[Neuroimaging] flipping left-right side of images
Christophe Pallier
christophe at pallier.org
Wed Jan 22 10:09:25 EST 2020
Dear all ,
I am trying to flip maks images which are in MNI space.
I have tried the naive approach of flipping the data array in voxel
space, but the results is not satisfactory (the result is not
symmetrical to the original)
---
from numpy import flip
img = nib.load('mask.nii')
data = img.get_data()
nib.save(nib.Nifti1Image(np.flip(data, axis=0), affine=img.affine), 'test.nii')
---
I also tried to hack the affine matrix, switching the sign of the
first element, and using nilearn.image.resample_img, to create a new
image, but with bad result.
Any suggestion?
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