[SciPy-user] Making faster statistical distributions
Christopher Fonnesbeck
chris at fonnesbeck.org
Thu Jan 29 10:36:38 EST 2004
I am already using pieces of SciPy in my Markov chain Monte Carlo
package (PyMC), mostly for plotting functionality. I would also like to
exploit the distributions implemented in scipy.stats, but they are far
too slow for use in statistical simulation applications like MCMC,
where millions of random draws may be taken. Therefore, I am thinking
of implementing many of these distributions (at least the common ones)
as C or Fortran extensions. I am unsure whether to use Fortran through
f2py for this task, or C through weave.inline (for example). I have
used both in the past for various tasks, and was generally happy with
both. Any suggestions?
Thanks,
C.
--
Christopher J. Fonnesbeck ( c h r i s @ f o n n e s b e c k . o r g )
Georgia Cooperative Fish & Wildlife Research Unit, University of Georgia
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