Guys, I am using a script recommended on ENZO boot-camp page $ bash install_script.sh in order to set up all libraries needed for enzo compilation. Everything is going good and well until I got a following error: gcc -fPIC -c bzip2.c In file included from /usr/include/errno.h:36, from bzip2.c:55: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory make: *** [bzip2.o] Error 1 I checked and certainly I don't have such thing as /usr/include/linux/errno.h Any advice ? Thanks, Mark
On 01/30/2013 03:59 PM, Mark Kremenetsky wrote:
Guys, I am using a script recommended on ENZO boot-camp page
$ bash install_script.sh
in order to set up all libraries needed for enzo compilation. Everything is going good and well until I got a following error:
gcc -fPIC -c bzip2.c In file included from /usr/include/errno.h:36, from bzip2.c:55: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory make: *** [bzip2.o] Error 1 I checked and certainly I don't have such thing as /usr/include/linux/errno.h
Any advice ?
on ubuntu you can do % dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries. I've seen quite a few packages give their developers a nice list of how to update their system, something like sudo apt-get install linux-libc-dev ..... peter
And in fact, on Ubuntu the install script will spit out exactly which packages it needs: https://bitbucket.org/yt_analysis/yt/src/0514b030f6479c0adb75df5bf3da7ab7310... It would help to figure out exactly which libraries and packages are needed if you're running a different distribution or a different flavor of UNIX. If this is a shared computer or cluster and you don't have root access it should be possible to get this working but it will probably be a bit more complicated. Cheers, Nathan On Jan 30, 2013, at 1:04 PM, Peter Teuben <teuben@astro.umd.edu> wrote: On 01/30/2013 03:59 PM, Mark Kremenetsky wrote: Guys, I am using a script recommended on ENZO boot-camp page $ bash install_script.sh in order to set up all libraries needed for enzo compilation. Everything is going good and well until I got a following error: gcc -fPIC -c bzip2.c In file included from /usr/include/errno.h:36, from bzip2.c:55: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory make: *** [bzip2.o] Error 1 I checked and certainly I don't have such thing as /usr/include/linux/errno.h Any advice ? on ubuntu you can do % dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries. I've seen quite a few packages give their developers a nice list of how to update their system, something like sudo apt-get install linux-libc-dev ..... peter _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
I have to apologize for not providing OS version that I am running on my system It is SUSE Linux Enterprise Server 11 (x86_64) VERSION = 11 PATCHLEVEL = 2 Mark On 01/30/2013 01:21 PM, Nathan Goldbaum wrote:
And in fact, on Ubuntu the install script will spit out exactly which packages it needs:
https://bitbucket.org/yt_analysis/yt/src/0514b030f6479c0adb75df5bf3da7ab7310...
It would help to figure out exactly which libraries and packages are needed if you're running a different distribution or a different flavor of UNIX.
If this is a shared computer or cluster and you don't have root access it should be possible to get this working but it will probably be a bit more complicated.
Cheers,
Nathan
On Jan 30, 2013, at 1:04 PM, Peter Teuben <teuben@astro.umd.edu <mailto:teuben@astro.umd.edu>> wrote:
On 01/30/2013 03:59 PM, Mark Kremenetsky wrote:
Guys, I am using a script recommended on ENZO boot-camp page
$ bash install_script.sh
in order to set up all libraries needed for enzo compilation. Everything is going good and well until I got a following error:
gcc -fPIC -c bzip2.c In file included from /usr/include/errno.h:36, from bzip2.c:55: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory make: *** [bzip2.o] Error 1 I checked and certainly I don't have such thing as /usr/include/linux/errno.h
Any advice ?
on ubuntu you can do
% dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h
so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries.
I've seen quite a few packages give their developers a nice list of how to update their system, something like
sudo apt-get install linux-libc-dev .....
peter
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_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
of course if you don't have the file you can't use this trick, but the command rpm -qf /usr/include/linux/errno.h would give you the same result as that beforementioned ubuntu example, namely which package you need. I have a SL63 here, whihc is also a redhat derivative, so perhaps close enoiugh to your SUSE. And it responded with kernel-headers-2.6.32-279.19.1.el6.x86_64 which is quite different from my linux-libc-dev. Anyways, maybe you can list your packages with rpm -qa | grep kernel and see if you have something like it On 01/30/2013 04:31 PM, Mark Kremenetsky wrote:
I have to apologize for not providing OS version that I am running on my system It is SUSE Linux Enterprise Server 11 (x86_64) VERSION = 11 PATCHLEVEL = 2 Mark
On 01/30/2013 01:21 PM, Nathan Goldbaum wrote:
And in fact, on Ubuntu the install script will spit out exactly which packages it needs:
https://bitbucket.org/yt_analysis/yt/src/0514b030f6479c0adb75df5bf3da7ab7310...
It would help to figure out exactly which libraries and packages are needed if you're running a different distribution or a different flavor of UNIX.
If this is a shared computer or cluster and you don't have root access it should be possible to get this working but it will probably be a bit more complicated.
Cheers,
Nathan
On Jan 30, 2013, at 1:04 PM, Peter Teuben <teuben@astro.umd.edu <mailto:teuben@astro.umd.edu>> wrote:
On 01/30/2013 03:59 PM, Mark Kremenetsky wrote:
Guys, I am using a script recommended on ENZO boot-camp page
$ bash install_script.sh
in order to set up all libraries needed for enzo compilation. Everything is going good and well until I got a following error:
gcc -fPIC -c bzip2.c In file included from /usr/include/errno.h:36, from bzip2.c:55: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory make: *** [bzip2.o] Error 1 I checked and certainly I don't have such thing as /usr/include/linux/errno.h
Any advice ?
on ubuntu you can do
% dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h
so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries.
I've seen quite a few packages give their developers a nice list of how to update their system, something like
sudo apt-get install linux-libc-dev .....
peter
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Hi all, I wanted to briefly revisit this discussion, as we're in the process of updating the install script to add more tips for distributions. I was wondering if anybody narrowed down the right set of RPMs / etc to install? I'd like to put them in; it's been a while since I've used SUSE but I think we're going to be getting more and more people using it. And thanks for the helpful tip, Peter! I didn't know about rpm -qf or -qa, but now I've put them in my notes file ... :) -Matt On Wed, Jan 30, 2013 at 2:36 PM, Peter Teuben <teuben@astro.umd.edu> wrote:
of course if you don't have the file you can't use this trick, but the command
rpm -qf /usr/include/linux/errno.h
would give you the same result as that beforementioned ubuntu example, namely which package you need. I have a SL63 here, whihc is also a redhat derivative, so perhaps close enoiugh to your SUSE. And it responded with
kernel-headers-2.6.32-279.19.1.el6.x86_64
which is quite different from my linux-libc-dev. Anyways, maybe you can list your packages with
rpm -qa | grep kernel
and see if you have something like it
On 01/30/2013 04:31 PM, Mark Kremenetsky wrote:
I have to apologize for not providing OS version that I am running on my system It is SUSE Linux Enterprise Server 11 (x86_64) VERSION = 11 PATCHLEVEL = 2 Mark
On 01/30/2013 01:21 PM, Nathan Goldbaum wrote:
And in fact, on Ubuntu the install script will spit out exactly which packages it needs:
https://bitbucket.org/yt_analysis/yt/src/0514b030f6479c0adb75df5bf3da7ab7310...
It would help to figure out exactly which libraries and packages are needed if you're running a different distribution or a different flavor of UNIX.
If this is a shared computer or cluster and you don't have root access it should be possible to get this working but it will probably be a bit more complicated.
Cheers,
Nathan
On Jan 30, 2013, at 1:04 PM, Peter Teuben <teuben@astro.umd.edu> wrote:
On 01/30/2013 03:59 PM, Mark Kremenetsky wrote:
Guys,
I am using a script recommended on ENZO boot-camp page
$ bash install_script.sh
in order to set up all libraries needed for enzo compilation.
Everything is going good and well until I got a following error:
gcc -fPIC -c bzip2.c
In file included from /usr/include/errno.h:36,
from bzip2.c:55:
/usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or
directory
make: *** [bzip2.o] Error 1
I checked and certainly I don't have such thing as
/usr/include/linux/errno.h
Any advice ?
on ubuntu you can do
% dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h
so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries.
I've seen quite a few packages give their developers a nice list of how to update their system, something like
sudo apt-get install linux-libc-dev .....
peter
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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all, FWIW, I'm now adding small text files to my own package, so in theory all the user has to do is something like yum install `cat linux/fedora17` or apt-get install `cat linux/ubuntu12.04` it seems within distro's the package names don't change much. I imagine we could come up with a similar mechanism for those we link Fink or MacPorts on the mac. peter On 02/05/2013 04:51 PM, Matthew Turk wrote:
Hi all,
I wanted to briefly revisit this discussion, as we're in the process of updating the install script to add more tips for distributions. I was wondering if anybody narrowed down the right set of RPMs / etc to install? I'd like to put them in; it's been a while since I've used SUSE but I think we're going to be getting more and more people using it. And thanks for the helpful tip, Peter! I didn't know about rpm -qf or -qa, but now I've put them in my notes file ... :)
-Matt
On Wed, Jan 30, 2013 at 2:36 PM, Peter Teuben <teuben@astro.umd.edu> wrote:
of course if you don't have the file you can't use this trick, but the command
rpm -qf /usr/include/linux/errno.h
would give you the same result as that beforementioned ubuntu example, namely which package you need. I have a SL63 here, whihc is also a redhat derivative, so perhaps close enoiugh to your SUSE. And it responded with
kernel-headers-2.6.32-279.19.1.el6.x86_64
which is quite different from my linux-libc-dev. Anyways, maybe you can list your packages with
rpm -qa | grep kernel
and see if you have something like it
On 01/30/2013 04:31 PM, Mark Kremenetsky wrote:
I have to apologize for not providing OS version that I am running on my system It is SUSE Linux Enterprise Server 11 (x86_64) VERSION = 11 PATCHLEVEL = 2 Mark
On 01/30/2013 01:21 PM, Nathan Goldbaum wrote:
And in fact, on Ubuntu the install script will spit out exactly which packages it needs:
https://bitbucket.org/yt_analysis/yt/src/0514b030f6479c0adb75df5bf3da7ab7310...
It would help to figure out exactly which libraries and packages are needed if you're running a different distribution or a different flavor of UNIX.
If this is a shared computer or cluster and you don't have root access it should be possible to get this working but it will probably be a bit more complicated.
Cheers,
Nathan
On Jan 30, 2013, at 1:04 PM, Peter Teuben <teuben@astro.umd.edu> wrote:
On 01/30/2013 03:59 PM, Mark Kremenetsky wrote:
Guys,
I am using a script recommended on ENZO boot-camp page
$ bash install_script.sh
in order to set up all libraries needed for enzo compilation.
Everything is going good and well until I got a following error:
gcc -fPIC -c bzip2.c
In file included from /usr/include/errno.h:36,
from bzip2.c:55:
/usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or
directory
make: *** [bzip2.o] Error 1
I checked and certainly I don't have such thing as
/usr/include/linux/errno.h
Any advice ?
on ubuntu you can do
% dpkg -S /usr/include/linux/errno.h linux-libc-dev: /usr/include/linux/errno.h
so you need to have that "dev" package installed. For other distro's it might have a different name. If this is your first time installing it, you might wind up needing more of these development packages for some of the libraries.
I've seen quite a few packages give their developers a nice list of how to update their system, something like
sudo apt-get install linux-libc-dev .....
peter
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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participants (4)
-
Mark Kremenetsky -
Matthew Turk -
Nathan Goldbaum -
Peter Teuben