[SciPy-User] how to use stats.kruskal correctly? RESOLVED!

[Chung Tae-Hoon]

Hi, All;

The posted problem is resolved.
Thank you very much, Josef!

Tae-Hoon Chung

-----Original Message-----
From: scipy-user-bounces at scipy.org [mailto:scipy-user-bounces at scipy.org] On
Behalf Of josef.pktd at gmail.com
Sent: Friday, 14 August, 2009 10:26 PM
To: SciPy Users List
Subject: Re: [SciPy-User] how to use stats.kruskal correctly?

On Fri, Aug 14, 2009 at 8:03 AM, <josef.pktd at gmail.com> wrote:
> On Fri, Aug 14, 2009 at 7:35 AM, Chung, Tae-Hoon<hoontaechung at gmail.com>
wrote:
>> Hi, All;
>>
>> What's the correct way to put something into the stats.kruskal function?
>> Any examples?
>> I tried one list with multiple lists as input or several lists
>> separately but none succeeded.
>> The reference contains only the following description, with no
>> explanation on input arguments:
>>
>> scipy.stats.kruskal(*args)
>>
>> The Kruskal-Wallis H-test is a non-parametric ANOVA for 2 or more
>> groups, requiring at least 5 subjects in each group. This function
>> calculates the Kruskal-Wallis H and associated p-value for 2 or more
>> independent samples.
>>
>> Returns: H-statistic (corrected for ties), associated p-value
>>
>> Thanks in advance,
>> Tae-Hoon Chung
>> _______________________________________________
>> SciPy-User mailing list
>> SciPy-User at scipy.org
>> http://mail.scipy.org/mailman/listinfo/scipy-user
>>
>
> I guess there is a check for input type, or conversion to array missing
>
>>>> stats.kruskal([1,2,3,4],[4,6,7,9])
> Traceback (most recent call last):
>  File "<pyshell#0>", line 1, in <module>
>    stats.kruskal([1,2,3,4],[4,6,7,9])
>  File "C:\Josef\scipytrunkcopy\scipy\stats\stats.py", line 2437, in
kruskal
>    all.extend(args[i].tolist())
> AttributeError: 'list' object has no attribute 'tolist'
>
>>>> stats.kruskal(np.array([1,2,3,4]),np.array([4,6,7,9]))
> (4.7439759036144578, 0.029401048190339632)
>
> I will check this
>
> Josef
>

stats.kruskal needs a bit of a rewrite to use more of a numpy style
than the inherited python list style.

Until this is done the function assumes that the arguments are numpy
arrays, one for each data series or groups.
Currently all tests use numpy arrays.

For more examples on the usage of kruskal and related stats functions,
you can look at http://projects.scipy.org/scipy/ticket/901

Josef
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