[SciPy-user] Question concerning installation

Darren Dale dd55 at cornell.edu
Thu Feb 10 23:22:39 EST 2005 

I am trying to understand a couple issues with installation of scipy, with the 
hope of getting the gentoo ebuild squared away.

I think I have a working installation on Gentoo (installed in the standard 
way), linking to the atlas-tuned full lapack and blas libraries. I *think* 
it's working. I have Numeric and numarray installed and linked to atlas, and 
I edited site.cfg to look in the right places. When I installed scipy, I got 
the following message:

****************************************************************
    Using fortran_libraries setup option is depreciated
    ---------------------------------------------------
    Use libraries option instead. Yes, scipy_distutils
    now supports Fortran sources in libraries.
****************************************************************

What does this mean? Also, when I run scipy.test() (any level), I get the 
following two errors:

****************************************************************
WARNING: clapack module is empty
-----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by scipy/system_info.py,
  then scipy uses flapack instead of clapack.
****************************************************************

and 

****************************************************************
WARNING: cblas module is empty
-----------
See scipy/INSTALL.txt for troubleshooting.
Notes:
* If atlas library is not found by scipy/system_info.py,
  then scipy uses fblas instead of cblas.
****************************************************************

What do these mean? The results of all scipy.test(level=x) were ok. Levels 4 
and 5 failed the first trial on check_normal 
(scipy.stats.morestats.test_morestats.test_anderson). They passed a second 
trial.

The output from system_info.py is listed below, it looks to me like everything 
is in order. 

Any help would be appreciated. I think I am close to understanding enough to 
get this ebuild working on gentoo (thats good advertising for scipy, in my 
opinion.)

Thanks!

Darren (sorry for the long post)


_pkg_config_info:
  NOT AVAILABLE

agg2_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

atlas_blas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/liblapack.so )
( paths: /usr/lib/libblas.so )
( paths: /usr/lib/libcblas.so )
( paths: /usr/lib/libatlas.so )
system_info.atlas_blas_info
( include_dirs = /usr/include/atlas:/usr/include )
( paths: /usr/include/atlas/atlas_cNCmm.h,/usr/include/atlas/atlas_smvN.h,/usr/include/atlas/atlas_smvS.h,/usr/include/atlas/atlas_smvT.h,/usr/include/atlas/atlas_dNCmm.h,/usr/include/atlas/atlas_type.h,/usr/include/atlas/atlas_zmvN.h,/usr/include/atlas/atlas_zmvS.h,/usr/include/atlas/atlas_zmvT.h,/usr/include/atlas/atlas_sNCmm.h,/usr/include/atlas/atlas_zNCmm.h,/usr/include/atlas/atlas_zsysinfo.h,/usr/include/atlas/atlas_ctrsmXover.h,/usr/include/atlas/atlas_ztrsmXover.h,/usr/include/atlas/atlas_csysinfo.h,/usr/include/atlas/atlas_dtrsmXover.h,/usr/include/atlas/atlas_ssysinfo.h,/usr/include/atlas/atlas_cr1.h,/usr/include/atlas/atlas_cmv.h,/usr/include/atlas/atlas_dr1.h,/usr/include/atlas/atlas_dmv.h,/usr/include/atlas/atlas_sr1.h,/usr/include/atlas/atlas_smv.h,/usr/include/atlas/atlas_zr1.h,/usr/include/atlas/atlas_zmv.h,/usr/include/atlas/atlas_strsmXover.h,/usr/include/atlas/atlas_dsysinfo.h,/usr/include/atlas/atlas_cacheedge.h,/usr/include/atlas/atlas_buildinfo.h,/usr/include/atlas/atlas_cmvN.h,/usr/include/atlas/atlas_cmvS.h,/usr/include/atlas/atlas_cmvT.h,/usr/include/atlas/atlas_dmvN.h,/usr/include/atlas/atlas_dmvS.h,/usr/include/atlas/atlas_dmvT.h )
( paths: /usr/include/atlas )
( paths: /usr/include/atlas/cblas.h,/usr/include/atlas/cblas.h )
  FOUND:
    libraries = ['lapack', 'blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = c
    include_dirs = ['/usr/include/atlas']

atlas_blas_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/liblapack.so )
( paths: /usr/lib/libblas.so )
( paths: /usr/lib/libcblas.so )
( paths: /usr/lib/libatlas.so )
system_info.atlas_blas_threads_info
( include_dirs = /usr/include/atlas:/usr/include )
( paths: /usr/include/atlas/atlas_cNCmm.h,/usr/include/atlas/atlas_smvN.h,/usr/include/atlas/atlas_smvS.h,/usr/include/atlas/atlas_smvT.h,/usr/include/atlas/atlas_dNCmm.h,/usr/include/atlas/atlas_type.h,/usr/include/atlas/atlas_zmvN.h,/usr/include/atlas/atlas_zmvS.h,/usr/include/atlas/atlas_zmvT.h,/usr/include/atlas/atlas_sNCmm.h,/usr/include/atlas/atlas_zNCmm.h,/usr/include/atlas/atlas_zsysinfo.h,/usr/include/atlas/atlas_ctrsmXover.h,/usr/include/atlas/atlas_ztrsmXover.h,/usr/include/atlas/atlas_csysinfo.h,/usr/include/atlas/atlas_dtrsmXover.h,/usr/include/atlas/atlas_ssysinfo.h,/usr/include/atlas/atlas_cr1.h,/usr/include/atlas/atlas_cmv.h,/usr/include/atlas/atlas_dr1.h,/usr/include/atlas/atlas_dmv.h,/usr/include/atlas/atlas_sr1.h,/usr/include/atlas/atlas_smv.h,/usr/include/atlas/atlas_zr1.h,/usr/include/atlas/atlas_zmv.h,/usr/include/atlas/atlas_strsmXover.h,/usr/include/atlas/atlas_dsysinfo.h,/usr/include/atlas/atlas_cacheedge.h,/usr/include/atlas/atlas_buildinfo.h,/usr/include/atlas/atlas_cmvN.h,/usr/include/atlas/atlas_cmvS.h,/usr/include/atlas/atlas_cmvT.h,/usr/include/atlas/atlas_dmvN.h,/usr/include/atlas/atlas_dmvS.h,/usr/include/atlas/atlas_dmvT.h )
( paths: /usr/include/atlas )
( paths: /usr/include/atlas/cblas.h,/usr/include/atlas/cblas.h )
  FOUND:
    libraries = ['lapack', 'blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = c
    include_dirs = ['/usr/include/atlas']

atlas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/liblapack.so )
( paths: /usr/lib/libblas.so )
( paths: /usr/lib/libcblas.so )
( paths: /usr/lib/libatlas.so )
( paths: /usr/lib/liblapack.so )
system_info.atlas_info
( include_dirs = /usr/include/atlas:/usr/include )
( paths: /usr/include/atlas/atlas_cNCmm.h,/usr/include/atlas/atlas_smvN.h,/usr/include/atlas/atlas_smvS.h,/usr/include/atlas/atlas_smvT.h,/usr/include/atlas/atlas_dNCmm.h,/usr/include/atlas/atlas_type.h,/usr/include/atlas/atlas_zmvN.h,/usr/include/atlas/atlas_zmvS.h,/usr/include/atlas/atlas_zmvT.h,/usr/include/atlas/atlas_sNCmm.h,/usr/include/atlas/atlas_zNCmm.h,/usr/include/atlas/atlas_zsysinfo.h,/usr/include/atlas/atlas_ctrsmXover.h,/usr/include/atlas/atlas_ztrsmXover.h,/usr/include/atlas/atlas_csysinfo.h,/usr/include/atlas/atlas_dtrsmXover.h,/usr/include/atlas/atlas_ssysinfo.h,/usr/include/atlas/atlas_cr1.h,/usr/include/atlas/atlas_cmv.h,/usr/include/atlas/atlas_dr1.h,/usr/include/atlas/atlas_dmv.h,/usr/include/atlas/atlas_sr1.h,/usr/include/atlas/atlas_smv.h,/usr/include/atlas/atlas_zr1.h,/usr/include/atlas/atlas_zmv.h,/usr/include/atlas/atlas_strsmXover.h,/usr/include/atlas/atlas_dsysinfo.h,/usr/include/atlas/atlas_cacheedge.h,/usr/include/atlas/atlas_buildinfo.h,/usr/include/atlas/atlas_cmvN.h,/usr/include/atlas/atlas_cmvS.h,/usr/include/atlas/atlas_cmvT.h,/usr/include/atlas/atlas_dmvN.h,/usr/include/atlas/atlas_dmvS.h,/usr/include/atlas/atlas_dmvT.h )
( paths: /usr/include/atlas )
( paths: /usr/include/atlas/cblas.h,/usr/include/atlas/cblas.h )
  FOUND:
    libraries = ['lapack', 'lapack', 'blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77
    include_dirs = ['/usr/include/atlas']

atlas_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/liblapack.so )
( paths: /usr/lib/libblas.so )
( paths: /usr/lib/libcblas.so )
( paths: /usr/lib/libatlas.so )
( paths: /usr/lib/liblapack.so )
system_info.atlas_threads_info
( include_dirs = /usr/include/atlas:/usr/include )
( paths: /usr/include/atlas/atlas_cNCmm.h,/usr/include/atlas/atlas_smvN.h,/usr/include/atlas/atlas_smvS.h,/usr/include/atlas/atlas_smvT.h,/usr/include/atlas/atlas_dNCmm.h,/usr/include/atlas/atlas_type.h,/usr/include/atlas/atlas_zmvN.h,/usr/include/atlas/atlas_zmvS.h,/usr/include/atlas/atlas_zmvT.h,/usr/include/atlas/atlas_sNCmm.h,/usr/include/atlas/atlas_zNCmm.h,/usr/include/atlas/atlas_zsysinfo.h,/usr/include/atlas/atlas_ctrsmXover.h,/usr/include/atlas/atlas_ztrsmXover.h,/usr/include/atlas/atlas_csysinfo.h,/usr/include/atlas/atlas_dtrsmXover.h,/usr/include/atlas/atlas_ssysinfo.h,/usr/include/atlas/atlas_cr1.h,/usr/include/atlas/atlas_cmv.h,/usr/include/atlas/atlas_dr1.h,/usr/include/atlas/atlas_dmv.h,/usr/include/atlas/atlas_sr1.h,/usr/include/atlas/atlas_smv.h,/usr/include/atlas/atlas_zr1.h,/usr/include/atlas/atlas_zmv.h,/usr/include/atlas/atlas_strsmXover.h,/usr/include/atlas/atlas_dsysinfo.h,/usr/include/atlas/atlas_cacheedge.h,/usr/include/atlas/atlas_buildinfo.h,/usr/include/atlas/atlas_cmvN.h,/usr/include/atlas/atlas_cmvS.h,/usr/include/atlas/atlas_cmvT.h,/usr/include/atlas/atlas_dmvN.h,/usr/include/atlas/atlas_dmvS.h,/usr/include/atlas/atlas_dmvT.h )
( paths: /usr/include/atlas )
( paths: /usr/include/atlas/cblas.h,/usr/include/atlas/cblas.h )
  FOUND:
    libraries = ['lapack', 'lapack', 'blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77
    include_dirs = ['/usr/include/atlas']

blas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/libblas.so )
  FOUND:
    libraries = ['blas']
    library_dirs = ['/usr/lib']
    language = f77

blas_opt_info:
running build_src
building extension "atlas_version" sources
  adding 'build/src/atlas_version_0x53b6c39a.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
  FOUND:
    libraries = ['lapack', 'blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = c
    define_macros = [('ATLAS_INFO', '"\\"3.6.0\\""')]
    include_dirs = ['/usr/include/atlas']

blas_src_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

boost_python_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

dfftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/include/atlas:/usr/include )
  NOT AVAILABLE

dfftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/include/atlas:/usr/include )
  NOT AVAILABLE

djbfft_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/include/atlas:/usr/include )
  NOT AVAILABLE

fftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/include/atlas:/usr/include )
  NOT AVAILABLE

fftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/include/atlas:/usr/include )
  NOT AVAILABLE

freetype2_info:
  FOUND:
    libraries = ['freetype', 'z']
    define_macros = [('FREETYPE2_INFO', '"\\"9.4.3\\""'), 
('FREETYPE2_VERSION_9_4_3', None)]
    include_dirs = ['/usr/include/freetype2']

gdk_2_info:
  FOUND:
    libraries = ['gdk-x11-2.0', 'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 
'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_2_INFO', '"\\"2.4.14\\""'), ('GDK_VERSION_2_4_14', 
None), ('XTHREADS', None), ('_REENTRANT', None), ('XUSE_MTSAFE_API', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/X11R6/include', '/usr/include/pango-1.0', '/usr/include/freetype2', 
'/usr/include/freetype2/config', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gdk_info:
  FOUND:
    libraries = ['gdk', 'Xi', 'Xext', 'X11', 'm', 'glib']
    library_dirs = ['/usr/X11R6/lib']
    define_macros = [('GDK_INFO', '"\\"1.2.10\\""'), ('GDK_VERSION_1_2_10', 
None)]
    include_dirs = ['/usr/include/gtk-1.2', '/usr/X11R6/include', 
'/usr/include/glib-1.2', '/usr/lib/glib/include']

gdk_pixbuf_2_info:
  FOUND:
    libraries = ['gdk_pixbuf-2.0', 'm', 'gobject-2.0', 'gmodule-2.0', 'dl', 
'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_PIXBUF_2_INFO', '"\\"2.4.14\\""'), 
('GDK_PIXBUF_VERSION_2_4_14', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gdk_pixbuf_xlib_2_info:
  FOUND:
    libraries = ['gdk_pixbuf_xlib-2.0', 'gdk_pixbuf-2.0', 'm', 'gobject-2.0', 
'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_PIXBUF_XLIB_2_INFO', '"\\"2.4.14\\""'), 
('GDK_PIXBUF_XLIB_VERSION_2_4_14', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gdk_x11_2_info:
  FOUND:
    libraries = ['gdk-x11-2.0', 'gdk_pixbuf-2.0', 'm', 'pangoxft-1.0', 
'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GDK_X11_2_INFO', '"\\"2.4.14\\""'), 
('GDK_X11_VERSION_2_4_14', None), ('XTHREADS', None), ('_REENTRANT', None), 
('XUSE_MTSAFE_API', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/X11R6/include', '/usr/include/pango-1.0', '/usr/include/freetype2', 
'/usr/include/freetype2/config', '/usr/include/glib-2.0', 
'/usr/lib/glib-2.0/include']

gtkp_2_info:
  FOUND:
    libraries = ['gtk-x11-2.0', 'gdk-x11-2.0', 'atk-1.0', 'gdk_pixbuf-2.0', 
'm', 'pangoxft-1.0', 'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 
'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GTKP_2_INFO', '"\\"2.4.14\\""'), 
('GTK_VERSION_2_4_14',None), ('XTHREADS', None), ('_REENTRANT', None), 
('XUSE_MTSAFE_API', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/X11R6/include', '/usr/include/atk-1.0', '/usr/include/pango-1.0', 
'/usr/include/freetype2', '/usr/include/freetype2/config', 
'/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']

gtkp_x11_2_info:
  FOUND:
    libraries = ['gtk-x11-2.0', 'gdk-x11-2.0', 'atk-1.0', 'gdk_pixbuf-2.0', 
'm', 'pangoxft-1.0', 'pangox-1.0', 'pango-1.0', 'gobject-2.0', 'gmodule-2.0', 
'dl', 'glib-2.0']
    extra_link_args = ['-Wl,--export-dynamic']
    define_macros = [('GTKP_X11_2_INFO', '"\\"2.4.14\\""'), 
('GTK_X11_VERSION_2_4_14', None), ('XTHREADS', None), ('_REENTRANT', None), 
('XUSE_MTSAFE_API', None)]
    include_dirs = ['/usr/include/gtk-2.0', '/usr/lib/gtk-2.0/include', 
'/usr/X11R6/include', '/usr/include/atk-1.0', '/usr/include/pango-1.0', 
'/usr/include/freetype2', '/usr/include/freetype2/config', 
'/usr/include/glib-2.0', '/usr/lib/glib-2.0/include']

lapack_atlas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/liblapack.so )
( paths: /usr/lib/libblas.so )
( paths: /usr/lib/libcblas.so )
( paths: /usr/lib/libatlas.so )
( paths: /usr/lib/liblapack.so )
system_info.lapack_atlas_info
( include_dirs = /usr/include/atlas:/usr/include )
( paths: /usr/include/atlas/atlas_cNCmm.h,/usr/include/atlas/atlas_smvN.h,/usr/include/atlas/atlas_smvS.h,/usr/include/atlas/atlas_smvT.h,/usr/include/atlas/atlas_dNCmm.h,/usr/include/atlas/atlas_type.h,/usr/include/atlas/atlas_zmvN.h,/usr/include/atlas/atlas_zmvS.h,/usr/include/atlas/atlas_zmvT.h,/usr/include/atlas/atlas_sNCmm.h,/usr/include/atlas/atlas_zNCmm.h,/usr/include/atlas/atlas_zsysinfo.h,/usr/include/atlas/atlas_ctrsmXover.h,/usr/include/atlas/atlas_ztrsmXover.h,/usr/include/atlas/atlas_csysinfo.h,/usr/include/atlas/atlas_dtrsmXover.h,/usr/include/atlas/atlas_ssysinfo.h,/usr/include/atlas/atlas_cr1.h,/usr/include/atlas/atlas_cmv.h,/usr/include/atlas/atlas_dr1.h,/usr/include/atlas/atlas_dmv.h,/usr/include/atlas/atlas_sr1.h,/usr/include/atlas/atlas_smv.h,/usr/include/atlas/atlas_zr1.h,/usr/include/atlas/atlas_zmv.h,/usr/include/atlas/atlas_strsmXover.h,/usr/include/atlas/atlas_dsysinfo.h,/usr/include/atlas/atlas_cacheedge.h,/usr/include/atlas/atlas_buildinfo.h,/usr/include/atlas/atlas_cmvN.h,/usr/include/atlas/atlas_cmvS.h,/usr/include/atlas/atlas_cmvT.h,/usr/include/atlas/atlas_dmvN.h,/usr/include/atlas/atlas_dmvS.h,/usr/include/atlas/atlas_dmvT.h )
( paths: /usr/include/atlas )
( paths: /usr/include/atlas/cblas.h,/usr/include/atlas/cblas.h )
  FOUND:
    libraries = ['lapack', 'lapack', 'blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77
    include_dirs = ['/usr/include/atlas']

lapack_atlas_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/liblapack.so )
( paths: /usr/lib/libblas.so )
( paths: /usr/lib/libcblas.so )
( paths: /usr/lib/libatlas.so )
( paths: /usr/lib/liblapack.so )
system_info.lapack_atlas_threads_info
( include_dirs = /usr/include/atlas:/usr/include )
( paths: /usr/include/atlas/atlas_cNCmm.h,/usr/include/atlas/atlas_smvN.h,/usr/include/atlas/atlas_smvS.h,/usr/include/atlas/atlas_smvT.h,/usr/include/atlas/atlas_dNCmm.h,/usr/include/atlas/atlas_type.h,/usr/include/atlas/atlas_zmvN.h,/usr/include/atlas/atlas_zmvS.h,/usr/include/atlas/atlas_zmvT.h,/usr/include/atlas/atlas_sNCmm.h,/usr/include/atlas/atlas_zNCmm.h,/usr/include/atlas/atlas_zsysinfo.h,/usr/include/atlas/atlas_ctrsmXover.h,/usr/include/atlas/atlas_ztrsmXover.h,/usr/include/atlas/atlas_csysinfo.h,/usr/include/atlas/atlas_dtrsmXover.h,/usr/include/atlas/atlas_ssysinfo.h,/usr/include/atlas/atlas_cr1.h,/usr/include/atlas/atlas_cmv.h,/usr/include/atlas/atlas_dr1.h,/usr/include/atlas/atlas_dmv.h,/usr/include/atlas/atlas_sr1.h,/usr/include/atlas/atlas_smv.h,/usr/include/atlas/atlas_zr1.h,/usr/include/atlas/atlas_zmv.h,/usr/include/atlas/atlas_strsmXover.h,/usr/include/atlas/atlas_dsysinfo.h,/usr/include/atlas/atlas_cacheedge.h,/usr/include/atlas/atlas_buildinfo.h,/usr/include/atlas/atlas_cmvN.h,/usr/include/atlas/atlas_cmvS.h,/usr/include/atlas/atlas_cmvT.h,/usr/include/atlas/atlas_dmvN.h,/usr/include/atlas/atlas_dmvS.h,/usr/include/atlas/atlas_dmvT.h )
( paths: /usr/include/atlas )
( paths: /usr/include/atlas/cblas.h,/usr/include/atlas/cblas.h )
  FOUND:
    libraries = ['lapack', 'lapack', 'blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77
    include_dirs = ['/usr/include/atlas']

lapack_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/liblapack.so )
  FOUND:
    libraries = ['lapack']
    library_dirs = ['/usr/lib']
    language = f77

lapack_opt_info:
/scratch/python/SciPy_complete-0.3.2/scipy_core/scipy_distutils/system_info.py:812: 
FutureWarning: hex()/oct() of negative int will return a signed string 
inPython 2.4 and up
  magic = hex(hash(`config`))
running build_src
building extension "atlas_version" sources
  adding 'build/src/atlas_version_0xe146d5ff.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
Could not locate executable f77
customize GnuFCompiler
customize GnuFCompiler
customize GnuFCompiler using build_ext
  FOUND:
    libraries = ['lapack', 'lapack', 'blas', 'cblas', 'atlas']
    library_dirs = ['/usr/lib']
    language = f77
    define_macros = [('ATLAS_INFO', '"\\"3.6.0\\""')]
    include_dirs = ['/usr/include/atlas']

lapack_src_info:
( src_dirs = .:/usr/local/src )
  NOT AVAILABLE

numarray_info:
( include_dirs = /usr/include/atlas:/usr/include )
  FOUND:
    define_macros = [('NUMARRAY_VERSION', '"\\"1.1.1\\""')]

numpy_info:
( include_dirs = /usr/include/atlas:/usr/include )
  FOUND:
    define_macros = [('NUMERIC_VERSION', '"\\"23.7\\""')]

sfftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/include/atlas:/usr/include )
  NOT AVAILABLE

sfftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/include/atlas:/usr/include )
  NOT AVAILABLE

wx_info:
  FOUND:
    libraries = ['wx_gtk2-2.4']
    extra_link_args = ['-pthread']
    define_macros = [('WX_INFO', '"\\"2.4.2\\""'), ('WX_VERSION_2_4_2', None),
('WX_RELEASE_2_4', None), ('GTK_NO_CHECK_CASTS', None), ('__WXGTK__', None), 
('_FILE_OFFSET_BITS', '64'), ('_LARGE_FILES', None)]
    include_dirs = ['/usr/lib/wx/include/gtk2-2.4']

x11_info:
( library_dirs = /usr/X11R6/lib:/usr/lib )
( include_dirs = /usr/include/atlas:/usr/include )
( paths: /usr/X11R6/lib/libX11.so )
( paths: /usr/include/X11/X.h )
  FOUND:
    libraries = ['X11']
    library_dirs = ['/usr/X11R6/lib']
    include_dirs = ['/usr/include']

xft_info:
  FOUND:
    libraries = ['Xft', 'X11', 'freetype', 'Xrender', 'fontconfig']
    define_macros = [('XFT_INFO', '"\\"2.1.2.2\\""'), ('XFT_VERSION_2_1_2_2', 
None)]
    include_dirs = ['/usr/X11R6/include', '/usr/include/freetype2', 
'/usr/include/freetype2/config']

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