[SciPy-User] opening a hdf5 file using h5py

Bala subramanian bala.biophysics at gmail.com
Sat Jun 18 11:28:06 EDT 2011


Friends,
I am a newbie to using hdf5 files. I need to work on hdf5 format file. To do
this, i installed h5py and numpy (in fedora 14) and to make sure if it
works, I tried to open a hdf5 format file using the following code as given
in the example section of h5py home page.

#!/usr/bin/env python
import h5py
f=h5py.File('eg.hdf5','r')

I am getting the following error. Someone kindly write me what is the
problem here. I tried to google the error but i am not understanding what is
going wrong.

Traceback (most recent call last):
  File "test.py", line 4, in <module>
    f=h5py.File('eg.hdf5','r')
  File
"/usr/lib64/python2.7/site-packages/h5py-1.3.1-py2.7-linux-x86_64.egg/h5py/highlevel.py",
line 797, in __init__
    self.fid = self._generate_fid(name, mode, plist)
  File
"/usr/lib64/python2.7/site-packages/h5py-1.3.1-py2.7-linux-x86_64.egg/h5py/highlevel.py",
line 831, in _generate_fid
    fid = h5f.open(name, h5f.ACC_RDONLY, fapl=plist)
  File "h5f.pyx", line 68, in h5py.h5f.open (h5py/h5f.c:1268)
h5py.h5e.LowLevelIOError: Unable to find a valid file signature (Low-level
I/O: Unable to initialize object)
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