[Spambayes-checkins] spambayes FileCorpus.py,NONE,1.1
Tim Stone
timstone4@users.sourceforge.net
Sat Nov 16 16:30:23 2002
Update of /cvsroot/spambayes/spambayes
In directory usw-pr-cvs1:/tmp/cvs-serv3745
Added Files:
FileCorpus.py
Log Message:
This module defines classes for the management of message corpora
resident in file systems. Messages can exist in directories as simple files
or as gzip files.
This module also has a test harness for exercising the entire
Bayes/Corpus/FileCorpus set of classes. This harness is useful for
understanding the general use of these classes.
--- NEW FILE: FileCorpus.py ---
#! /usr/bin/env python
'''FileCorpus.py - Corpus composed of file system artifacts
Classes:
FileCorpus - an observable dictionary of FileMessages
ExpiryFileCorpus - a FileCorpus of young files
FileMessage - a subject of Spambayes training
FileMessageFactory - a factory to create FileMessage objects
GzipFileMessage - A FileMessage zipped for less storage
GzipFileMessageFactory - factory to create GzipFileMessage objects
Abstract:
These classes are concrete implementations of the Corpus framework.
FileCorpus is designed to manage corpora that are directories of
message files.
ExpiryFileCorpus is an ExpiryCorpus of file messages.
FileMessage manages messages that are files in the file system.
FileMessageFactory is responsible for the creation of FileMessages,
in response to requests to a corpus for messages.
GzipFileMessage and GzipFileMessageFactory are used to persist messages
as zipped files. This can save a bit of persistent storage, though the
ability of the compresser to do very much deflation is limited due to the
relatively small size of the average textual message. Still, for a large
corpus, this could amount to a significant space savings.
See Corpus.__doc__ for more information.
Test harness:
FileCorpus [options]
options:
-h : show this message
-v : execute in verbose mode, useful for general understanding
and debugging purposes
-g : use GzipFileMessage and GzipFileMessageFactory
-s : setup self test, useful for seeing what is going into the
test
-t : setup and execute a self test.
-c : clean up file system after self test
Please note that running with -s or -t will create file system artifacts
in the current directory. Be sure this doesn't stomp something of
yours... The artifacts created are:
fctestmisc.bayes
fctestclass.bayes
fctestspamcorpus/MSG00001
fctestspamcorpus/MSG00002
fctestunsurecorpus/MSG00003
fctestunsurecorpus/MSG00004
fctestunsurecorpus/MSG00005
fctestunsurecorpus/MSG00006
fctesthamcorpus/
After the test has executed, the following file system artifacts
(should) will exist:
fctestmisc.bayes
fctestclass.bayes
fctestspamcorpus/MSG00001
fctestspamcorpus/MSG00004
fctesthamcorpus/MSG00002
fctesthamcorpus/MSG00005
fctesthamcorpus/MSG00006
fctestunsurecorpus/
To Do:
o Suggestions?
'''
# This module is part of the spambayes project, which is Copyright 2002
# The Python Software Foundation and is covered by the Python Software
# Foundation license.
__author__ = "Tim Stone <tim@fourstonesExpressions.com>"
__credits__ = "Richie Hindle, Tim Peters, all the spambayes contributors."
from __future__ import generators
import Corpus
import Bayes
import sys, os, gzip, fnmatch, getopt, errno, time, stat
class FileCorpus(Corpus.Corpus):
def __init__(self, factory, directory, filter='*', cacheSize=250):
'''Constructor(FileMessageFactory, corpus directory name, fnmatch
filter'''
Corpus.Corpus.__init__(self, factory, cacheSize)
self.directory = directory
self.filter = filter
# This assumes that the directory exists. A horrible death occurs
# otherwise. We *could* simply create it, but that will likely only
# mask errors
# This will not pick up any changes to the corpus that are made
# through the file system. The key list is established in __init__,
# and if anybody stores files in the directory, even if they match
# the filter, they won't make it into the key list. The same
# problem exists if anybody removes files. This *could* be a problem.
# If so, we can maybe override the keys() method to account for this,
# but there would be training side-effects... The short of it is that
# corpora that are managed by FileCorpus should *only* be managed by
# FileCorpus (at least for now). External changes that must be made
# to the corpus should for the moment be handled by a complete
# retraining.
for filename in os.listdir(directory):
if fnmatch.fnmatch(filename, filter):
self.msgs[filename] = None
def makeMessage(self, key):
'''Ask our factory to make a Message'''
msg = self.factory.create(key, self.directory)
return msg
def addMessage(self, message):
'''Add a Message to this corpus'''
if not fnmatch.fnmatch(message.key(), self.filter):
raise ValueError
if Corpus.Verbose:
print 'adding',message.key(),'to corpus'
message.directory = self.directory
message.store()
# superclass processing *MUST* be done
# perform superclass processing *LAST!*
Corpus.Corpus.addMessage(self, message)
def removeMessage(self, message):
'''Remove a Message from this corpus'''
if Corpus.Verbose:
print 'removing',message.key(),'from corpus'
message.remove()
# superclass processing *MUST* be done
# perform superclass processing *LAST!*
Corpus.Corpus.removeMessage(self, message)
def __repr__(self):
'''Instance as a representative string'''
nummsgs = len(self.msgs)
if nummsgs != 1:
s = 's'
else:
s = ''
if Corpus.Verbose and nummsgs > 0:
lst = ', ' + '%s' % (self.keys())
else:
lst = ''
return "<%s object at %8.8x, directory: %s, %s message%s%s>" % \
(self.__class__.__name__, \
id(self), \
self.directory, \
nummsgs, s, lst)
class ExpiryFileCorpus(Corpus.ExpiryCorpus, FileCorpus):
'''FileCorpus of "young" file system artifacts'''
def __init__(self, expireBefore, factory, directory, filter='*', cacheSize=250):
'''Constructor(FileMessageFactory, corpus directory name, fnmatch
filter'''
Corpus.ExpiryCorpus.__init__(self, expireBefore, factory, cacheSize)
FileCorpus.__init__(self, factory, directory, filter, cacheSize)
class FileMessage(Corpus.Message):
'''Message that persists as a file system artifact.'''
def __init__(self,file_name, directory):
'''Constructor(message file name, corpus directory name)'''
self.file_name = file_name
self.directory = directory
self.load()
def pathname(self):
'''Derive the pathname of the message file'''
return os.path.join(self.directory, self.file_name)
def load(self):
'''Read the Message substance from the file'''
if Corpus.Verbose:
print 'loading', self.file_name
pn = self.pathname()
try:
fp = open(pn, 'rb')
except IOError, e:
if e.errno != errno.ENOENT:
raise
else:
self.substance = fp.read()
fp.close()
def store(self):
'''Write the Message substance to the file'''
if Corpus.Verbose:
print 'storing', self.file_name
pn = self.pathname()
fp = open(pn, 'wb')
fp.write(self.substance)
fp.close()
def remove(self):
'''Message hara-kiri'''
if Corpus.Verbose:
print 'physically deleting file',self.pathname()
os.unlink(self.pathname())
def name(self):
'''A unique name for the message'''
return self.file_name
def key(self):
'''The key of this message in the msgs dictionary'''
return self.file_name
def __repr__(self):
'''Instance as a representative string'''
elip = ''
sub = self.substance
if Corpus.Verbose:
sub = self.substance
else:
if len(self.substance) > 20:
sub = self.substance[:20]
if len(self.substance) > 40:
sub += '...' + self.substance[-20:]
pn = os.path.join(self.directory, self.file_name)
return "<%s object at %8.8x, file: %s, %s>" % \
(self.__class__.__name__, \
id(self), pn, sub)
def __str__(self):
'''Instance as a printable string'''
return self.__repr__()
def createTimestamp(self):
'''Return the create timestamp for the file'''
stats = os.stat(self.pathname())
ctime = stats[stat.ST_CTIME]
return ctime
class FileMessageFactory(Corpus.MessageFactory):
'''MessageFactory for FileMessage objects'''
def create(self, key, directory):
'''Create a message object from a filename in a directory'''
return FileMessage(key, directory)
class GzipFileMessage(FileMessage):
'''Message that persists as a zipped file system artifact.'''
def load(self):
'''Read the Message substance from the file'''
if Corpus.Verbose:
print 'loading', self.file_name
pn = self.pathname()
try:
fp = gzip.open(pn, 'rb')
except IOError, e:
if e.errno != errno.ENOENT:
raise
else:
self.substance = fp.read()
fp.close()
def store(self):
'''Write the Message substance to the file'''
if Corpus.Verbose:
print 'storing', self.file_name
pn = self.pathname()
gz = gzip.open(pn, 'wb')
gz.write(self.substance)
gz.flush()
gz.close()
class GzipFileMessageFactory(FileMessageFactory):
'''MessageFactory for FileMessage objects'''
def create(self, key, directory):
'''Create a message object from a filename in a directory'''
return GzipFileMessage(key, directory)
def runTest(useGzip):
print 'Executing Test'
if useGzip:
fmFact = GzipFileMessageFactory()
print 'Executing with Gzipped files'
else:
fmFact = FileMessageFactory()
print 'Executing with uncompressed files'
print '\n\nCreating two Bayes databases'
miscbayes = Bayes.PickledBayes('fctestmisc.bayes')
classbayes = Bayes.DBDictBayes('fctestclass.bayes')
print '\n\nSetting up spam corpus'
spamcorpus = FileCorpus(fmFact, 'fctestspamcorpus')
spamtrainer = Bayes.SpamTrainer(miscbayes)
spamcorpus.addObserver(spamtrainer)
anotherspamtrainer = Bayes.SpamTrainer(classbayes, Bayes.UPDATEPROBS)
spamcorpus.addObserver(anotherspamtrainer)
keys = spamcorpus.keys()
keys.sort()
for key in keys: # iterate the list of keys
msg = spamcorpus[key] # corpus is a dictionary
spamtrainer.train(msg)
anotherspamtrainer.train(msg)
print '\n\nSetting up ham corpus'
hamcorpus = FileCorpus(fmFact, \
'fctesthamcorpus', \
'MSG*')
hamtrainer = Bayes.HamTrainer(miscbayes)
hamcorpus.addObserver(hamtrainer)
hamtrainer.trainAll(hamcorpus)
print '\n\nAdd a message to hamcorpus that does not match the filter'
if useGzip:
fmClass = GzipFileMessage
else:
fmClass = FileMessage
m1 = fmClass('XMG00001', 'fctestspamcorpus')
try:
hamcorpus.addMessage(m1)
except ValueError:
print 'Add failed, test passed'
else:
print 'Add passed, test failed'
print '\n\nThis is the hamcorpus'
print hamcorpus
print '\n\nThis is the spamcorpus'
print spamcorpus
print '\n\nSetting up unsure corpus'
# the unsure corpus is an expiry corpus with five second expiry
# and a cache size of 2 (for testing purposes only...), and
# no trainers, since there's no such thing as 'unsure training'
unsurecorpus = ExpiryFileCorpus(5, fmFact, \
'fctestunsurecorpus', 'MSG*', 2)
print '\n\nIterate the unsure corpus, to make sure cache size \
is managed correctly. We should not see MSG00003 in this iteration.'
for msg in unsurecorpus:
print msg.key() # don't print msg, too much information
for msg in unsurecorpus:
print msg.key() # don't print msg, too much information
print '\n\nIterate the unsure corpus with a filter, to make sure \
the filtering mechanism is working correctly. We should not see \
MSG00004 in this iteration.'
# unsurecorpus.setFilter('richie')
for msg in unsurecorpus:
print msg.key() # don't print msg, too much information
print '\n\nRemoving expired messages from unsure corpus.'
unsurecorpus.removeExpiredMessages()
print '\n\nTrain with an individual message'
anotherhamtrainer = Bayes.HamTrainer(classbayes)
anotherhamtrainer.train(unsurecorpus['MSG00005'])
print '\n\nMoving msg00002 from spamcorpus to hamcorpus'
hamcorpus.takeMessage('MSG00002', spamcorpus) # Oops. made a mistake...
print "\n\nLet's test printing a message"
msg = spamcorpus['MSG00001']
print msg
print '\n\nClassifying messages in unsure corpus'
for msg in unsurecorpus:
type = classbayes.classify(msg)
print 'Message %s spam probability is %f' % (msg.key(), msg.spamprob)
if type == 'ham':
print 'Moving %s from unsurecorpus to hamcorpus, \
based on prob of %f' % (msg.key(), msg.spamprob)
hamcorpus.takeMessage(msg.key(), unsurecorpus)
elif type == 'spam':
print 'Moving %s from unsurecorpus to spamcorpus, \
based on prob of %f' % (msg.key(), msg.spamprob)
spamcorpus.takeMessage(msg.key(), unsurecorpus)
print '\n\nThis is the new hamcorpus'
print hamcorpus
print '\n\nThis is the new spamcorpus'
print spamcorpus
print '\n\nThis is the new unsurecorpus'
print unsurecorpus
print 'unsurecorpus cache contains', unsurecorpus.keysInMemory
print 'unsurecorpus msgs dict contains', unsurecorpus.msgs
print '\n\nUpdating and storing bayes databases'
miscbayes.update_probabilities() # if we don't, training is forgotten
miscbayes.store()
classbayes.store()
def cleanupTest():
print 'Cleaning up'
cleanupDirectory('fctestspamcorpus')
cleanupDirectory('fctesthamcorpus')
cleanupDirectory('fctestunsurecorpus')
if not useExistingDB:
try:
os.unlink('fctestmisc.bayes')
except OSError, e:
if e.errno != 2: # errno.<WHAT>
raise
try:
os.unlink('fctestclass.bayes')
except OSError, e:
if e.errno != 2: # errno.<WHAT>
raise
def cleanupDirectory(dirname):
try:
flist = os.listdir(dirname)
except OSError, e:
if e.errno != 3: # errno.<WHAT>
raise
else:
for filename in os.listdir(dirname):
fn = os.path.join(dirname, filename)
os.unlink(fn)
try:
os.rmdir(dirname)
except OSError, e:
if e.errno != 2: # errno.<WHAT>
raise
def setupTest(useGzip):
cleanupTest()
print 'Setting up test'
# no try blocks here, because if any of this dies, the test
# cannot proceed
os.mkdir('fctestspamcorpus')
os.mkdir('fctesthamcorpus')
os.mkdir('fctestunsurecorpus')
tm1 = testmsg1()
tm2 = testmsg2()
if useGzip:
fmClass = GzipFileMessage
else:
fmClass = FileMessage
m1 = fmClass('MSG00001', 'fctestspamcorpus')
m1.substance = tm1
m1.store()
m2 = fmClass('MSG00002', 'fctestspamcorpus')
m2.substance = tm2
m2.store()
m3 = fmClass('MSG00003', 'fctestunsurecorpus')
m3.substance = tm1
m3.store()
for x in range(11):
time.sleep(1) # make sure MSG00003 has expired
if 10-x == 1:
s = ''
else:
s = 's'
print 'wait',10-x,'more second%s' % (s)
m4 = fmClass('MSG00004', 'fctestunsurecorpus')
m4.substance = tm1
m4.store()
m5 = fmClass('MSG00005', 'fctestunsurecorpus')
m5.substance = tm2
m5.store()
m6 = fmClass('MSG00006', 'fctestunsurecorpus')
m6.substance = tm2
m6.store()
def testmsg1():
return '''
X-Hd:skip@pobox.com Mon Nov 04 10:50:49 2002
Received:by mail.powweb.com (mbox timstone) (with Cubic Circle's cucipop (v1.31
1998/05/13) Mon Nov 4 08:50:58 2002)
X-From_:skip@mojam.com Mon Nov 4 08:49:03 2002
Return-Path:<skip@mojam.com>
Delivered-To:timstone@mail.powweb.com
Received:from manatee.mojam.com (manatee.mojam.com [199.249.165.175]) by
mail.powweb.com (Postfix) with ESMTP id DC95A1BB1D0 for
<tim@fourstonesExpressions.com>; Mon, 4 Nov 2002 08:49:02 -0800 (PST)
Received:from montanaro.dyndns.org (12-248-11-90.client.attbi.com
[12.248.11.90]) by manatee.mojam.com (8.12.1/8.12.1) with ESMTP id
gA4Gn0oY029655 for <tim@fourstonesExpressions.com>; Mon, 4 Nov 2002 10:49:00
-0600
Received:from montanaro.dyndns.org (localhost [127.0.0.1]) by
montanaro.dyndns.org (8.12.2/8.12.2) with ESMTP id gA4Gn3cP015572 for
<tim@fourstonesExpressions.com>; Mon, 4 Nov 2002 10:49:03 -0600 (CST)
Received:(from skip@localhost) by montanaro.dyndns.org (8.12.2/8.12.2/Submit)
id gA4Gn37l015569; Mon, 4 Nov 2002 10:49:03 -0600 (CST)
From:Skip Montanaro <skip@pobox.com>
MIME-Version:1.0
Content-Type:text/plain; charset=us-ascii
Content- Transfer- Encoding:7bit
Message-ID:<15814.42238.882013.702030@montanaro.dyndns.org>
Date:Mon, 4 Nov 2002 10:49:02 -0600
To:Four Stones Expressions <tim@fourstonesExpressions.com>
Subject:Reformat mail to 80 columns?
In-Reply-To:<QOIDLHRPNK62FBRPA9SM54US7504UR65.3dc5eed1@riven>
References:<8285NLPL5YTTQJGXTAXU3WA8OB2.3dc5e3cc@riven>
<QOIDLHRPNK62FBRPA9SM54US7504UR65.3dc5eed1@riven>
X-Mailer:VM 7.07 under 21.5 (beta9) "brussels sprouts" XEmacs Lucid
Reply-To:skip@pobox.com
X-Hammie- Disposition:Unsure
11/4/2002 10:49:02 AM, Skip Montanaro <skip@pobox.com> wrote:
>(off-list)
>
>Tim,
>
>Any chance you can easily generate messages to the spambayes list which wrap
>at something between 70 and 78 columns? I find I have to always edit your
>messages to read them easily.
>
>Thanks,
>
>--
>Skip Montanaro - skip@pobox.com
>http://www.mojam.com/
>http://www.musi-cal.com/
>
>
- Tim
www.fourstonesExpressions.com '''
def testmsg2():
return '''
X-Hd:richie@entrian.com Wed Nov 06 12:05:41 2002
Received:by mail.powweb.com (mbox timstone) (with Cubic Circle's cucipop (v1.31
1998/05/13) Wed Nov 6 10:05:45 2002)
X-From_:richie@entrian.com Wed Nov 6 10:05:33 2002
Return-Path:<richie@entrian.com>
Delivered-To:timstone@mail.powweb.com
Received:from anchor-post-31.mail.demon.net (anchor-post-31.mail.demon.net
[194.217.242.89]) by mail.powweb.com (Postfix) with ESMTP id 3DC431BB06A for
<tim@fourstonesexpressions.com>; Wed, 6 Nov 2002 10:05:33 -0800 (PST)
Received:from sundog.demon.co.uk ([158.152.226.183]) by
anchor-post-31.mail.demon.net with smtp (Exim 3.35 #1) id 189UYP-000IAw-0V for
tim@fourstonesExpressions.com; Wed, 06 Nov 2002 18:05:25 +0000
From:Richie Hindle <richie@entrian.com>
To:tim@fourstonesExpressions.com
Subject:Re: What to call this training stuff
Date:Wed, 06 Nov 2002 18:05:56 +0000
Organization:entrian.com
Reply-To:richie@entrian.com
Message-ID:<d0hisugn3nau4m704kotgpd4jlt33rvrda@4ax.com>
References:<IFWRHE041VTXW72JGDBD0RTS04YTGE.3dc933a1@riven>
In-Reply-To:<IFWRHE041VTXW72JGDBD0RTS04YTGE.3dc933a1@riven>
X-Mailer:Forte Agent 1.7/32.534
MIME-Version:1.0
Content-Type:text/plain; charset=us-ascii
Content- Transfer- Encoding:7bit
X-Hammie- Disposition:Unsure
Hi Tim,
> Richie, I think we should package these classes I've been writing as
> 'corpusManagement.py' What we're really doing here is creating a set of
tools
> that can be used to manage corpi (?) corpusses (?) corpae (?) whatever...
of
> messages.
Good plan. Minor point of style: mixed-case module names (like class
names) tend to have an initial capital: CorpusManagement.py
On the name... sorry to disagree about names again, but what does the word
'management' add? This is a module for manipulating corpuses, so I reckon
it should be called Corpus. Like Cookie, gzip, zipfile, locale, mailbox...
see what I mean?
--
Richie Hindle
richie@entrian.com'''
if __name__ == '__main__':
try:
opts, args = getopt.getopt(sys.argv[1:], 'estgvhcu')
except getopt.error, msg:
print >>sys.stderr, str(msg) + '\n\n' + __doc__
sys.exit()
Corpus.Verbose = False
runTestServer = False
setupTestServer = False
cleanupTestServer = False
useGzip = False
useExistingDB = False
for opt, arg in opts:
if opt == '-h':
print >>sys.stderr, __doc__
sys.exit()
elif opt == '-s':
setupTestServer = True
elif opt == '-e':
runTestServer = True
elif opt == '-t':
setupTestServer = True
runTestServer = True
elif opt == '-c':
cleanupTestServer = True
elif opt == '-v':
Corpus.Verbose = True
elif opt == '-g':
useGzip = True
elif opt == '-u':
useExistingDB = True
if setupTestServer:
setupTest(useGzip)
if runTestServer:
runTest(useGzip)
elif cleanupTestServer:
cleanupTest()
else:
print >>sys.stderr, __doc__
More information about the Spambayes-checkins
mailing list