[SciPy-User] Installing SciPy version 0.13.0b1: 1 test fail

Mon Oct 7 15:11:56 EDT 2013

Installing SciPy version 0.13.0b1 ended with a fail test message [1]
which does not look too critical as the numerical values match
close to single precision.

I am curious, however, about a deprecated message given at the
beginning of the test:

"
 DeprecationWarning: `scipy.lib.lapack` is deprecated, use `scipy.linalg.lapack
`" and a few others.

How we are suppose to fix that in using scipy?

Sergio
[1]

======================================================================^M
FAIL: test_qz_complex64 (test_decomp.TestQZ)^M
----------------------------------------------------------------------^M
Traceback (most recent call last):^M
 File "/home/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/scipy/li
nalg/tests/test_decomp.py", line 1781, in test_qz_complex64^M
 assert_array_almost_equal(dot(dot(Q,AA),Z.conjugate().T), A)^M
 File "/home/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/numpy/te
sting/utils.py", line 812, in assert_array_almost_equal^M
 header=('Arrays are not almost equal to %d decimals' % decimal))^M
 File "/home/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/numpy/te
sting/utils.py", line 645, in assert_array_compare^M
 raise AssertionError(msg)^M
AssertionError: ^M
Arrays are not almost equal to 6 decimals^M
^M
(mismatch 4.0%)^M
 x: array([[ 0.92961568+0.729689j , 0.31637624+0.99401343j,^M
 0.18391913+0.67687303j, 0.20456031+0.79082209j,^M
 0.56772494+0.17091393j],...^M
 y: array([[ 0.92961609+0.72968906j, 0.31637555+0.99401456j,^M
 0.18391882+0.67687368j, 0.20456028+0.79082251j,^M
 0.56772500+0.17091426j],...^M
^M
----------------------------------------------------------------------^M
Ran 9902 tests in 895.284s^M
^M
FAILED (KNOWNFAIL=131, SKIP=324, failures=1)^M
<nose.result.TextTestResult run=9902 errors=0 failures=1>^M

Python 2.7.3 (default, Sep 30 2013, 13:55:58) ^M
[GCC 4.6.3] on linux2^M
Type "help", "copyright", "credits" or "license" for more information.^M

Type "help", "copyright", "credits" or "license" for more information.^M
>>> import scipy^M
>>> scipy.show_config()^M
amd_info:^M
 libraries = ['amd']^M
 library_dirs = ['/home/myProg/NumLibs64b/lib']^M
 define_macros = [('SCIPY_AMD_H', None)]^M
 swig_opts = ['-I/home/myProg/NumLibs64b/include']^M
 include_dirs = ['/home/myProg/NumLibs64b/include']^M
umfpack_info:^M
 libraries = ['umfpack', 'amd']^M
 library_dirs = ['/home/myProg/NumLibs64b/lib']^M
 define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)]^M
 swig_opts = ['-I/home/myProg/NumLibs64b/include', '-I/home/myProg/NumLibs64
b/include']^M
 include_dirs = ['/home/myProg/NumLibs64b/include']^M
atlas_threads_info:^M
 libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']^M
 library_dirs = ['/home/myProg/NumLibs64b/lib']^M
 define_macros = [('NO_ATLAS_INFO', -1)]^M
 language = f77^M
 include_dirs = ['/home/myProg/NumLibs64b/include']^M
blas_opt_info:^M
 libraries = ['ptf77blas', 'ptcblas', 'atlas']^M
 library_dirs = ['/home/myProg/NumLibs64b/lib']^M
 define_macros = [('NO_ATLAS_INFO', -1)]^M
 language = c^M
 include_dirs = ['/home/myProg/NumLibs64b/include']^M
atlas_blas_threads_info:^M
 libraries = ['ptf77blas', 'ptcblas', 'atlas']^M
 library_dirs = ['/home/myProg/NumLibs64b/lib']^M
 define_macros = [('NO_ATLAS_INFO', -1)]^M
 language = c^M
 include_dirs = ['/home/myProg/NumLibs64b/include']^M
lapack_opt_info:^M
 libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']^M
 library_dirs = ['/home/myProg/NumLibs64b/lib']^M
 define_macros = [('NO_ATLAS_INFO', -1)]^M
 language = f77^M
 include_dirs = ['/home/myProg/NumLibs64b/include']^M
lapack_mkl_info:^M
 NOT AVAILABLE^M
blas_mkl_info:^M
 NOT AVAILABLE^M
mkl_info:^M
 NOT AVAILABLE^M
>>> scipy.test('full', verbose=2)^M
Running unit tests for scipy^M
NumPy version 1.7.0^M
NumPy is installed in /home/myProg/Python273GNU/Linux64b/lib/python2.7/site-pac
kages/numpy^M
SciPy version 0.13.0b1^M
SciPy is installed in /home/myProg/Python273GNU/Linux64b/lib/python2.7/site-pac
kages/scipy^M
Python version 2.7.3 (default, Sep 30 2013, 13:55:58) [GCC 4.6.3]^M
nose version 1.3.0^M
/home/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/numpy/lib/utils.
py:139: DeprecationWarning: `scipy.lib.blas` is deprecated, use `scipy.linalg.b
las` instead!^M
 warnings.warn(depdoc, DeprecationWarning)^M
/home/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/numpy/lib/utils.
py:139: DeprecationWarning: `scipy.lib.lapack` is deprecated, use `scipy.linalg
.lapack` instead!^M
...
...
======================================================================
FAIL: test_qz_complex64 (test_decomp.TestQZ)
----------------------------------------------------------------------
Traceback (most recent call last):
 File "/home/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/scipy/li
nalg/tests/test_decomp.py", line 1781, in test_qz_complex64
 assert_array_almost_equal(dot(dot(Q,AA),Z.conjugate().T), A)
 File "/home/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/numpy/te
sting/utils.py", line 812, in assert_array_almost_equal
 header=('Arrays are not almost equal to %d decimals' % decimal))
 File "/home/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/numpy/te
sting/utils.py", line 645, in assert_array_compare
 raise AssertionError(msg)
AssertionError:
Arrays are not almost equal to 6 decimals

(mismatch 4.0%)
 x: array([[ 0.92961568+0.729689j , 0.31637624+0.99401343j,
 0.18391913+0.67687303j, 0.20456031+0.79082209j,
 0.56772494+0.17091393j],...
 y: array([[ 0.92961609+0.72968906j, 0.31637555+0.99401456j,
 0.18391882+0.67687368j, 0.20456028+0.79082251j,
 0.56772500+0.17091426j],...

----------------------------------------------------------------------
Ran 9902 tests in 895.284s

FAILED (KNOWNFAIL=131, SKIP=324, failures=1)
<nose.result.TextTestResult run=9902 errors=0 failures=1>
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