema_cy.c: No such file or directory*
>> *    gcc: error: _extrema_cy.c: No such file or directory*
>>
>> *    ----------------------------------------*
>> *Command "/home/liulab/anaconda3/envs/skimage/bin/python -c "import
>> setuptools,
>> tokenize;__file__='/home/liulab/Documents/scikit-image/setup.py';f=getattr(tokenize,
>> 'open', open)(__file__);code=f.read().replace('\r\n',
>> '\n');f.close();exec(compile(code, __file__, 'exec'))" develop --no-deps"
>> failed with error code 1 in /home/liulab/Documents/scikit-image/*
>>
>> Please advise on what I should do to solve the issue and let me know if
>> you have any questions.
>>
>> Thanks,
>> Sena
>>
>>
>>
>>
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