Hi everyone,
I'm a bit lost when trying to use the livedocs with the latest cvs
build.
1.) The building process seems to ignore my atlas packages and uses
only
lapack. This is the error I get:
/scratch/hlubek/cvs/scipy/scipy_core/scipy_distutils/
system_info.py:653:
UserWarning:
*********************************************************************
Could not find lapack library within the ATLAS installation.
*********************************************************************
warnings.warn(message)
/scratch/hlubek/cvs/scipy/scipy_core/scipy_distutils/
system_info.py:865:
FutureWarning: hex()/oct() of negative int will return a signed string
in
Python 2.4 and up
magic = hex(hash(`config`))
I'm using debian sarge with the atlas2-sse2 packages but atlas3-sse2
is also installed due to some python-2.3 dependencies.
The output of system_info.py can be found below.
2.) When using the livedocs I don't get all of the help files.
I.e. scipy.xplt.histogram is displaying an empty help string in the
livedocs,
although running
>> ??scipy.xplt.histogram
from ipython clearly shows that it is available.
scipy.xplt.legend isn't even available in the livedocs, as are
many other methods and all of the source files.
Could these two issues be related? Or has anyone another idea what I am
doing wrong?
Thanks for your help,
Nikolai
_pkg_config_info:
NOT AVAILABLE
agg2_info:
( src_dirs = .:/usr/local/src )
NOT AVAILABLE
atlas_blas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/atlas,/usr/lib/sse2 )
( paths: /usr/lib/sse2/libf77blas.so )
( paths: /usr/lib/sse2/libcblas.so )
( paths: /usr/lib/sse2/libatlas.so )
( include_dirs = /usr/local/include:/usr/include )
( paths: /usr/include/atlas_misc.h,/usr/include/atlas_enum.h,/usr/
include/atlas_aux.h,/usr/include/atlas_type.h
)
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/atlas,/usr/lib/sse2 )
FOUND:
libraries = ['f77blas', 'cblas', 'atlas']
library_dirs = ['/usr/lib/sse2']
language = c
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/atlas,/usr/lib/sse2 )
( paths: /usr/lib/sse2/libatlas.so )
( paths: /usr/lib/sse2/libatlas.a )
NOT AVAILABLE
atlas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/atlas,/usr/lib/sse2 )
( paths: /usr/lib/sse2/libf77blas.so )
( paths: /usr/lib/sse2/libcblas.so )
( paths: /usr/lib/sse2/libatlas.so )
( paths: /usr/lib/sse2/liblapack_atlas.so )
system_info.atlas_info
( include_dirs = /usr/local/include:/usr/include )
( paths: /usr/include/atlas_misc.h,/usr/include/atlas_enum.h,/usr/
include/atlas_aux.h,/usr/include/atlas_type.h
)
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/atlas,/usr/lib/sse2 )
FOUND:
libraries = ['f77blas', 'cblas', 'atlas']
library_dirs = ['/usr/lib/sse2']
language = c
define_macros = [('ATLAS_WITHOUT_LAPACK', None)]
atlas_threads_info:
Setting PTATLAS=ATLAS
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/atlas,/usr/lib/sse2 )
( paths: /usr/lib/sse2/libatlas.so )
( paths: /usr/lib/sse2/libatlas.a )
( paths: /usr/lib/sse2/liblapack_atlas.so )
system_info.atlas_threads_info
NOT AVAILABLE
blas_info:
( library_dirs = /usr/local/lib:/usr/lib )
NOT AVAILABLE
blas_opt_info:
running build_src
building extension "atlas_version" sources
creating build
creating build/src
adding 'build/src/atlas_version_0xaa8955e5.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'atlas_version' extension
compiling C sources
gcc options: '-pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall
-Wstrict-prototypes -fPIC'
creating build/temp.linux-i686-2.3
creating build/temp.linux-i686-2.3/build
creating build/temp.linux-i686-2.3/build/src
compile options: '-I/usr/include/python2.3 -c'
gcc: build/src/atlas_version_0xaa8955e5.c
gcc -pthread -shared build/temp.linux-i686-2.3/build/src/
atlas_version_0xaa8955e5.o
-L/usr/lib/sse2 -lf77blas -lcblas -latlas -o
build/temp.linux-i686-2.3/atlas_version.so
Command: /usr/bin/python -c "import imp;imp.load_dynamic
(\"atlas_version\",\"atlas_version.so\")"
Status: 1
Output: Traceback (most recent call last):
File "<string>", line 1, in ?
ImportError: /usr/lib/sse2/libf77blas.so.2: undefined symbol: e_wsfe
( library_dirs = /usr/local/lib:/usr/lib )
FOUND:
libraries = ['f77blas', 'cblas', 'atlas']
library_dirs = ['/usr/lib/sse2']
language = c
define_macros = [('NO_ATLAS_INFO', 2)]
blas_src_info:
( src_dirs = .:/usr/local/src )
NOT AVAILABLE
boost_python_info:
( src_dirs = .:/usr/local/src )
NOT AVAILABLE
dfftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
dfftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
djbfft_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
fftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
( paths: /usr/lib/librfftw.so )
( paths: /usr/lib/libfftw.so )
( paths: /usr/include/fftw.h,/usr/include/rfftw.h )
( library_dirs = /usr/local/lib:/usr/lib )
FOUND:
libraries = ['rfftw', 'fftw']
library_dirs = ['/usr/lib']
define_macros = [('SCIPY_FFTW_H', None)]
include_dirs = ['/usr/include']
fftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
( paths: /usr/lib/librfftw_threads.so )
( paths: /usr/lib/libfftw_threads.so )
( paths: /usr/include/fftw_threads.h,/usr/include/rfftw_threads.h )
( library_dirs = /usr/local/lib:/usr/lib )
FOUND:
libraries = ['rfftw_threads', 'fftw_threads']
library_dirs = ['/usr/lib']
define_macros = [('SCIPY_FFTW_THREADS_H', None)]
include_dirs = ['/usr/include']
freetype2_info:
NOT AVAILABLE
gdk_2_info:
NOT AVAILABLE
gdk_info:
NOT AVAILABLE
gdk_pixbuf_2_info:
NOT AVAILABLE
gdk_pixbuf_xlib_2_info:
NOT AVAILABLE
gdk_x11_2_info:
NOT AVAILABLE
gtkp_2_info:
NOT AVAILABLE
gtkp_x11_2_info:
NOT AVAILABLE
lapack_atlas_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/atlas,/usr/lib/sse2 )
( paths: /usr/lib/sse2/liblapack_atlas.so )
( paths: /usr/lib/sse2/libf77blas.so )
( paths: /usr/lib/sse2/libcblas.so )
( paths: /usr/lib/sse2/libatlas.so )
( paths: /usr/lib/sse2/liblapack_atlas.so )
system_info.lapack_atlas_info
( include_dirs = /usr/local/include:/usr/include )
( paths: /usr/include/atlas_misc.h,/usr/include/atlas_enum.h,/usr/
include/atlas_aux.h,/usr/include/atlas_type.h
)
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/atlas,/usr/lib/sse2 )
FOUND:
libraries = ['lapack_atlas', 'f77blas', 'cblas', 'atlas']
library_dirs = ['/usr/lib/sse2']
language = c
define_macros = [('ATLAS_WITH_LAPACK_ATLAS', None)]
lapack_atlas_threads_info:
Setting PTATLAS=ATLAS
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/atlas,/usr/lib/sse2 )
( paths: /usr/lib/sse2/liblapack_atlas.so )
( paths: /usr/lib/sse2/libatlas.so )
( paths: /usr/lib/sse2/liblapack_atlas.a )
( paths: /usr/lib/sse2/libatlas.a )
( paths: /usr/lib/sse2/liblapack_atlas.so )
system_info.lapack_atlas_threads_info
NOT AVAILABLE
lapack_info:
( library_dirs = /usr/local/lib:/usr/lib )
( paths: /usr/lib/liblapack.a )
( library_dirs = /usr/local/lib:/usr/lib )
FOUND:
libraries = ['lapack']
library_dirs = ['/usr/lib']
language = f77
lapack_opt_info:
running build_src
building extension "atlas_version" sources
adding 'build/src/atlas_version_0x31b82f3b.c' to sources.
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
Command: /usr/bin/python -c "import imp;imp.load_dynamic
(\"atlas_version\",\"atlas_version.so\")"
Status: 1
Output: Traceback (most recent call last):
File "<string>", line 1, in ?
ImportError: /usr/lib/sse2/libf77blas.so.2: undefined symbol: e_wsfe
( library_dirs = /usr/local/lib:/usr/lib )
FOUND:
libraries = ['f77blas', 'cblas', 'atlas', 'lapack']
library_dirs = ['/usr/lib/sse2', '/usr/lib']
define_macros = [('ATLAS_WITHOUT_LAPACK', None), ('NO_ATLAS_INFO',
2)]
language = f77
lapack_src_info:
( src_dirs = .:/usr/local/src )
NOT AVAILABLE
numarray_info:
( include_dirs = /usr/include/python2.3 )
( paths: /usr/include/python2.3/numarray/arrayobject.h )
( library_dirs = )
FOUND:
define_macros = [('NUMARRAY_VERSION', '"\\"1.1.1\\""')]
include_dirs = ['/usr/include/python2.3']
numpy_info:
( include_dirs = /usr/include/python2.3 )
( paths: /usr/include/python2.3/Numeric/arrayobject.h )
( library_dirs = )
FOUND:
define_macros = [('NUMERIC_VERSION', '"\\"23.7\\""')]
include_dirs = ['/usr/include/python2.3']
sfftw_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
sfftw_threads_info:
( library_dirs = /usr/local/lib:/usr/lib )
( include_dirs = /usr/local/include:/usr/include )
NOT AVAILABLE
wx_info:
Could not locate executable wx-config
File not found: wx-config. Cannot determine wx info.
NOT AVAILABLE
x11_info:
( library_dirs = /usr/X11R6/lib:/usr/lib )
( include_dirs = /usr/X11R6/include:/usr/include )
( paths: /usr/X11R6/lib/libX11.so )
( paths: /usr/X11R6/include/X11/X.h )
( library_dirs = /usr/X11R6/lib:/usr/lib )
FOUND:
libraries = ['X11']
library_dirs = ['/usr/X11R6/lib']
include_dirs = ['/usr/X11R6/include']
xft_info:
NOT AVAILABLE