[SciPy-User] Error installing SciPy 0.9.0 on MacOS 10.6 with 64-bit python.org Python 3.2
Eric Miller
elmiller at ece.tufts.edu
Thu Jun 30 16:18:56 EDT 2011
Just in the last week I have been playing around installing python and
all it's scientific tools using Homebrew. See this link
<http://www.incm.cnrs-mrs.fr/LaurentPerrinet/SciBlog/2011-05-04> as well
as this one
<http://bitboxer.de/2010/06/03/moving-from-macports-to-homebrew/> for
some directions. Everything works up to and including scipy.
Matplotlib required some extra work as did Mayavi. I can provide
details if you decide to go this route.
Best
Eric
On 6/30/11 4:07 PM, Hans-Martin v. Gaudecker wrote:
> Hi,
>
> Installation under the specification above and the recommended gfortran compiler fails on my MacBook Pro (Core2 Duo) with the error message pasted below. This happens either during "python setup.py build", as suggested in the instructions, or during "install" (doing that directly was suggested on an earlier thread). Any pointers would be greatly appreciated.
>
> FWIW, I installed NumPy just before trying SciPy and all its tests pass.
>
> Thanks,
> Hans-Martin
>
>
> echo $FFLAGS
> -arch x86_64
> echo $LDFLAGS
> -arch x86_64
>
> /usr/local/bin/gfortran -v
> Using built-in specs.
> Target: i686-apple-darwin8
> Configured with: /Builds/unix/gcc/gcc-4.2/configure --prefix=/usr/local --mandir=/share/man --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --build=i686-apple-darwin8 --host=i686-apple-darwin8 --target=i686-apple-darwin8 --enable-languages=fortran
> Thread model: posix
> gcc version 4.2.3
>
>
>
> /usr/local/bin/gfortran -Wall -arch x86_64 build/temp.macosx-10.6-intel-3.2/build/src.macosx-10.6-intel-3.2/scipy/fftpack/_fftpackmodule.o build/temp.macosx-10.6-intel-3.2/scipy/fftpack/src/zfft.o build/temp.macosx-10.6-intel-3.2/scipy/fftpack/src/drfft.o build/temp.macosx-10.6-intel-3.2/scipy/fftpack/src/zrfft.o build/temp.macosx-10.6-intel-3.2/scipy/fftpack/src/zfftnd.o build/temp.macosx-10.6-intel-3.2/build/src.macosx-10.6-intel-3.2/scipy/fftpack/src/dct.o build/temp.macosx-10.6-intel-3.2/build/src.macosx-10.6-intel-3.2/fortranobject.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -Lbuild/temp.macosx-10.6-intel-3.2 -ldfftpack -lfftpack -lgfortran -o build/lib.macosx-10.6-intel-3.2/scipy/fftpack/_fftpack.so
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> _f2py_rout__fftpack_destroy_cfft_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_drfft_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_zfftnd_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_zfft_cache in _fftpackmodule.o
> _f2py_rout__fftpack_dct3 in _fftpackmodule.o
> _f2py_rout__fftpack_dct2 in _fftpackmodule.o
> _f2py_rout__fftpack_dct1 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct3 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct2 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct1 in _fftpackmodule.o
> _f2py_rout__fftpack_crfft in _fftpackmodule.o
> _f2py_rout__fftpack_rfft in _fftpackmodule.o
> _f2py_rout__fftpack_cfft in _fftpackmodule.o
> _f2py_rout__fftpack_zrfft in _fftpackmodule.o
> _f2py_rout__fftpack_drfft in _fftpackmodule.o
> _f2py_rout__fftpack_zfft in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> "_PyType_Type", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> "_PySequence_GetItem", referenced from:
> _int_from_pyobj in _fftpackmodule.o
> "_PyMem_Free", referenced from:
> _fortran_dealloc in fortranobject.o
> "_PyErr_NewException", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> "_PyObject_Type", referenced from:
> _array_from_pyobj in fortranobject.o
> "_PyErr_Clear", referenced from:
> _int_from_pyobj in _fftpackmodule.o
> _fortran_repr in fortranobject.o
> _F2PyCapsule_AsVoidPtr in fortranobject.o
> _F2PyCapsule_FromVoidPtr in fortranobject.o
> _F2PyDict_SetItemString in fortranobject.o
> _fortran_getattr in fortranobject.o
> "_PyExc_AttributeError", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> _fortran_setattr in fortranobject.o
> _fortran_setattr in fortranobject.o
> "_PyDict_SetItemString", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _F2PyDict_SetItemString in fortranobject.o
> _fortran_setattr in fortranobject.o
> _fortran_getattr in fortranobject.o
> _fortran_getattr in fortranobject.o
> _PyFortranObject_New in fortranobject.o
> "_PyErr_Format", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _fortran_call in fortranobject.o
> _fortran_call in fortranobject.o
> "_PyObject_GenericGetAttr", referenced from:
> _fortran_getattr in fortranobject.o
> "_PyModule_Create2", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> "_PyObject_Str", referenced from:
> _array_from_pyobj in fortranobject.o
> "_PySequence_Check", referenced from:
> _int_from_pyobj in _fftpackmodule.o
> "_PyObject_GetAttrString", referenced from:
> _int_from_pyobj in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _fortran_repr in fortranobject.o
> "_PyExc_TypeError", referenced from:
> _fortran_call in fortranobject.o
> _array_from_pyobj in fortranobject.o
> "_PyCapsule_GetPointer", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> _F2PyCapsule_AsVoidPtr in fortranobject.o
> "_PyBytes_FromString", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> "_PyDict_DelItemString", referenced from:
> _fortran_setattr in fortranobject.o
> "_PyCapsule_New", referenced from:
> _F2PyCapsule_FromVoidPtr in fortranobject.o
> _fortran_getattr in fortranobject.o
> "_PyDict_New", referenced from:
> _PyFortranObject_NewAsAttr in fortranobject.o
> _fortran_setattr in fortranobject.o
> _PyFortranObject_New in fortranobject.o
> _PyFortranObject_New in fortranobject.o
> "_PyErr_Occurred", referenced from:
> _f2py_rout__fftpack_destroy_dct1_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_dct2_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_ddct1_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_ddct2_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_rfft_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_cfftnd_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_cfft_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_drfft_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_zfftnd_cache in _fftpackmodule.o
> _f2py_rout__fftpack_destroy_zfft_cache in _fftpackmodule.o
> _int_from_pyobj in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _f2py_rout__fftpack_dct3 in _fftpackmodule.o
> _f2py_rout__fftpack_dct3 in _fftpackmodule.o
> _f2py_rout__fftpack_dct2 in _fftpackmodule.o
> _f2py_rout__fftpack_dct2 in _fftpackmodule.o
> _f2py_rout__fftpack_dct1 in _fftpackmodule.o
> _f2py_rout__fftpack_dct1 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct3 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct3 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct2 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct2 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct1 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct1 in _fftpackmodule.o
> _f2py_rout__fftpack_crfft in _fftpackmodule.o
> _f2py_rout__fftpack_crfft in _fftpackmodule.o
> _f2py_rout__fftpack_rfft in _fftpackmodule.o
> _f2py_rout__fftpack_rfft in _fftpackmodule.o
> _f2py_rout__fftpack_cfft in _fftpackmodule.o
> _f2py_rout__fftpack_cfft in _fftpackmodule.o
> _f2py_rout__fftpack_zrfft in _fftpackmodule.o
> _f2py_rout__fftpack_zrfft in _fftpackmodule.o
> _f2py_rout__fftpack_drfft in _fftpackmodule.o
> _f2py_rout__fftpack_drfft in _fftpackmodule.o
> _f2py_rout__fftpack_zfft in _fftpackmodule.o
> _f2py_rout__fftpack_zfft in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> _F2PyDict_SetItemString in fortranobject.o
> "_PyType_IsSubtype", referenced from:
> _int_from_pyobj in _fftpackmodule.o
> _array_from_pyobj in fortranobject.o
> "_PyDict_GetItemString", referenced from:
> _fortran_getattr in fortranobject.o
> "_PyUnicodeUCS2_FromString", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> _fortran_repr in fortranobject.o
> _fortran_repr in fortranobject.o
> _fortran_getattr in fortranobject.o
> _fortran_getattr in fortranobject.o
> _fortran_getattr in fortranobject.o
> "__PyObject_New", referenced from:
> _PyFortranObject_NewAsAttr in fortranobject.o
> _PyFortranObject_New in fortranobject.o
> _PyFortranObject_New in fortranobject.o
> "_PyLong_AsLong", referenced from:
> _int_from_pyobj in _fftpackmodule.o
> _int_from_pyobj in _fftpackmodule.o
> "_PyNumber_Long", referenced from:
> _int_from_pyobj in _fftpackmodule.o
> "_PyErr_SetString", referenced from:
> _int_from_pyobj in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _PyInit__fftpack in _fftpackmodule.o
> _f2py_rout__fftpack_dct3 in _fftpackmodule.o
> _f2py_rout__fftpack_dct3 in _fftpackmodule.o
> _f2py_rout__fftpack_dct2 in _fftpackmodule.o
> _f2py_rout__fftpack_dct2 in _fftpackmodule.o
> _f2py_rout__fftpack_dct1 in _fftpackmodule.o
> _f2py_rout__fftpack_dct1 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct3 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct3 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct2 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct2 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct1 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct1 in _fftpackmodule.o
> _f2py_rout__fftpack_crfft in _fftpackmodule.o
> _f2py_rout__fftpack_crfft in _fftpackmodule.o
> _f2py_rout__fftpack_rfft in _fftpackmodule.o
> _f2py_rout__fftpack_rfft in _fftpackmodule.o
> _f2py_rout__fftpack_cfft in _fftpackmodule.o
> _f2py_rout__fftpack_cfft in _fftpackmodule.o
> _f2py_rout__fftpack_zrfft in _fftpackmodule.o
> _f2py_rout__fftpack_zrfft in _fftpackmodule.o
> _f2py_rout__fftpack_drfft in _fftpackmodule.o
> _f2py_rout__fftpack_drfft in _fftpackmodule.o
> _f2py_rout__fftpack_zfft in _fftpackmodule.o
> _f2py_rout__fftpack_zfft in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> _array_from_pyobj in fortranobject.o
> _array_from_pyobj in fortranobject.o
> _fortran_setattr in fortranobject.o
> _fortran_setattr in fortranobject.o
> "_PyUnicodeUCS2_FromFormat", referenced from:
> _fortran_repr in fortranobject.o
> "_PyBytes_AsString", referenced from:
> _array_from_pyobj in fortranobject.o
> "_PyUnicodeUCS2_Concat", referenced from:
> _fortran_getattr in fortranobject.o
> "_PyComplex_Type", referenced from:
> _int_from_pyobj in _fftpackmodule.o
> "__Py_NoneStruct", referenced from:
> _f2py_rout__fftpack_dct3 in _fftpackmodule.o
> _f2py_rout__fftpack_dct2 in _fftpackmodule.o
> _f2py_rout__fftpack_dct1 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct3 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct2 in _fftpackmodule.o
> _f2py_rout__fftpack_ddct1 in _fftpackmodule.o
> _f2py_rout__fftpack_crfft in _fftpackmodule.o
> _f2py_rout__fftpack_rfft in _fftpackmodule.o
> _f2py_rout__fftpack_cfft in _fftpackmodule.o
> _f2py_rout__fftpack_zrfft in _fftpackmodule.o
> _f2py_rout__fftpack_drfft in _fftpackmodule.o
> _f2py_rout__fftpack_zfft in _fftpackmodule.o
> _f2py_rout__fftpack_zfftnd in _fftpackmodule.o
> _f2py_rout__fftpack_cfftnd in _fftpackmodule.o
> _array_from_pyobj in fortranobject.o
> _array_from_pyobj in fortranobject.o
> _fortran_setattr in fortranobject.o
> _fortran_getattr in fortranobject.o
> "_PyCapsule_Type", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> _F2PyCapsule_Check in fortranobject.o
> "_PyExc_ValueError", referenced from:
> _array_from_pyobj in fortranobject.o
> "_PyModule_GetDict", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> "_PyErr_Print", referenced from:
> _PyInit__fftpack in _fftpackmodule.o
> _F2PyDict_SetItemString in fortranobject.o
> ld: symbol(s) not found
> collect2: ld returned 1 exit status
> error: Command "/usr/local/bin/gfortran -Wall -arch x86_64 build/temp.macosx-10.6-intel-3.2/build/src.macosx-10.6-intel-3.2/scipy/fftpack/_fftpackmodule.o build/temp.macosx-10.6-intel-3.2/scipy/fftpack/src/zfft.o build/temp.macosx-10.6-intel-3.2/scipy/fftpack/src/drfft.o build/temp.macosx-10.6-intel-3.2/scipy/fftpack/src/zrfft.o build/temp.macosx-10.6-intel-3.2/scipy/fftpack/src/zfftnd.o build/temp.macosx-10.6-intel-3.2/build/src.macosx-10.6-intel-3.2/scipy/fftpack/src/dct.o build/temp.macosx-10.6-intel-3.2/build/src.macosx-10.6-intel-3.2/fortranobject.o -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -Lbuild/temp.macosx-10.6-intel-3.2 -ldfftpack -lfftpack -lgfortran -o build/lib.macosx-10.6-intel-3.2/scipy/fftpack/_fftpack.so" failed with exit status 1
>
>
>
> _______________________________________________
> SciPy-User mailing list
> SciPy-User at scipy.org
> http://mail.scipy.org/mailman/listinfo/scipy-user
--
==========================================================
Prof. Eric Miller
Dept. of Electrical and Computer Engineering
Associate Dean of Research, Tufts School of Engineering
Email: elmiller at ece.tufts.edu
Web: http://www.ece.tufts.edu/~elmiller/elmhome/
Phone: 617.627.0835
FAX: 617.627.3220
Ground: Halligan Hall, 161 College Ave., Medford Ma, 02155
==========================================================
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