[Neuroimaging] Neuroimaging Digest, Vol 13, Issue 5

[Vivek Joshi]

Hello 
Can you tell me the steps to install dipy from a release.
Steps to install modules like pywavelets nibabel and modules for adaptive denoising.
Thank you 

-----Original Message-----
From: "neuroimaging-request at python.org" <neuroimaging-request at python.org>
Sent: ‎05-‎06-‎2016 21:33
To: "neuroimaging at python.org" <neuroimaging at python.org>
Subject: Neuroimaging Digest, Vol 13, Issue 5

Send Neuroimaging mailing list submissions to
	neuroimaging at python.org

To subscribe or unsubscribe via the World Wide Web, visit
	https://mail.python.org/mailman/listinfo/neuroimaging
or, via email, send a message with subject or body 'help' to
	neuroimaging-request at python.org

You can reach the person managing the list at
	neuroimaging-owner at python.org

When replying, please edit your Subject line so it is more specific
than "Re: Contents of Neuroimaging digest..."


Today's Topics:

   1. errors installing other modules in dipy (Vivek Joshi)
   2. Re: errors installing other modules in dipy (Ariel Rokem)


----------------------------------------------------------------------

Message: 1
Date: Sun, 5 Jun 2016 16:00:07 +0530
From: Vivek Joshi <vivekjoshi1894 at gmail.com>
To: neuroimaging at python.org
Subject: [Neuroimaging] errors installing other modules in dipy
Message-ID:
	<CAMYkJfux-HKFhaf1aiCd9SZaE8+dHsTrwXr3ZRmyULw4=b=Eeg at mail.gmail.com>
Content-Type: text/plain; charset="utf-8"

hello
I ve installed dipy using the instructions given in the dipy website. But
when trying to install other modules my setup.py got overwritten. Now i m
getting errors trying to fetch sherbrooke_3shell dataset.
Also i want to denoise the dataset using wavelet denoising. For that i need
to install other modules. How to do that?
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.python.org/pipermail/neuroimaging/attachments/20160605/66246150/attachment-0001.html>

------------------------------

Message: 2
Date: Sun, 5 Jun 2016 08:51:50 -0700
From: Ariel Rokem <arokem at gmail.com>
To: Neuroimaging analysis in Python <neuroimaging at python.org>
Subject: Re: [Neuroimaging] errors installing other modules in dipy
Message-ID:
	<CA+X4w0yQh7aVkXUV3BurMk-zM9cqk1JR78_GRh=eubC0RD6SHg at mail.gmail.com>
Content-Type: text/plain; charset="utf-8"

Hi Vivek,

On Sun, Jun 5, 2016 at 3:30 AM, Vivek Joshi <vivekjoshi1894 at gmail.com>
wrote:

> hello
> I ve installed dipy using the instructions given in the dipy website. But
> when trying to install other modules my setup.py got overwritten. Now i m
> getting errors trying to fetch sherbrooke_3shell dataset.
>

I am not exactly sure what you mean. Could you tell me exactly what you did
(step by step)? Which instructions did you follow? The ones to install from
the source code (
http://nipy.org/dipy/installation.html#installing-from-source)? Or for
installing a released version (I think that would be better in this case:
http://nipy.org/dipy/installation.html#installing-a-release)?


> Also i want to denoise the dataset using wavelet denoising. For that i
> need to install other modules. How to do that?
>

Again - I am not exactly sure what you mean. Do you mean that you want to
install other libraries (e.g., pywavelets
<http://www.pybytes.com/pywavelets/>)? You should be able to do that in
parallel to your Dipy installation.

Cheers,

Ariel



> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.python.org/pipermail/neuroimaging/attachments/20160605/3e4236d7/attachment-0001.html>

------------------------------

Subject: Digest Footer

_______________________________________________
Neuroimaging mailing list
Neuroimaging at python.org
https://mail.python.org/mailman/listinfo/neuroimaging


------------------------------

End of Neuroimaging Digest, Vol 13, Issue 5
*******************************************
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.python.org/pipermail/neuroimaging/attachments/20160605/368ea0dd/attachment.html>