Hi Stefanie, Jean-Patrick, et al, I invite you to look at my Skan (skeleton analysis) package. Docs here: https://jni.github.io/skan/ <https://jni.github.io/skan/> Paper here: https://peerj.com/articles/4312/ <https://peerj.com/articles/4312/> (the supplemental info mentions some of the edge cases we’ve taken care of.) Skan is installable with "pip install skan" or "conda install -c conda-forge skan”. I’m working on a new higher level Skeleton class, but it’s a WIP and you’ll need to install from source: https://github.com/jni/skan/blob/5c0d23e5b1eab2fb06b25ff599e98eaa11d621e6/sk... <https://github.com/jni/skan/blob/5c0d23e5b1eab2fb06b25ff599e98eaa11d621e6/sk...> (Not that that’s a big deal since the lib is pure Python.) Comments, suggestions, and contributions are all welcome! Juan.
On 29 Nov 2018, at 8:37 am, Jean-Patrick Pommier <jeanpatrick.pommier@gmail.com> wrote:
I tried this : https://dip4fish.blogspot.com/2014/05/construct-graph-from-skeleton-image-of... <https://dip4fish.blogspot.com/2014/05/construct-graph-from-skeleton-image-of...>
Le mer. 28 nov. 2018 à 19:59, Stefanie Lück <luecks@gmail.com <mailto:luecks@gmail.com>> a écrit : Dear all,
I have a question I use the medial axis skeletonization implementation of scikit-image. Is it possible to get the length of the medial axis and the number of branches growing from the medial axis?
Thank you very much in advance Stefanie
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