Mailman 3 November 2007 - SciPy-User

Help required regding Eigenvectors
by Sudheer Phani 14 Mar '22

14 Mar '22

Hello All, I have been encountering some strange problems with the calculation of eigen vectors using python. The problem is with the sign of the eigen vectors calculated. On Very few occasions the eigen vectors calculated using python have an opposite sign than the actual eigenvectors, though the magnitude is correct. Can any one of you plz help me in this regard and suggest me some solution if you have encoutered similar problems . Any help in this regd is appreciated Thanks in Advace regds Sudheer

5 5

3D plotting
by Robert Cimrman 10 Sep '09

10 Sep '09

Hi, I need to do some simple 3D plots, so I tried the two Cookbook recipes (xplt, mplot3d) and failed: * xplt: does not work when using a custom installation directory such as python setup.py install --root=/home/share/software apparently the gistdata directory path is wrong: gist.error: failed to create drawing -- Gist work.gs style sheet missing * mplot3d: does not work with my version of matplotlib (0.80). I have made the changes mentioned in the Cookbook to no avail. (Axes.__init__() args apparently changed, as well as some other matplotlib object attributes) Any ideas? mplot3d looks great, I would really like to use it! thanks, r.

6 6

Is numpy's argsort lying about its numpy.int32 types?
by Rob Clewley 15 May '09

15 May '09

Hi, I'm having a problem comparing some types when using numpy's argsort. I'm using numpy 1.0.2. I can reproduce it simply: Python 2.4.4 (#71, Oct 18 2006, 08:34:43) [MSC v.1310 32 bit (Intel)] << snip >> In [1]: from numpy import argsort, sort, int32, array In [2]: x=array([1,3,2]) In [3]: aa=argsort(x) In [4]: as=sort(x) In [5]: type(aa[0]) Out[5]: <type 'numpy.int32'> In [6]: type(as[0]) Out[6]: <type 'numpy.int32'> In [7]: int32 Out[7]: <type 'numpy.int32'> In [8]: type(as[0])==int32 Out[8]: True In [9]: type(aa[0])==int32 Out[9]: False Any of the three indices in aa give me the same problem. Can someone explain if I should be doing this a different way, and if this is a bug?! Thanks, Rob

5 6

Installing Scipy
by David Arnold 10 Apr '08

10 Apr '08

All, Mac OS X 10.4.11 PPC. Installed python from this: http://www.python.org/ftp/python/2.5.1/python-2.5.1-macosx.dmg Installation finishes with "There were errors installing the software. Please try installing again." Installing again makes no difference, but Python appears to be running: scipy-0.6.0 $ python Python 2.5.1 (r251:54869, Apr 18 2007, 22:08:04) [GCC 4.0.1 (Apple Computer, Inc. build 5367)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>> Downloaded scipy from: http://prdownloads.sourceforge.net/scipy/ scipy-0.6.0.tar.gz?download After unpacking and changing directories, simply did this: scipy-0.6.0 $ sudo python setup.py install Seem to finish OK. Lots of "Warnings.' But testing according to INSTALL.txt resulted in: scipy-0.6.0 $ python Python 2.5.1 (r251:54869, Apr 18 2007, 22:08:04) [GCC 4.0.1 (Apple Computer, Inc. build 5367)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>> import scipy Traceback (most recent call last): File "<stdin>", line 1, in <module> File "scipy/__init__.py", line 54, in <module> from __config__ import show as show_config ImportError: No module named __config__ Any ideas or advice? Thanks David.

4 3

Bundling numpy/scipy with applications
by Michael Hearne 29 Dec '07

29 Dec '07

I'm creating a Python application that is internal to my organization, but will be installed on both Linux and Mac OS X machines. The application depends heavily on a number of "non-pure" modules (those that have C/C++/FORTRAN components), like numpy, scipy, gdal, etc. What is the most "pythonic" way to bundle these types of modules inside my application? I've investigated dist_utils and setuptools, and I don't see an easy way with those tools to include build instructions for packages built with autconf tools. Is my only recourse to write a custom install script that calls the "configure;make;make install" from a shell? --Mike ------------------------------------------------------ Michael Hearne mhearne(a)usgs.gov (303) 273-8620 USGS National Earthquake Information Center 1711 Illinois St. Golden CO 80401 Senior Software Engineer Synergetics, Inc. ------------------------------------------------------

5 7

sparse matrix dtype
by Robin 17 Dec '07

17 Dec '07

Hi, I am trying to make a large sparse matrix - the values are all integers (in fact all non-zeros will be 1) so it would save me a lot of memory if I could use dtype=byte. However: In [23]: test=sparse.lil_matrix((10,10),dtype=byte) In [24]: test.dtype Out[24]: dtype('float64') Is this correct or is there something up here? Thanks Robin

3 3

scipy.sparse problem
by Donald Fredkin 17 Dec '07

17 Dec '07

I am unable to import the scipy.sparse module. When I try, here is what happens: C:\Documents and Settings\drf\My Documents>python Python 2.5.1 (r251:54863, Apr 18 2007, 08:51:08) [MSC v.1310 32 bit (Intel)] on win32 Type "help", "copyright", "credits" or "license" for more information. >>> import scipy >>> import scipy.sparse Traceback (most recent call last): File "<stdin>", line 1, in <module> File "C:\Python25\Lib\site-packages\scipy\sparse\__init__.py", line 5, in <module> from sparse import * File "C:\Python25\lib\site-packages\scipy\sparse\sparse.py", line 21, in <module> from scipy.sparse.sparsetools import cscmux, csrmux, \ ImportError: cannot import name cscmux >>> print scipy.__version__ 0.6.0 >>> Can anyone tell me how to fix this? It was OK with an earlier version of scipy. This is, by the way, on Windows XP. Thanks, Don -- Donald R. Fredkin drfredkin(a)ucsd.edu

2 1

scipy 0.6.0 ImportError: cannot import name cscmux
by youngsu park 17 Dec '07

17 Dec '07

Hi. Im Youngsu-park ,in POSTECH in south korea. I had same problem on scipy importing like: from scipy import * . So I looked at the scipy/sparse folder, "C:\Python25\Lib\site-packages\scipy\sparse". To find the reason of error, I open the "C:\Python25\Lib\site-packages\scipy\sparse\sparse.py", file. >From line 21 to 26, there was import statement for "sparsetools" from scipy.sparse.sparsetools import cscmux, csrmux, \ cootocsr, csrtocoo, cootocsc, csctocoo, csctocsr, csrtocsc, \ densetocsr, csrtodense, \ csrmucsr, cscmucsc, \ csr_plus_csr, csc_plus_csc, csr_minus_csr, csc_minus_csc, \ csr_elmul_csr, csc_elmul_csc, csr_eldiv_csr, csc_eldiv_csc I change the working directory to "C:\Python25\Lib\site-packages\scipy\sparse", import sparestools and use dir function to see the members of sparsetools In [16]: import sparsetoo In [17]: dir(sparsetools) Out[17]: ['__doc__', '__file__', '__name__', '__version__', 'ccootocsc', 'ccscadd', 'ccscextract', 'ccscgetel', 'ccscmucsc', 'ccscmucsr', 'ccscmul', 'ccscmux', 'ccscsetel', 'ccsctocoo', 'ccsctofull', 'ccsrmucsc', 'ccsrmux', 'cdiatocsc', 'cfulltocsc', 'ctransp', 'dcootocsc', 'dcscadd', 'dcscextract', 'dcscgetel', 'dcscmucsc', 'dcscmucsr', 'dcscmul', 'dcscmux', 'dcscsetel', 'dcsctocoo', 'dcsctofull', 'dcsrmucsc', 'dcsrmux', 'ddiatocsc', 'dfulltocsc', 'dtransp', 'scootocsc', 'scscadd', 'scscextract', 'scscgetel', 'scscmucsc', 'scscmucsr', 'scscmul', 'scscmux', 'scscsetel', 'scsctocoo', 'scsctofull', 'scsrmucsc', 'scsrmux', 'sdiatocsc', 'sfulltocsc', 'stransp', 'zcootocsc', 'zcscadd', 'zcscextract', 'zcscgetel', 'zcscmucsc', 'zcscmucsr', 'zcscmul', 'zcscmux', 'zcscsetel', 'zcsctocoo', 'zcsctofull', 'zcsrmucsc', 'zcsrmux', 'zdiatocsc', 'zfulltocsc', 'ztransp'] But it is not the members of sparsetools.py I think it is the members of sparsetools.pyd. Move sparsetools.pyd to some backup directory. Then it will works well. In [21]: from scipy import * In [22]:

5 7

time series analysis
by Timmie 11 Dec '07

11 Dec '07

Dear list members, I am looking for some hints and recommendations. I want to use python to analyse and evaluate (measurement) time series. Therefore I am looking for some modules and documentation or tutorials which could help me in * filtering time series for a cetain criteria * reduce them to a lower time resolution: e.g. from houly values to daily mean values * filling data gaps for days or hours without valid data using statistical methods like regression * general data quality and trend assessment I found a conversion of the |Stat ("pipe-stat") programs written by Gary Perlman into a python module: pstat.py - http://www.nmr.mgh.harvard.edu/Neural_Systems_Group/gary/python/pstat.py This can be used as a start. But I am interested in what you could recommend. Thanks. Kind regards, Timmie

9 16

Problems installing scipy 0.6 on FC5
by Alexander Dietz 06 Dec '07

06 Dec '07

Hi, I am running FC5 (I think, how to figure out) and I followed the installation instructions for FC5. The last step, however, fails with the following error messages: > python setup.py install ... ... g77:f77: scipy/fftpack/dfftpack/zfftb.f g77:f77: scipy/fftpack/dfftpack/dsinti.f g77:f77: scipy/fftpack/dfftpack/dfftb.f g77:f77: scipy/fftpack/dfftpack/zfftb1.f /tmp/ccuB5p4W.s: Assembler messages: /tmp/ccuB5p4W.s:589: Error: suffix or operands invalid for `movd' /tmp/ccuB5p4W.s:2948: Error: suffix or operands invalid for `movd' /tmp/ccuB5p4W.s: Assembler messages: /tmp/ccuB5p4W.s:589: Error: suffix or operands invalid for `movd' /tmp/ccuB5p4W.s:2948: Error: suffix or operands invalid for `movd' error: Command "/usr/bin/g77 -g -Wall -fno-second-underscore -fPIC -O2 -funroll-loops -march=i686 -mmmx -msse2 -msse -fomit-frame-pointer -malign-double -c -c scipy/fftpack/dfftpack/zfftb1.f -o build/temp.linux- i686-2.4/scipy/fftpack/dfftpack/zfftb1.o" failed with exit status 1 Any ideas how to solve this issue? Cheers Alex

2 7