[scikit-learn] CLUSTER ANALYSIS AND THE SEARCH OF A SAMPLE MODE
Jaime Lopez
jalopcar at gmail.com
Mon Sep 18 12:07:56 EDT 2023
Hi,
Same error, maybe it could be related to the database I got from github
(iris.xlsx), could you share yours?.
[image: image.png]
JL
On Mon, Sep 18, 2023 at 1:57 AM Ulderico Santarelli <
ulderico.santarelli at gmail.com> wrote:
> *I think it better to send you the script in its integrity. I ran now and
> it works. *
> *about work it is*
> work
> array([[ 5.63011247],
> [-2.31453939],
> [22.23122848],
> [15.37678101]])
> np.shape(work)
> (4, 1)
>
> *my best regards. *
> *Ulderico.*
>
> _________________________________________________________________________________
> import numpy as np
> import pandas as pd
> dataraw = pd.read_excel("C:\Pyth\iris.xlsx")
> #standardize data --- dataraw is a DataFrame
> #locate data in the DataFrame
> datar = dataraw.iloc[:,1:5]
> means = datar.mean(axis = 0)
> stdev = datar.std(axis = 0)
> data = (datar-means)/stdev
> #keep just quantitative variables
> #CENTRALITY INDEX
> scalar = pd.merge(data, data, how = 'cross')
> point1 = scalar.loc[:, 'sepal length _x':'petal width _x']
> point2 = scalar.loc[:, 'sepal length _y':'petal width _y']
> apoint1 = point1.to_numpy(dtype = float)
> apoint2 = point2.to_numpy(dtype = float)
> delta = (apoint1 - apoint2)
> force = 0
> if delta.any() != 0:
> force = np.exp(-abs(delta))
> sig = np.sign(delta)
> sforce = sig*force
> dsforce = pd.DataFrame(sforce)
> #dsforce.to_excel('C:\Pyth\dsforce.xlsx')
> arr = np.ones((150, 1),)
> sforcet = sforce.T
> sum_force =np.zeros((1, 4),) #do not use empty arrays
> start = 0
> end = 150
> for i in range(150):
> s_forcet = sforcet[:, start:end]
> work = np.matmul(s_forcet, arr)
> sum_force =np.concatenate((sum_force, work.reshape(1, 4)), axis = 0)
> start = end
> end +=150
> sumforce = sum_force[1:, :]
> dsumforce = pd.DataFrame(sumforce)
> dsumforce.to_excel('C:\Pyth\sumforce_sqc.xlsx')
> sum_force_square = sumforce**2
> ssT = np.ones((4, 1),)
> T_w_ = np.sqrt(np.matmul(sum_force_square, ssT))
> dT_w_ = pd.DataFrame(T_w_, )
> dT_w_.to_excel('C:\Pyth\T_w_.xlsx')
>
> Il giorno dom 17 set 2023 alle ore 18:14 Jaime Lopez <jalopcar at gmail.com>
> ha scritto:
>
>> Hi there,
>>
>> I got interested in your project, but I found this error from the
>> beginning (see attached image).
>> The work array cannot be reshaped to (1,4), cause it has shape (2,1), any
>> suggestions?
>>
>> JL
>>
>> [image: image.png]
>>
>> On Thu, Sep 14, 2023 at 11:29 AM Ulderico Santarelli <
>> ulderico.santarelli at gmail.com> wrote:
>>
>>> *I am an old guy who started programming around the seventies of
>>> the last century* with ASSEMBLER 360, then FORTRAN, PL1, APL, IBM
>>> APPLICATION SYSTEM and, last, the marvelous SAS. Having heard around about
>>> the powerful, flexible, functionally complete PYTHON UNIVERSE”,
>>> encompassing an advanced Object-Oriented Language and a very wide family of
>>> packages, I decided to run an exercise about a problem I've been
>>> tackling since my youth (have a look at the Bibliography). I succeeded in
>>> completing it in a few days and I'm attaching my solution to the problem of
>>> finding the points in a sample that are "central" in a surrounding
>>> topological neighborhood. They are eligible as centroids for a Cluster
>>> Analysis after the aggregation of "too near points'. The solution is based
>>> on the search of potential wells in a suitable potential field, similar to
>>> the one all of us studied in high school. Therefore, too near points may be
>>> in the same potential well.
>>> No more words, have a look at the attachment.
>>> My coding is that of a beginner. I'm sure everybody would find more
>>> efficient coding. As a comment: I started studying Python around May 15th
>>> 2023.
>>> My best regards.
>>> Ulderico Santarelli.
>>> _______________________________________________
>>> scikit-learn mailing list
>>> scikit-learn at python.org
>>> https://mail.python.org/mailman/listinfo/scikit-learn
>>>
>>
>>
>> --
>>
>> *Jaime Lopez Carvajal*
>> _______________________________________________
>> scikit-learn mailing list
>> scikit-learn at python.org
>> https://mail.python.org/mailman/listinfo/scikit-learn
>>
> _______________________________________________
> scikit-learn mailing list
> scikit-learn at python.org
> https://mail.python.org/mailman/listinfo/scikit-learn
>
--
*Jaime Lopez Carvajal*
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