[SciPy-User] Building SciPy on Debian with Intel compilers

Klonuo Umom klonuo at gmail.com
Mon Jul 11 13:31:08 EDT 2011


I ended this frustration, by commenting 'scipy/sparse/sparsetools/setup.py':

  #~ for fmt in ['csr','csc','coo','bsr','dia','csgraph']:
  for fmt in ['coo','dia']:

so that only two modules are availabe in sparsetools, as other could
not be compiled

It's a bad feeling when trying to optimize build and then end with
slightly crippled package, but this is too complex for me to handle it
differently, with my current skills and lacking google helpers.

I still don't know how I compiled scipy 0.10dev, as now I can't, and
tried any possible combinations with Intel variables that I remember
using the other day.

In summary, I have numpy 1.6.0 and scipy 0.9.0 MKL builds, where scipy
test shows one error (besides errors in missing sparsetools modules):

  ERROR: Failure: ImportError
(/usr/local/lib/python2.6/dist-packages/scipy/linalg/atlas_version.so:
undefined symbol: ATL_buildinfo)

and two failures in:

  test_basic.TestIfftnSingle
  test_basic.TestCephes

which I guess aren't alarming



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