Mailman 3 June 2015 - scikit-image

Re: Sticker review
by Stefan van der Walt 09 Jun '15

09 Jun '15

Here is the no-holes version: https://www.dropbox.com/s/yn7p3p1dfs1itc5/sticker_01.png?dl=0 One reason to keep the hole would be to distinguish the two parts: scikit vs image. On 2015-06-08 21:34:50, Juan Nunez-Iglesias <jni.soma(a)gmail.com> wrote: > @stefanv, I'd favour closing the k-i also. > > On Tue, Jun 9, 2015 at 12:51 PM, Michael Sarahan > <msarahan(a)gmail.com> wrote: > >> I agree that the open g looks weird. Good work closing >> it. Funny how the triangle between the k and i does not look >> weird to me. I think it's great as is. >> >> On Mon, Jun 8, 2015, 19:26 Stefan van der Walt >> <stefanv(a)berkeley.edu> >> wrote: >> >>> On 2015-06-07 09:35:32, Michael Sarahan <msarahan(a)gmail.com> >>> wrote: >>> > Looks great! I'm excited to put one on my laptop. My only >>> > comment/question is about the grey space between the k and >>> > i. I think it's fine as is, but I wonder why you have >>> > grey/cutout there, and not in any of the other large void >>> > spaces (like inside the g?) Disclaimer: I have never >>> > designed a sticker, and don't know best practices. Among >>> > the stickers that I presently have on my laptop, none have >>> > cutouts inside the sticker. >>> >>> I manually closed the hole inside the g, because someone told >>> me it looked weird. Perhaps it looks even weirder now that >>> it's artificially closed? >>> >>> Here is the original: >>> >>> https://www.dropbox.com/s/yg4lypzmgjd1aoh/sticker_00.png?dl=0 >>> >>> Stéfan >>> >>> -- You received this message because you are subscribed to the >>> Google Groups "scikit-image" group. To unsubscribe from this >>> group and stop receiving emails from it, send an email to >>> scikit-image+unsubscribe(a)googlegroups.com. For more options, >>> visit https://groups.google.com/d/optout. >>> >> -- >> You received this message because you are subscribed to the >> Google Groups "scikit-image" group. To unsubscribe from this >> group and stop receiving emails from it, send an email to >> scikit-image+unsubscribe(a)googlegroups.com. For more options, >> visit https://groups.google.com/d/optout. >>

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Re: Sticker review
by Juan Nunez-Iglesias 09 Jun '15

09 Jun '15

@stefanv, I'd favour closing the k-i also. On Tue, Jun 9, 2015 at 12:51 PM, Michael Sarahan <msarahan(a)gmail.com> wrote: > I agree that the open g looks weird. Good work closing it. Funny how the > triangle between the k and i does not look weird to me. I think it's great > as is. > > On Mon, Jun 8, 2015, 19:26 Stefan van der Walt <stefanv(a)berkeley.edu> > wrote: > >> On 2015-06-07 09:35:32, Michael Sarahan <msarahan(a)gmail.com> >> wrote: >> > Looks great! I'm excited to put one on my laptop. My only >> > comment/question is about the grey space between the k and i. I >> > think it's fine as is, but I wonder why you have grey/cutout >> > there, and not in any of the other large void spaces (like >> > inside the g?) Disclaimer: I have never designed a sticker, and >> > don't know best practices. Among the stickers that I presently >> > have on my laptop, none have cutouts inside the sticker. >> >> I manually closed the hole inside the g, because someone told me >> it looked weird. Perhaps it looks even weirder now that it's >> artificially closed? >> >> Here is the original: >> >> https://www.dropbox.com/s/yg4lypzmgjd1aoh/sticker_00.png?dl=0 >> >> Stéfan >> >> -- >> You received this message because you are subscribed to the Google Groups >> "scikit-image" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to scikit-image+unsubscribe(a)googlegroups.com. >> For more options, visit https://groups.google.com/d/optout. >> > -- > You received this message because you are subscribed to the Google Groups > "scikit-image" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to scikit-image+unsubscribe(a)googlegroups.com. > For more options, visit https://groups.google.com/d/optout. >

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Re: Sticker review
by Stefan van der Walt 09 Jun '15

09 Jun '15

On 2015-06-07 09:35:32, Michael Sarahan <msarahan(a)gmail.com> wrote: > Looks great! I'm excited to put one on my laptop. My only > comment/question is about the grey space between the k and i. I > think it's fine as is, but I wonder why you have grey/cutout > there, and not in any of the other large void spaces (like > inside the g?) Disclaimer: I have never designed a sticker, and > don't know best practices. Among the stickers that I presently > have on my laptop, none have cutouts inside the sticker. I manually closed the hole inside the g, because someone told me it looked weird. Perhaps it looks even weirder now that it's artificially closed? Here is the original: https://www.dropbox.com/s/yg4lypzmgjd1aoh/sticker_00.png?dl=0 Stéfan

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Re: Sticker review
by Stefan van der Walt 09 Jun '15

09 Jun '15

Hi Johannes On 2015-06-07 07:49:44, Johannes Schönberger <jsch(a)demuc.de> wrote: > Looks nice! How does it look like with a warying white border? Varying in which aspect? Stéfan

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Re: Sticker review
by Michael Sarahan 07 Jun '15

07 Jun '15

Looks great! I'm excited to put one on my laptop. My only comment/question is about the grey space between the k and i. I think it's fine as is, but I wonder why you have grey/cutout there, and not in any of the other large void spaces (like inside the g?) Disclaimer: I have never designed a sticker, and don't know best practices. Among the stickers that I presently have on my laptop, none have cutouts inside the sticker. Best, Michael On Sun, Jun 7, 2015 at 7:49 AM Johannes Schönberger <jsch(a)demuc.de> wrote: > Looks nice! How does it look like with a warying white border? > > On Sun, Jun 7, 2015 at 7:34 AM, Stefan van der Walt > <stefanv(a)berkeley.edu> wrote: > > Hi all, > > > > Here is a PR with a potential skimage sticker: > > > > https://github.com/scikit-image/skimage-branding/pull/1 > > > > What do you think? > > > > Stéfan > > > > -- > > You received this message because you are subscribed to the Google Groups > > "scikit-image" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to scikit-image+unsubscribe(a)googlegroups.com. > > For more options, visit https://groups.google.com/d/optout. > > -- > You received this message because you are subscribed to the Google Groups > "scikit-image" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to scikit-image+unsubscribe(a)googlegroups.com. > For more options, visit https://groups.google.com/d/optout. >

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Sticker review
by Stefan van der Walt 07 Jun '15

07 Jun '15

Hi all, Here is a PR with a potential skimage sticker: https://github.com/scikit-image/skimage-branding/pull/1 What do you think? Stéfan

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missing kernel or block size in equalize_adapthist
by Kai Wiechen 06 Jun '15

06 Jun '15

<https://lh3.googleusercontent.com/-0jVbtyT6ArM/VWNtiWHECgI/AAAAAAAABOg/AKpR…> Hello, I am using equalize_adapthist after color deconvolution and some morphological operations to enhance local contrast of nuclei in histological images. There are different results when applying equalize_adapthist when using small patches and larger size whole images (left small patch, right large size whole image). The CLAHE implementation in ImageJ has a 'block size' parameter and the implementation in Pixinsight has a 'Kernel size' parameter to get results depending on the local context. Is it possible to 'simulate' this behaviour with scikit-image? Best regards, Kai

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Re: GLCM with scikit-image
by Stefan van der Walt 05 Jun '15

05 Jun '15

On 2015-06-05 00:35:54, elyraz(a)mail.com wrote: > I moved to python 3.4 and scikit_image‑0.11.3 amnd when I am > running a script the: from skimage.util import dtype > dtype.log.disabled = True > > I get this error: Traceback (most recent call last): > File "C:/Users/ZDesktop/untitled/d.py", line 16, in <module> > dtype.log.disabled = True > AttributeError: 'module' object has no attribute 'log' The package has changed in the mean time--we no longer use a logging mechanism and you can disable the warning using the standing Python warnings module. Stéfan

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Re: problem with io.imread
by Hélder Tomas 05 Jun '15

05 Jun '15

Hello guys, I had the same issue and it's due to PIL and the libraries needed to read jpeg. It worked fine with png for instance. Pillow has replaced pil, and we might as well remove pil. Remove PIL: *sudo pip uninstall pil* Install the required libraries: * sudo apt-get install libtiff4-dev libjpeg8-dev zlib1g-dev libfreetype6-dev liblcms2-dev libwebp-dev tcl8.5-dev tk8.5-dev python-tk* Install/upgrade pillow : *sudo pip install pillow --upgrade* And your data.imread should work fine now. Hope this helps someone!

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Re: GLCM with scikit-image
by elyraz＠mail.com 05 Jun '15

05 Jun '15

I moved to python 3.4 and scikit_image‑0.11.3 amd when I am running a script the: from skimage.util import dtype dtype.log.disabled = True I get this error: Traceback (most recent call last): File "C:/Users/ZDesktop/untitled/d.py", line 16, in <module> dtype.log.disabled = True AttributeError: 'module' object has no attribute 'log' If I remove the “dtype.log.disabled = True” script line I get this message: C:\Python34\lib\site-packages\skimage\util\dtype.py:111: UserWarning: Possible precision loss when converting from float64 to uint8 "%s to %s" % (dtypeobj_in, dtypeobj)) Therefore, how can I use the dtype and remove the warning message? Thanks a lot

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