scipy.ndimage.interpolation.map_coordinates ( http://docs.scipy.org/doc/scipy/reference/generated/scipy.ndimage.interpolat...) + matplotlib will do what you want. Tom On Thu, Sep 12, 2013 at 11:19 AM, Dan <dkin@walla.co.il> wrote:

Hi,

Is there a way to generate an intensity plot of along the line using scikit-image (like Plot Profile option in imageJ) (example: http://imagej.1557.x6.nabble.com/file/n3682337/cracks.png).

Thanks.

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-- Thomas A Caswell PhD Candidate University of Chicago Nagel and Gardel labs tcaswell@uchicago.edu jfi.uchicago.edu/~tcaswell o: 773.702.7204