[Neuroimaging] Discourse category for DICOM discussions

[Steve Pieper]

Looks like some really great ideas and resources are coming together.  I'm
really glad to see you funded for this.

Folks may also be interested in highdicom:
https://github.com/MGHComputationalPathology/highdicom

It addresses objects like reports, parametric maps and segmentations that
could really be useful for neuroimaging.

We also have a lot of multimodality python dicom parsing code in Slicer
that would be nice to factor out.

Best,
Steve



On Sat, Jul 10, 2021 at 12:10 PM Matthew Brett <matthew.brett at gmail.com>
wrote:

> Hi Steve,
>
> Some sparse notes here:
>
>
> https://docs.google.com/document/d/1Ca999GAx1qfCT0Hw5JRlJSEJeVTRDYaIg1h1LWbgYoo/edit?usp=sharing
>
> The next plan was to have a show-and-tell session where we go over the
> main parts of the various Python libraries covering DICOM in
> neuroimaging, which we so far have as:
>
> dicom_parser
> dcmstack
> Nibabel/nicom
>
> All welcome, as usual; any other suggestions welcome.  We haven't got
> a time yet - I think Zvi had kindly agreed to poll and set that up
> next week.
>
> Cheers,
>
> Matthew
>
> On Sat, Jul 10, 2021 at 5:06 PM Steve Pieper <pieper at isomics.com> wrote:
> >
> > Hi Mathew and Satra -
> >
> > I'm sorry I couldn't attend the meeting yesterday, but I look forward to
> this further discussion.  Are there any notes from the meeting?
> >
> > Best,
> > Steve
> >
> > On Sat, Jul 10, 2021 at 11:54 AM Matthew Brett <matthew.brett at gmail.com>
> wrote:
> >>
> >> Hi,
> >>
> >> Ah - sorry - I didn't realize Neurostars was a Discourse instance - I
> >> hadn't looked for ages.  No, no reason, let's move there.  How do I
> >> create a new category?  Is there a system for collecting / archiving
> >> the post data so that we can replicate it if there's a problem?
> >>
> >> Cheers,
> >>
> >> Matthew
> >>
> >>
> >>
> >> On Sat, Jul 10, 2021 at 4:15 PM Satrajit Ghosh <satra at mit.edu> wrote:
> >> >
> >> > hi matthew,
> >> >
> >> > any reason not to use neurostars for this (which is a discourse
> platform)? a number of neuroimaging software discussions are already
> happening there, including questions about nibabel and dicom conversion
> tools.
> >> >
> >> > cheers,
> >> >
> >> > satra
> >> >
> >> > On Sat, Jul 10, 2021 at 10:43 AM Matthew Brett <
> matthew.brett at gmail.com> wrote:
> >> >>
> >> >> Hi,
> >> >>
> >> >> We had a good discussion yesterday about what to do next with Python
> and DICOM.
> >> >>
> >> >> To keep the discussion going, while not overloading your inboxes,
> I've
> >> >> asked Discourse for a Nipy Discourse instance, and I've made a
> >> >> category for the DICOM discussions, here:
> >> >>
> >> >> https://nipy.discourse.group/c/python-dicom
> >> >>
> >> >> Can I suggest that we move the DICOM discussions to that category?
> >> >> Then we can feed back here, from time to time.
> >> >>
> >> >> The Discourse category is all public, so you can always go and see
> >> >> what we are up to by following the link.  For those new to Discourse,
> >> >> it's a rather nice Forum-like system that has good email integration,
> >> >> and Markdown editing, so it's a nice way of making well-formed,
> >> >> publicly searchable messages and discussions, that you can use via
> >> >> email if you want.
> >> >>
> >> >> If anyone wants new categories or admin permissions on the Discourse
> >> >> instance, just let me know.
> >> >>
> >> >> Cheers,
> >> >>
> >> >> Matthew
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