[Neuroimaging] Electrophysiology software in python?

[Alexandre Gramfort]

hi,

wrt GUIs if you have a Raw object in mne-python you can just do:

raw.plot()

you'll have a interactive data browser that you can use for QC and scoring.
You cannot however currently manually annotate the data.

HTH
Alex



On Mon, Sep 14, 2015 at 9:48 PM, Nate Vack <njvack at wisc.edu> wrote:
> It's pretty close -- at least, it has the numerical methods we're looking
> for. The big thing we're missing, though, is a GUI for QC and scoring.
>
> Thanks!
> -n
>
> On Mon, Sep 14, 2015 at 2:18 PM Michael Waskom <mwaskom at stanford.edu> wrote:
>>
>> Hi Nate:
>>
>> I think nitime might have much of what you are looking for?
>> http://nipy.org/nitime/
>>
>> Best,
>> Michael
>>
>> On Mon, Sep 14, 2015 at 12:06 PM, Nate Vack <njvack at wisc.edu> wrote:
>>>
>>> Hi all,
>>>
>>> Sorry if this is OT, but maybe it isn't? Anyhow: I'm looking around to
>>> see if there's a decent Python package for the scoring, processing, and
>>> analysis of electrophysiology (EDA, EMG, respiration, etc) data in python.
>>> There's PyMNE, but it looks like that's fairly specifically geared towards
>>> EEG/EMG -- is there anything that's more oriented in the "small number of
>>> channels that aren't necessarily EEG-like" direction?
>>>
>>> There's a part of my brain that feels like it's seen something like this
>>> before, but my Google-fu is proving too weak.
>>>
>>> Thanks,
>>> -Nate
>>>
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