[SciPy-user] Error when install SciPy on OS X 10.5.6
Chensong Zhang
zhangchensong at gmail.com
Wed May 13 02:04:40 EDT 2009
Thanks for your comment. But I installed numpy from svn also.
Best
Chensong
====================================
Mathematics Department
Penn State University, State College, PA
email: zhangchensong at gmail.com
web: zhangcs.wordpress.com
====================================
On May 12, 2009, at 9:51 PM, David Cournapeau wrote:
> Chensong Zhang wrote:
>> Mac OS X 10.5.6
>>
>> svn current version of scipy
>>
>> gcc --version
>> i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5490)
>>
>> gfortran --version
>> GNU Fortran (GCC) 4.3.3
>>
>> Warning: No configuration returned, assuming unavailable.
>> blas_opt_info:
>> FOUND:
>> extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
>> define_macros = [('NO_ATLAS_INFO', 3)]
>> extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/
>> vecLib.framework/Headers']
>>
>> lapack_opt_info:
>> FOUND:
>> extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
>> define_macros = [('NO_ATLAS_INFO', 3)]
>> extra_compile_args = ['-msse3']
>>
>> umfpack_info:
>> libraries umfpack not found in /System/Library/Frameworks/
>> Python.framework/Versions/2.5/lib
>> libraries umfpack not found in /usr/local/lib
>> libraries umfpack not found in /usr/lib
>> libraries umfpack not found in /sw/lib
>> /System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/
>> python/numpy/distutils/system_info.py:401: UserWarning:
>> UMFPACK sparse solver (http://www.cise.ufl.edu/research/sparse/umfpack/
>> )
>> not found. Directories to search for the libraries can be
>> specified in the
>> numpy/distutils/site.cfg file (section [umfpack]) or by setting
>> the UMFPACK environment variable.
>> warnings.warn(self.notfounderror.__doc__)
>> NOT AVAILABLE
>>
>> running build_src
>> building py_modules sources
>> building library "dfftpack" sources
>> building library "fftpack" sources
>> building library "linpack_lite" sources
>> building library "mach" sources
>> building library "quadpack" sources
>> building library "odepack" sources
>> building library "dop" sources
>> building library "fitpack" sources
>> building library "odrpack" sources
>> building library "minpack" sources
>> building library "rootfind" sources
>> building library "superlu_src" sources
>> building library "arpack" sources
>> building library "sc_c_misc" sources
>> building library "sc_cephes" sources
>> building library "sc_mach" sources
>> building library "sc_toms" sources
>> building library "sc_amos" sources
>> building library "sc_cdf" sources
>> building library "sc_specfun" sources
>> building library "statlib" sources
>> building extension "scipy.cluster._vq" sources
>> building extension "scipy.cluster._hierarchy_wrap" sources
>> building extension "scipy.fftpack._fftpack" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.fftpack.convolve" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.integrate._quadpack" sources
>> building extension "scipy.integrate._odepack" sources
>> building extension "scipy.integrate.vode" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.integrate.dop" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.interpolate._fitpack" sources
>> building extension "scipy.interpolate.dfitpack" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> adding 'build/src.macosx-10.5-i386-2.5/scipy/interpolate/src/
>> dfitpack-f2pywrappers.f' to sources.
>> building extension "scipy.interpolate._interpolate" sources
>> building extension "scipy.io.numpyio" sources
>> building extension "scipy.lib.blas.fblas" sources
>> f2py options: ['skip:', ':']
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> adding 'build/src.macosx-10.5-i386-2.5/build/src.macosx-10.5-
>> i386-2.5/scipy/lib/blas/fblas-f2pywrappers.f' to sources.
>> building extension "scipy.lib.blas.cblas" sources
>> adding 'build/src.macosx-10.5-i386-2.5/scipy/lib/blas/cblas.pyf' to
>> sources.
>> f2py options: ['skip:', ':']
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.lib.lapack.flapack" sources
>> f2py options: ['skip:', ':']
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.lib.lapack.clapack" sources
>> adding 'build/src.macosx-10.5-i386-2.5/scipy/lib/lapack/
>> clapack.pyf' to sources.
>> f2py options: ['skip:', ':']
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.lib.lapack.calc_lwork" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.lib.lapack.atlas_version" sources
>> building extension "scipy.linalg.fblas" sources
>> adding 'build/src.macosx-10.5-i386-2.5/scipy/linalg/fblas.pyf' to
>> sources.
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> adding 'build/src.macosx-10.5-i386-2.5/build/src.macosx-10.5-
>> i386-2.5/scipy/linalg/fblas-f2pywrappers.f' to sources.
>> building extension "scipy.linalg.cblas" sources
>> adding 'build/src.macosx-10.5-i386-2.5/scipy/linalg/cblas.pyf' to
>> sources.
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.linalg.flapack" sources
>> adding 'build/src.macosx-10.5-i386-2.5/scipy/linalg/flapack.pyf' to
>> sources.
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> adding 'build/src.macosx-10.5-i386-2.5/build/src.macosx-10.5-
>> i386-2.5/scipy/linalg/flapack-f2pywrappers.f' to sources.
>> building extension "scipy.linalg.clapack" sources
>> adding 'build/src.macosx-10.5-i386-2.5/scipy/linalg/clapack.pyf' to
>> sources.
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.linalg._flinalg" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.linalg.calc_lwork" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.linalg.atlas_version" sources
>> building extension "scipy.odr.__odrpack" sources
>> building extension "scipy.optimize._minpack" sources
>> building extension "scipy.optimize._zeros" sources
>> building extension "scipy.optimize._lbfgsb" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.optimize.moduleTNC" sources
>> building extension "scipy.optimize._cobyla" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.optimize.minpack2" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.optimize._slsqp" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.optimize._nnls" sources
>> f2py options: []
>> adding 'build/src.macosx-10.5-i386-2.5/fortranobject.c' to sources.
>> adding 'build/src.macosx-10.5-i386-2.5' to include_dirs.
>> building extension "scipy.signal.sigtools" sources
>> conv_template:> build/src.macosx-10.5-i386-2.5/scipy/signal/
>> lfilter.inc
>> Traceback (most recent call last):
>> File "setup.py", line 158, in <module>
>> setup_package()
>> File "setup.py", line 150, in setup_package
>> configuration=configuration )
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/
>> Extras/lib/python/numpy/distutils/core.py", line 174, in setup
>> return old_setup(**new_attr)
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/
>> python2.5/distutils/core.py", line 151, in setup
>> dist.run_commands()
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/
>> python2.5/distutils/dist.py", line 974, in run_commands
>> self.run_command(cmd)
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/lib/
>> python2.5/distutils/dist.py", line 994, in run_command
>> cmd_obj.run()
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/
>> Extras/lib/python/numpy/distutils/command/build_src.py", line 87,
>> in run
>> self.build_sources()
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/
>> Extras/lib/python/numpy/distutils/command/build_src.py", line 106, in
>> build_sources
>> self.build_extension_sources(ext)
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/
>> Extras/lib/python/numpy/distutils/command/build_src.py", line 214, in
>> build_extension_sources
>> sources = self.template_sources(sources, ext)
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/
>> Extras/lib/python/numpy/distutils/command/build_src.py", line 322, in
>> template_sources
>> outstr = process_c_file(source)
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/
>> Extras/lib/python/numpy/distutils/conv_template.py", line 191, in
>> process_file
>> % (sourcefile, process_str(''.join(lines))))
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/
>> Extras/lib/python/numpy/distutils/conv_template.py", line 156, in
>> process_str
>> newstr[sub[0]:sub[1]], sub[4])
>> File "/System/Library/Frameworks/Python.framework/Versions/2.5/
>> Extras/lib/python/numpy/distutils/conv_template.py", line 120, in
>> expand_sub
>> for k in range(numsubs):
>> TypeError: range() integer end argument expected, got NoneType.
>>
>>
>
> You are more than likely using an old numpy. Scipy svn requires
> numpy 1.3.0
>
> cheers,
>
> David
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