[Neuroimaging] nibabel: probelm reading a nii.gz

Matthew Brett matthew.brett at gmail.com
Sat Jul 22 18:16:24 EDT 2017


Can you put the image somewhere where we/I can get it?



On 22 Jul 2017 18:31, "Gabriel Reynés" <greynell at gmail.com> wrote:


I have some troubles reading a nii.gz with nibabel. I get the error:
"nibabel.filebasedimages.ImageFileError: Cannot work out file type of"

So far I tried to unzip the file to a nii, but I did not achieve anything.
The image is not corrupt as I can see it using ImageJ.
It only contains a mask, so maybe is lacking some field nibabel is
searching for? I just need the mask to post-process the image, so I don't
need any other field.

Any idea how to solve this problem?

Thank you for your time,


Neuroimaging mailing list
Neuroimaging at python.org
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.python.org/pipermail/neuroimaging/attachments/20170722/f64b6455/attachment.html>

More information about the Neuroimaging mailing list