[scikit-learn] ANN: DIPY 1.1.1 - a powerful release

[Andrew Howe]

I was unaware of this package, and had to look it up. It's my opinion that
his package is only relevant to a likely small subset of users engaged in
computational neuroanatomy. I am not sure updates really belong on this
list...

Andrew

<~~~~~~~~~~~~~~~~~~~~~~~~~~~>
J. Andrew Howe, PhD
LinkedIn Profile <http://www.linkedin.com/in/ahowe42>
ResearchGate Profile <http://www.researchgate.net/profile/John_Howe12/>
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I live to learn, so I can learn to live. - me
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On Sat, Jan 18, 2020 at 1:12 PM Joel Nothman <joel.nothman at gmail.com> wrote:

> If the Scikit-learn mailing list is going to include announcements of
> related package releases, could we please get a line or two describing that
> package? I expect most readers here don't know of DIPY, or of its relevance
> to Scikit-learn users. (I'm still not sure why it's generally relevant to
> scikit-learn users.)
>
> Thanks
>
> On Fri, 17 Jan 2020 at 04:04, Eleftherios Garyfallidis <
> garyfallidis at gmail.com> wrote:
>
>> We are excited to announce a new release of DIPY:
>>
>>
>> DIPY 1.1.1 is out! In addition:
>>
>>
>> a) A new 5 day workshop available during March 16-20 to learn the theory
>> and applications of the hundreds of methods available in DIPY 1.1.1
>> Intense!
>>
>> See the exquisite program here <https://workshop.dipy.org>.
>>
>> *b) Given the need for a myriad of new DIPY derivative projects, DIPY
>> moved to its own organization in GitHub. **Long live DIPY! *
>> *And therefore, *https://github.com/dipy/dipy* supersedes https://github.com/nipy/dipy
>> <https://github.com/nipy/dipy> The old link will be available as a redirect
>> link for the next 6 months.*
>>
>> c) Please support us by *citing** DIPY* in your papers using the
>> following DOI: 10.3389/fninf.2014.00008
>> <https://www.ncbi.nlm.nih.gov/pubmed/24600385>otherwise the DIPY
>> citation police will find you. ;)
>>
>> DIPY 1.1.1 (Friday, 10 January 2020)
>>
>> This release received contributions from 11 developers (the full release
>> notes are at:
>> https://dipy.org/documentation/1.1.1./release_notes/release1.1/). Thank
>> you all for your contributions and feedback!
>>
>> Please click here <https://dipy.org/documentation/1.1.1./api_changes/>
>> to check API changes.
>>
>> Highlights of this release include:
>>
>>    -
>>
>>    New module for deep learning DIPY.NN (uses TensorFlow 2.0).
>>    -
>>
>>    Improved DKI performance and increased utilities.
>>    -
>>
>>    Non-linear and RESTORE fits from DTI compatible now with DKI.
>>    -
>>
>>    Numerical solutions for estimating axial, radial and mean kurtosis.
>>    -
>>
>>    Added Kurtosis Fractional Anisotropy by Glenn et al. 2015.
>>    -
>>
>>    Added Mean Kurtosis Tensor by Hansen et al. 2013.
>>    -
>>
>>    Nibabel minimum version is 3.0.0.
>>    -
>>
>>    Azure CI added and Appveyor CI removed.
>>    -
>>
>>    New command line interfaces for LPCA, MPPCA and Gibbs Unringing.
>>    -
>>
>>    New MTMS CSD tutorial added.
>>    -
>>
>>    Horizon refactored and updated to support StatefulTractograms.
>>    -
>>
>>    Speeded up all cython modules by using a smarter configuration
>>    setting.
>>    -
>>
>>    All tutorials updated to API changes and 2 new tutorials added.
>>    -
>>
>>    Large documentation update.
>>    -
>>
>>    Closed 126 issues and merged 50 pull requests.
>>
>> Note:
>>
>>    -
>>
>>    Have in mind that DIPY stopped supporting Python 2 after version
>>    0.16.0. All major Python projects have switched to Python 3. It is time
>>    that you switch too.
>>
>>
>>
>> To upgrade or install <http://dipy.org/release0.10.html> DIPY
>>
>> Run the following command in your terminal:
>> <http://dipy.org/release0.10.html>
>>
>> pip install --upgrade dipy
>>
>> or
>>
>> conda install -c conda-forge dipy
>>
>> This version of DIPY depends on nibabel (3.0.0+).
>>
>> For visualization you need FURY (0.4.0+).
>>
>> Questions or suggestions?
>>
>>
>>
>> For any questions go to http://dipy.org, or send an e-mail to
>> dipy at python.org <neuroimaging at python.org>
>>
>> We also have an instant messaging service and chat room available at
>> https://gitter.im/nipy/dipy
>>
>> On behalf of the DIPY developers,
>>
>> Eleftherios Garyfallidis, Ariel Rokem, Serge Koudoro
>>
>> https://dipy.org/contributors
>>
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>>
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