I've attached the athinput.kh. Perhaps I didn't set up the domains correctly? Best Regards, Eve On 08/06/2013 12:01 AM, John ZuHone wrote:
Hi Eve,
This is odd. I'm actually getting it to work:
http://i.imgur.com/iMQttWd.png
I don't get it, because it looks like your yt is up to date.
Can you send your athinput.kh?
John
On Aug 6, 2013, at 12:56 AM, Eve Lee <elee@cita.utoronto.ca> wrote:
I've uploaded the figures here:
http://i.imgur.com/7T5N11o.png http://i.imgur.com/nOsLfQ9.png http://i.imgur.com/BfojOOa.png
Best Regards,
Eve
On 08/05/2013 08:56 PM, John ZuHone wrote:
Also, could you send over some of the figures?
John
On Aug 5, 2013, at 11:30 PM, Eve Lee <elee@cita.utoronto.ca> wrote:
Hi John,
Yes, it is. Thank you for your help.
Best Regards,
Eve
On 08/05/2013 08:29 PM, John ZuHone wrote:
Hi Eve,
Is this just the 2-D K-H test simulation with SMR? If I could run it myself it would make it easier to debug.
Best,
John
On Aug 5, 2013, at 5:28 PM, Eve Lee <elee@cita.utoronto.ca> wrote:
Hi John,
Following is the output from yt instinfo
yt module located at: /home/evejlee/.local/lib/python2.7/site-packages/yt-2.6dev-py2.7-linux-x86_64.egg The supplemental repositories are located at: /pfs/sw/yt-x86_64/src/yt-supplemental
The current version of the code is:
--- f936432ed45d yt ---
Best Regards,
Eve
On 08/05/2013 02:22 PM, John ZuHone wrote: > Hi Eve, > > Sorry that you're having trouble! > > Just wanted to check real quick before anything else--which version of yt are you using? Also, are you using the stable branch or the development branch? Support for Athena SMR exists in yt versions 2.5.3 and later. > > Best, > > John > > On Aug 5, 2013, at 5:13 PM, Eve Lee <elee@cita.utoronto.ca> wrote: > >> Hello, >> >> I'm trying to make a slice plot of Athena MPI SMR data using TimeSeriesData, and I find that the code only make slices out of the base level and blanks out deeper level regions. >> >> Following is how I read in the Athena vtk files: >> >> ts = TimeSeriesData.from_filenames('id0/kh*.vtk', parallel=True) >> my_storage={} >> for sto,pf in ts.piter(storage=my_storage): >> slc = SlicePlot(pf, 'z', 'Density') >> slc.set_zlim('Density', 0.0, 3.0) >> num = (pf.h.hierarchy_filename).split('.')[1] >> slc.save('./slice/'+num) >> >> all my vtk files are in id0, ..., idn where n=number of processors I used, and I'm only using 1 more level of refinement. >> >> Thanks in advance! >> >> Best Regards, >> >> Eve >> >> _______________________________________________ >> yt-users mailing list >> yt-users@lists.spacepope.org >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > _______________________________________________ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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