[SciPy-User] Problem with scipy.special.chebyt
Ivo Maljevic
ivo.maljevic at gmail.com
Sat Aug 29 14:54:15 EDT 2009
Is this helpful:
python setup.py build_ext -g install
non-existing path in 'cluster':
'src/vq_module.c'
non-existing path in 'cluster':
'src/vq.c'
non-existing path in 'cluster':
'src/hierarchy_wrap.c'
non-existing path in 'cluster':
'src/hierarchy.c'
Appending scipy.cluster configuration to
scipy
Ignoring attempt to set 'name' (from 'scipy' to
'scipy.cluster')
Warning: No configuration returned, assuming
unavailable.
Appending scipy.constants configuration to
scipy
Ignoring attempt to set 'name' (from 'scipy' to
'scipy.constants')
could not resolve pattern in 'fftpack':
'src/dfftpack/*.f'
non-existing path in 'fftpack':
'fftpack.pyf'
non-existing path in 'fftpack':
'src/zfft.c'
non-existing path in 'fftpack':
'src/drfft.c'
non-existing path in 'fftpack':
'src/zrfft.c'
non-existing path in 'fftpack':
'src/zfftnd.c'
non-existing path in 'fftpack':
'src/zfft_fftpack.c'
non-existing path in 'fftpack':
'src/drfft_fftpack.c'
non-existing path in 'fftpack':
'src/zfftnd_fftpack.c'
non-existing path in 'fftpack':
'convolve.pyf'
non-existing path in 'fftpack':
'src/convolve.c'
Appending scipy.fftpack configuration to
scipy
Ignoring attempt to set 'name' (from 'scipy' to
'scipy.fftpack')
/usr/lib64/python2.6/site-packages/numpy/distutils/command/config.py:361:
DeprecationWarning:
+++++++++++++++++++++++++++++++++++++++++++++++++
Usage of get_output is deprecated: please do
not
use it anymore, and avoid configuration
checks
involving running executable on the target
machine.
+++++++++++++++++++++++++++++++++++++++++++++++++
DeprecationWarning)
Could not locate executable g77
Could not locate executable f77
Could not locate executable ifort
Could not locate executable ifc
Could not locate executable lf95
Could not locate executable pgf90
Could not locate executable pgf77
Could not locate executable f90
Could not locate executable f95
Could not locate executable fort
Could not locate executable efort
Could not locate executable efc
Found executable /usr/bin/gfortran
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
ATLAS version 3.8.3 built by abuild on Fri Mar 13 05:13:09 UTC 2009:
UNAME : Linux build20 2.6.27 #1 SMP 2009-02-28 04:40:21 +0100 x86_64
x86_64 x86_64 GNU/Linux
INSTFLG : -1 0 -a
1
ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_AMD64K10h -DATL_CPUMHZ=2310
-DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_3DNow -DATL_USE64BITS
-DATL_GAS_x8664
F2CDEFS : -DAdd_ -DF77_INTEGER=int
-DStringSunStyle
CACHEEDGE:
1048576
F77 : gfortran, version GNU Fortran (SUSE Linux) 4.3.2
[gcc-4_3-branch revision 141291]
F77FLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -falign-loops=32
-fPIC -m64
SMC : gcc, version gcc (SUSE Linux) 4.3.2 [gcc-4_3-branch revision
141291]
SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -falign-loops=32
-fPIC -m64
SKC : gcc, version gcc (SUSE Linux) 4.3.2 [gcc-4_3-branch revision
141291]
SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -falign-loops=32
-fPIC -m64
could not resolve pattern in 'integrate':
'linpack_lite/*.f'
could not resolve pattern in 'integrate':
'mach/*.f'
could not resolve pattern in 'integrate':
'quadpack/*.f'
could not resolve pattern in 'integrate':
'odepack/*.f'
non-existing path in 'integrate':
'_quadpackmodule.c'
non-existing path in 'integrate':
'quadpack.h'
non-existing path in 'integrate':
'__quadpack.h'
non-existing path in 'integrate':
'_odepackmodule.c'
non-existing path in 'integrate':
'__odepack.h'
non-existing path in 'integrate':
'multipack.h'
non-existing path in 'integrate':
'vode.pyf'
Appending scipy.integrate configuration to
scipy
Ignoring attempt to set 'name' (from 'scipy' to
'scipy.integrate')
could not resolve pattern in 'interpolate':
'fitpack/*.f'
non-existing path in 'interpolate':
'src/_fitpackmodule.c'
non-existing path in 'interpolate':
'src/__fitpack.h'
non-existing path in 'interpolate':
'src/multipack.h'
non-existing path in 'interpolate':
'src/fitpack.pyf'
non-existing path in 'interpolate':
'src/_interpolate.cpp'
non-existing path in 'interpolate':
'src/interpolate.h'
non-existing path in 'interpolate':
'src'
Appending scipy.interpolate configuration to
scipy
Ignoring attempt to set 'name' (from 'scipy' to
'scipy.interpolate')
non-existing path in 'io':
'numpyiomodule.c'
Appending scipy.io.matlab configuration to scipy.io
Ignoring attempt to set 'name' (from 'scipy.io' to
'scipy.io.matlab')
Appending scipy.io.arff configuration to scipy.io
Ignoring attempt to set 'name' (from 'scipy.io' to
'scipy.io.arff')
Appending scipy.io configuration to
scipy
Ignoring attempt to set 'name' (from 'scipy' to 'scipy.io')
ATLAS version
3.8.3
non-existing path in 'lib/blas':
'fblas.pyf.src'
non-existing path in 'lib/blas':
'fblaswrap.f.src'
could not resolve pattern in 'lib/blas':
'fblas_l?.pyf.src'
non-existing path in 'lib/blas':
'fblas.pyf.src'
non-existing path in 'lib/blas':
'fblaswrap.f.src'
non-existing path in 'lib/blas':
'fblaswrap_veclib_c.c.src'
non-existing path in 'lib/blas':
'cblas.pyf.src'
could not resolve pattern in 'lib/blas':
'cblas_l?.pyf.src'
Appending scipy.lib.blas configuration to
scipy.lib
Ignoring attempt to set 'name' (from 'scipy.lib' to
'scipy.lib.blas')
/usr/lib64/python2.6/site-packages/numpy/distutils/system_info.py:967:
UserWarning:
*********************************************************************
Could not find lapack library within the ATLAS installation.
*********************************************************************
warnings.warn(message)
/usr/lib64/python2.6/site-packages/numpy/distutils/system_info.py:1301:
UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not
found.
Directories to search for the libraries can be specified in
the
numpy/distutils/site.cfg file (section [lapack]) or by
setting
the LAPACK environment
variable.
warnings.warn(LapackNotFoundError.__doc__)
/usr/lib64/python2.6/site-packages/numpy/distutils/system_info.py:1304:
UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not
found.
Directories to search for the sources can be specified in
the
numpy/distutils/site.cfg file (section [lapack_src]) or by
setting
the LAPACK_SRC environment
variable.
warnings.warn(LapackSrcNotFoundError.__doc__)
Traceback (most recent call
last):
File "setup.py", line 32, in
<module>
setup(**configuration(top_path='').todict())
File "setup.py", line 11, in
configuration
config.add_subpackage('lib')
File "/usr/lib64/python2.6/site-packages/numpy/distutils/misc_util.py",
line 852, in add_subpackage
caller_level =
2)
File "/usr/lib64/python2.6/site-packages/numpy/distutils/misc_util.py",
line 835, in get_subpackage
caller_level = caller_level +
1)
File "/usr/lib64/python2.6/site-packages/numpy/distutils/misc_util.py",
line 782, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "/usr/lib64/python2.6/site-packages/scipy/lib/setup.py", line 8, in
configuration
config.add_subpackage('lapack')
File "/usr/lib64/python2.6/site-packages/numpy/distutils/misc_util.py",
line 852, in add_subpackage
caller_level = 2)
File "/usr/lib64/python2.6/site-packages/numpy/distutils/misc_util.py",
line 835, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib64/python2.6/site-packages/numpy/distutils/misc_util.py",
line 782, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "/usr/lib64/python2.6/site-packages/scipy/lib/lapack/setup.py", line
32, in configuration
lapack_opt = get_info('lapack_opt',notfound_action=2)
File "/usr/lib64/python2.6/site-packages/numpy/distutils/system_info.py",
line 303, in get_info
return cl().get_info(notfound_action)
File "/usr/lib64/python2.6/site-packages/numpy/distutils/system_info.py",
line 454, in get_info
raise self.notfounderror,self.notfounderror.__doc__
numpy.distutils.system_info.LapackNotFoundError:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
2009/8/29 David Cournapeau <cournape at gmail.com>
> On Fri, Aug 28, 2009 at 10:16 AM, Kristian Hans
> Sandberg<Kristian.Sandberg at colorado.edu> wrote:
> >
> > Thank Neil! However, this is really funny: When I run it inside gdb, it
> works, but when I run it outside gdb, it crashes. See printout below:
>
> Build a debug scipy (python setup.py build_ext -g install) and run the
> test under valgrind, this should gives us useful information.
>
> cheers,
>
> David
> _______________________________________________
> SciPy-User mailing list
> SciPy-User at scipy.org
> http://mail.scipy.org/mailman/listinfo/scipy-user
>
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