Mailman 3 November 2001 - SciPy-Dev

RPMs and source distribution
by Travis Oliphant Dec. 23, 2001

Dec. 23, 2001

I've been playing for hours and finally have it so that python setup.py sdist python setup.by bdist_rpm work as expected. I have distributions and RPM's that I need to put somewhere. Thanks, -Travis

6 14

dgesdd_ problem with scipy
by arnd.baecker＠physik.uni-ulm.de Nov. 28, 2001

Nov. 28, 2001

Hi, I again tried to install scipy, and everything worked out quite fine. However, when I start python and do an import scipy, it ends with ImportError: /home/abaecker/PYTHON/lib/python2.2/site-packages/Numeric/lapack_lite.so: undefined symbol: dgesdd_ First some more details on the install: I installed Python-2.2b2.tgz atlas3.2.1.tgz f2py-2.latest.tgz fftw-2.1.3.tar.gz wxGTK-2.2.7.tar.gz wxPython-2.2.7.tar.gz Numerical and scipy were fetched from todays CVS. Numerical on its own compiles fine and does include in lapack_lite.so the corresponding new LAPACK 3 routines. So if I do (after the installation of scipy) cd scipy/Numerical python setup.py install it builds some different version of lapack_lite.so for which strings ~/PYTHON/lib/python2.2/site-packages/Numeric/lapack_lite.so | grep dgesdd_ gives dgesdd_ dgesdd_ Trying then to do an import scipy (i.e with this lapack_lite.so) gives a different error: File "/home/abaecker/PYTHON/lib/python2.2/site-packages/scipy/basic1a.py", line 9, in ? from scipy.linalg import eig ImportError: cannot import name eig So it seems that this one contains dgesdd but not the routines needed for linalg ?! So, what can I do to resolve the first problem ? (I hope the second will not appear then ... ;-) Best wishes, Arnd

2 1

plt zooming is a memory hog
by Jochen Küpper Nov. 12, 2001

Nov. 12, 2001

Ok, I looked at the problems reported by Eric regarding zooming into images, leading to crashes regularly. (here: Linux 2.4, wxPython 2.3.1, 128MB RAM, 512MB swap) I could not reproduce any lockups or crashes (as reported by Eric). The image is always drawn fine after *some* time, unless I killed the app because I am tired of waiting after a few minutes! The reason why it took so long? Making the shown part of the image small enough (the number of "zooms" doesn't matter, just the size of the selected part), the python process and the Xserver grow to >600 MB together... (v.s.) Well the problem is here: ,----[plot_objects.py:956--963] | def draw(self,dc): | sz = array((self.the_image.GetWidth(),self.the_image.GetHeight())) | sz = sz * abs(self.scale) | sz = sz.astype(Int) | scaled_image = self.the_image.Scale(abs(sz[0]), abs(sz[1])) | bitmap = wxBitmap(scaled_image) | dc.DrawBitmap(bitmap, self.origin[0]+1, | self.origin[1]-scaled_image.GetHeight()+1, wx.false) `---- A wxImage and a wxBitmap of the whole image at the needed resolution is made. These are huge bitmaps if you zoom in a bit, I assume:(( I have no good quick way on how to handle this, but somehow this image_object needs to know which part of itself we are interested in and only draw that... Greetings, Jochen PS: Since changes are still not in cvs and I couldn't find all patches flying around, I attach the version of plt I used. This is a diff against current cvs. PPS: Eric, what's about Linus rule "release early, release often"? It's up to you guys, but I would suggest you release snapshots as often as you encounter an overall reasonably stable source tree, and put changes in cvs as soon as they are there? Or something like that. At least I am tired of sending patches between different machines I am using. I have actually considered setting up my own (private) cvs tree for scipy, but that is not really what I want. -- Einigkeit und Recht und Freiheit http://www.Jochen-Kuepper.de Liberté, Égalité, Fraternité GnuPG key: 44BCCD8E Sex, drugs and rock-n-roll

2 1

Installed on FreeBSD, but no FFT gives errors
by Lytle, Robert TQO Nov. 10, 2001

Nov. 10, 2001

I finally last night installed my hacked SciPy on FreeBSD. I couldn't include the FFTW part because the FreeBSD fftw port has different libararies than Linux evidently. So when I give the command "from scipy import *" I get an error since it is looking for the FFT stuff which was never built. When I get some more time I'll play with it some more. Rob.

2 1

Odd result from plt.IsShown()
by Magnus Lyckå Nov. 9, 2001

Nov. 9, 2001

I'm using plt to display some x-y diagrams in a wxPython app, and I update the plot when I shift or change my data if it's visible, checking plt.IsShown(). This works as it should. When I close the app, I also close the plot window if IsShown() returns true, but sometimes this fails, which causes a Windows error message when I try to close a non-existing window. I start showing my data when I press a "Plot button" like this: def OnPlotButton(self, evt): #Construction of "age" and "y" lists snipped self.plot = plt.plot(age, y) plt.title(self.case.idNr) plt.xtitle('Age (years)') plt.ytitle('Height / Weight (cm /kg)') This works OK. When I change data set, or modify my data set, I do the following: if self.plot.IsShown(): self.OnPlotButton(None) This always works. If the diagram is showing, the data is updated, but if it was closed, or never opened, no new plot will be shown. In other words, IsShown() works as expected. It always runs OnPlotButton when a plot window is open, and it never starts a new window it it's closed. I'll have to press the plot button again, just as I intended. When I close the application, I run: def OnClose(self, event): self.db.close() print "Saving and exiting" try: print "In try block" if self.plot.IsShown(): print "In if..." self.plot.Close() print "After close" else: print "In else" except: print "In except" pass event.Skip() If I never used plot, all is fine. self.plot doesn't exist, so I get an attribute error which I catch in my except clause, printing "In except" before returning my prompt. If the plot windows is active, it will close nicely. If I have used plotting, closed the plot window and then changed data set or modified the current data set before I close the app, all is fine. But if I close the plot window, and then close the app directly, I get a crash on exit. The program prints "Saving and exiting", and then "In if...", indicating that IsShown() quite unexpectedly returned 1! I might have pressed my save button, or clicked away in some other way after closing the plot window, but I haven't changed data in such a way that there would have been a re-plot in case the plot window had been open. I'm quite stunned here, because it seems self.plot.IsShown() acts quite differently in the different places in my code! (And yes, it's all in the same class. :-) I can make my program available if someone would like to take a closer look at it. Another unexpected thing is that I get a Python prompt in the command window where I started my app when I open my plot window! I can't type anything in it, and it closes when I exit my app. BTW, plot seems to leak memory. On a normal exit it says: 16:04:20: There were memory leaks. 16:04:20: ----- Memory dump ----- 16:04:20: wxPrintData at $1B8E4E0, size 112 16:04:20: wxFont at $1B8EEF8, size 12 16:04:20: wxFont at $1B8D2C0, size 12 16:04:20: wxFont at $1B8C940, size 12 16:04:20: wxFont at $1B8C1D0, size 12 16:04:20: wxFont at $1B8B500, size 12 16:04:20: wxEvtHandler at $1B8A830, size 40 16:04:20: wxPyCallback at $1B88AB0, size 12 16:04:20: wxObject at $1B88A20, size 28 16:04:20: 16:04:20: 16:04:20: ----- Memory statistics ----- 16:04:20: 1 objects of class wxObject, total size 28 16:04:20: 1 objects of class wxPyCallback, total size 12 16:04:20: 1 objects of class wxEvtHandler, total size 40 16:04:20: 5 objects of class wxFont, total size 60 16:04:20: 1 objects of class wxPrintData, total size 112 16:04:20: 16:04:20: Number of object items: 9 16:04:20: Number of non-object items: 0 16:04:20: Total allocated size: 252 16:04:20: 16:04:20: -- Magnus Lyckå, Thinkware AB Älvans väg 99, SE-907 50 UMEÅ tel 070-582 80 65, fax: 070-612 80 65 http://www.thinkware.se/ mailto:magnus@thinkware.se

3 8

got it built for FreeBSD
by Rob Nov. 6, 2001

Nov. 6, 2001

I needed to make this change to fortran_support.py: 43c43 < self.fortran_libraries = None --- > self.fortran_libraries = "" 131c131 < --- > self.library_dirs=[" "] Tomorrow I'll install it and see if everything works. Rob. -- The Numeric Python EM Project www.members.home.net/europax

1 0

some progress on Freebsd 4.4-stable build
by Rob Nov. 6, 2001

Nov. 6, 2001

The following changes in setup.py allows the X11 stuff to build: 217c217 < include_dirs = ['/usr/include/X11'], --- > include_dirs = ['/usr/X11R6/include'], 506c506 < --- > other=None 531,532c531,532 < headers = headers, < include_dirs = ['Numerical/Include'] --- > headers = headers, > include_dirs = ['Numerical/Include','/usr/X11R6/include'] After making those changes I progress quite a way until it borks. Here is the output: Script started on Mon Nov 5 18:31:49 2001 Numeric Version 20.1.1 running build running build_py not copying ./setup.py (output up-to-date) not copying ./__init__.py (output up-to-date) not copying ./build_clib_new.py (output up-to-date) not copying ./build_flib.py (output up-to-date) not copying ./data_store.py (output up-to-date) not copying ./misc.py (output up-to-date) not copying ./dumb_shelve.py (output up-to-date) not copying ./dumbdbm_patched.py (output up-to-date) not copying ./fortran_support.py (output up-to-date) not copying ./handy.py (output up-to-date) not copying ./helpmod.py (output up-to-date) not copying ./limits.py (output up-to-date) not copying ./proc.py (output up-to-date) not copying ./saved_values.py (output up-to-date) not copying ./scipy_tempfile.py (output up-to-date) not copying ./scipy_test.py (output up-to-date) not copying ./scipy_version.py (output up-to-date) not copying ./sync.py (output up-to-date) warning: build_py: package init file './tests/__init__.py' not found (or not a regular file) not copying ./tests/test_limits.py (output up-to-date) not copying ./tests/test_misc.py (output up-to-date) not copying gui_thread/__init__.py (output up-to-date) not copying gui_thread/examples.py (output up-to-date) not copying gui_thread/gui_thread_guts.py (output up-to-date) not copying gui_thread/main.py (output up-to-date) not copying ./plt/__init__.py (output up-to-date) not copying ./plt/dumb_shelve.py (output up-to-date) not copying ./plt/dumbdbm_patched.py (output up-to-date) not copying ./plt/interface.py (output up-to-date) not copying ./plt/plot_objects.py (output up-to-date) not copying ./plt/plot_utility.py (output up-to-date) not copying ./plt/wxplt.py (output up-to-date) not copying ./gplt/__init__.py (output up-to-date) not copying ./gplt/interface.py (output up-to-date) not copying ./gplt/new_plot.py (output up-to-date) not copying ./gplt/pyPlot.py (output up-to-date) not copying ./cluster/__init__.py (output up-to-date) not copying ./cluster/setup.py (output up-to-date) not copying ./cluster/vq.py (output up-to-date) warning: build_py: package init file './cluster/tests/__init__.py' not found (or not a regular file) not copying ./cluster/tests/vq_test.py (output up-to-date) not copying ./cow/__init__.py (output up-to-date) not copying ./cow/cow.py (output up-to-date) not copying ./cow/herd.py (output up-to-date) not copying ./cow/sync_cluster.py (output up-to-date) not copying ./ga/__init__.py (output up-to-date) not copying ./ga/algorithm.py (output up-to-date) not copying ./ga/examples.py (output up-to-date) not copying ./ga/ga_gnm.py (output up-to-date) not copying ./ga/ga_list.py (output up-to-date) not copying ./ga/ga_util.py (output up-to-date) not copying ./ga/gene.py (output up-to-date) not copying ./ga/genome.py (output up-to-date) not copying ./ga/language.py (output up-to-date) not copying ./ga/parallel_pop.py (output up-to-date) not copying ./ga/population.py (output up-to-date) not copying ./ga/scaling.py (output up-to-date) not copying ./ga/selection.py (output up-to-date) not copying ./ga/tree.py (output up-to-date) not copying ./ga/tree_opt.py (output up-to-date) not copying ./compiler/__init__.py (output up-to-date) not copying ./compiler/build_tools.py (output up-to-date) not copying ./compiler/code_blocks.py (output up-to-date) not copying ./compiler/compile_code.py (output up-to-date) not copying ./compiler/lib2def.py (output up-to-date) not copying ./compiler/misc.py (output up-to-date) not copying ./compiler/size_check.py (output up-to-date) not copying ./compiler/slice_handler.py (output up-to-date) warning: build_py: package init file './compiler/tests/__init__.py' not found (or not a regular file) not copying ./compiler/tests/test_compile_code.py (output up-to-date) not copying ./compiler/tests/test_size_check.py (output up-to-date) not copying ./compiler/tests/test_slice_handler.py (output up-to-date) not copying ./io/__init__.py (output up-to-date) not copying ./io/mio.py (output up-to-date) not copying ./io/array_import.py (output up-to-date) not copying ./signal/__init__.py (output up-to-date) not copying ./signal/bsplines.py (output up-to-date) not copying ./signal/filter_design.py (output up-to-date) not copying ./signal/signaltools.py (output up-to-date) not copying ./stats/__init__.py (output up-to-date) not copying ./stats/new_stats.py (output up-to-date) not copying ./stats/pstat.py (output up-to-date) not copying ./stats/rv.py (output up-to-date) not copying ./stats/stats.py (output up-to-date) not copying ./xplt/GistPlotter.py (output up-to-date) not copying ./xplt/Graphics.py (output up-to-date) not copying ./xplt/Mplot.py (output up-to-date) not copying ./xplt/NarPlotter.py (output up-to-date) not copying ./xplt/__init__.py (output up-to-date) not copying ./xplt/animation2d.py (output up-to-date) not copying ./xplt/berts.py (output up-to-date) not copying ./xplt/cellarray.py (output up-to-date) not copying ./xplt/colorbar.py (output up-to-date) not copying ./xplt/curve.py (output up-to-date) not copying ./xplt/demo5.py (output up-to-date) not copying ./xplt/ezplot.py (output up-to-date) not copying ./xplt/eztest.py (output up-to-date) not copying ./xplt/gist.py (output up-to-date) not copying ./xplt/gist3dhelp.py (output up-to-date) not copying ./xplt/gistdemohigh.py (output up-to-date) not copying ./xplt/gistdemolow.py (output up-to-date) not copying ./xplt/gistmeshtest.py (output up-to-date) not copying ./xplt/gisttest2d.py (output up-to-date) not copying ./xplt/gisttest3d.py (output up-to-date) not copying ./xplt/graftest2d.py (output up-to-date) not copying ./xplt/graftypes.py (output up-to-date) not copying ./xplt/graph.py (output up-to-date) not copying ./xplt/graph2d.py (output up-to-date) not copying ./xplt/graph3d.py (output up-to-date) not copying ./xplt/helpmod.py (output up-to-date) not copying ./xplt/lines.py (output up-to-date) not copying ./xplt/mesh3d.py (output up-to-date) not copying ./xplt/meshtest.py (output up-to-date) not copying ./xplt/movie.py (output up-to-date) not copying ./xplt/nicks.py (output up-to-date) not copying ./xplt/pl3d.py (output up-to-date) not copying ./xplt/plane.py (output up-to-date) not copying ./xplt/plwf.py (output up-to-date) not copying ./xplt/polymap.py (output up-to-date) not copying ./xplt/quadmesh.py (output up-to-date) not copying ./xplt/region.py (output up-to-date) not copying ./xplt/shapetest.py (output up-to-date) not copying ./xplt/slice3.py (output up-to-date) not copying ./xplt/sphereisos.py (output up-to-date) not copying ./xplt/surface.py (output up-to-date) not copying ./xplt/surftest3d.py (output up-to-date) not copying ./xplt/surftest4d.py (output up-to-date) not copying ./xplt/twograftest2d.py (output up-to-date) not copying ./xplt/write_style.py (output up-to-date) not copying ./xplt/yorick.py (output up-to-date) not copying ./fft/FFT2.py (output up-to-date) not copying ./fft/FFT2threads.py (output up-to-date) not copying ./fft/FFTWthreads.py (output up-to-date) not copying ./fft/__init__.py (output up-to-date) not copying ./fft/benchFFT2.py (output up-to-date) not copying ./fft/benchFFT2threads.py (output up-to-date) not copying ./fft/benchFFTWthreads.py (output up-to-date) not copying ./special/__init__.py (output up-to-date) not copying ./special/gendoc.py (output up-to-date) not copying ./special/special.py (output up-to-date) not copying ./interpolate/__init__.py (output up-to-date) not copying ./interpolate/common_routines.py (output up-to-date) not copying ./interpolate/fitpack.py (output up-to-date) not copying ./interpolate/interpolate.py (output up-to-date) not copying ./optimize/__init__.py (output up-to-date) not copying ./optimize/common_routines.py (output up-to-date) not copying ./optimize/minpack.py (output up-to-date) not copying ./optimize/optimize.py (output up-to-date) not copying ./integrate/__init__.py (output up-to-date) not copying ./integrate/common_routines.py (output up-to-date) not copying ./integrate/odepack.py (output up-to-date) not copying ./integrate/orthogonal.py (output up-to-date) not copying ./integrate/quadpack.py (output up-to-date) not copying ./integrate/quadrature.py (output up-to-date) warning: build_py: package init file './Numerical/Lib/__init__.py' not found (or not a regular file) not copying ./Numerical/Lib/ArrayPrinter.py (output up-to-date) not copying ./Numerical/Lib/LinearAlgebra.py (output up-to-date) not copying ./Numerical/Lib/MLab.py (output up-to-date) not copying ./Numerical/Lib/Matrix.py (output up-to-date) not copying ./Numerical/Lib/Numeric.py (output up-to-date) not copying ./Numerical/Lib/Precision.py (output up-to-date) not copying ./Numerical/Lib/RandomArray.py (output up-to-date) not copying ./Numerical/Lib/UserArray.py (output up-to-date) not copying ./Numerical/Lib/numeric_version.py (output up-to-date) warning: build_py: package init file './tests/__init__.py' not found (or not a regular file) warning: build_py: package init file './cluster/tests/__init__.py' not found (or not a regular file) warning: build_py: package init file './compiler/tests/__init__.py' not found (or not a regular file) warning: build_py: package init file './Numerical/Lib/__init__.py' not found (or not a regular file) running build_clib building 'gist' library skipping xplt/gist/cgm.c (build/temp.freebsd-4.4-STABLE-i386-2.1/cgm.o up-to-date) skipping xplt/gist/clip.c (build/temp.freebsd-4.4-STABLE-i386-2.1/clip.o up-to-date) skipping xplt/gist/dispas.c (build/temp.freebsd-4.4-STABLE-i386-2.1/dispas.o up-to-date) skipping xplt/gist/dispat.c (build/temp.freebsd-4.4-STABLE-i386-2.1/dispat.o up-to-date) skipping xplt/gist/dispax.c (build/temp.freebsd-4.4-STABLE-i386-2.1/dispax.o up-to-date) skipping xplt/gist/draw.c (build/temp.freebsd-4.4-STABLE-i386-2.1/draw.o up-to-date) skipping xplt/gist/draw0.c (build/temp.freebsd-4.4-STABLE-i386-2.1/draw0.o up-to-date) skipping xplt/gist/engine.c (build/temp.freebsd-4.4-STABLE-i386-2.1/engine.o up-to-date) skipping xplt/gist/gcntr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/gcntr.o up-to-date) skipping xplt/gist/gist.c (build/temp.freebsd-4.4-STABLE-i386-2.1/gist.o up-to-date) skipping xplt/gist/gread.c (build/temp.freebsd-4.4-STABLE-i386-2.1/gread.o up-to-date) skipping xplt/gist/gtext.c (build/temp.freebsd-4.4-STABLE-i386-2.1/gtext.o up-to-date) skipping xplt/gist/hlevel.c (build/temp.freebsd-4.4-STABLE-i386-2.1/hlevel.o up-to-date) skipping xplt/gist/host.c (build/temp.freebsd-4.4-STABLE-i386-2.1/host.o up-to-date) skipping xplt/gist/osys.c (build/temp.freebsd-4.4-STABLE-i386-2.1/osys.o up-to-date) skipping xplt/gist/ps.c (build/temp.freebsd-4.4-STABLE-i386-2.1/ps.o up-to-date) skipping xplt/gist/tick.c (build/temp.freebsd-4.4-STABLE-i386-2.1/tick.o up-to-date) skipping xplt/gist/tick60.c (build/temp.freebsd-4.4-STABLE-i386-2.1/tick60.o up-to-date) skipping xplt/gist/xbasic.c (build/temp.freebsd-4.4-STABLE-i386-2.1/xbasic.o up-to-date) skipping xplt/gist/xfancy.c (build/temp.freebsd-4.4-STABLE-i386-2.1/xfancy.o up-to-date) skipping xplt/gist/xfont.c (build/temp.freebsd-4.4-STABLE-i386-2.1/xfont.o up-to-date) skipping xplt/gist/xicky.c (build/temp.freebsd-4.4-STABLE-i386-2.1/xicky.o up-to-date) skipping build/temp.freebsd-4.4-STABLE-i386-2.1/libgist.a (up-to-date) building 'c_misc' library skipping special/c_misc/besselpoly.c (build/temp.freebsd-4.4-STABLE-i386-2.1/besselpoly.o up-to-date) skipping build/temp.freebsd-4.4-STABLE-i386-2.1/libc_misc.a (up-to-date) building 'cephes' library skipping special/cephes/airy.c (build/temp.freebsd-4.4-STABLE-i386-2.1/airy.o up-to-date) skipping special/cephes/bdtr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/bdtr.o up-to-date) skipping special/cephes/beta.c (build/temp.freebsd-4.4-STABLE-i386-2.1/beta.o up-to-date) skipping special/cephes/btdtr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/btdtr.o up-to-date) skipping special/cephes/cbrt.c (build/temp.freebsd-4.4-STABLE-i386-2.1/cbrt.o up-to-date) skipping special/cephes/chbevl.c (build/temp.freebsd-4.4-STABLE-i386-2.1/chbevl.o up-to-date) skipping special/cephes/chdtr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/chdtr.o up-to-date) skipping special/cephes/clog.c (build/temp.freebsd-4.4-STABLE-i386-2.1/clog.o up-to-date) skipping special/cephes/cmplx.c (build/temp.freebsd-4.4-STABLE-i386-2.1/cmplx.o up-to-date) skipping special/cephes/const.c (build/temp.freebsd-4.4-STABLE-i386-2.1/const.o up-to-date) skipping special/cephes/cpmul.c (build/temp.freebsd-4.4-STABLE-i386-2.1/cpmul.o up-to-date) skipping special/cephes/dawsn.c (build/temp.freebsd-4.4-STABLE-i386-2.1/dawsn.o up-to-date) skipping special/cephes/ellie.c (build/temp.freebsd-4.4-STABLE-i386-2.1/ellie.o up-to-date) skipping special/cephes/ellik.c (build/temp.freebsd-4.4-STABLE-i386-2.1/ellik.o up-to-date) skipping special/cephes/ellpe.c (build/temp.freebsd-4.4-STABLE-i386-2.1/ellpe.o up-to-date) skipping special/cephes/ellpj.c (build/temp.freebsd-4.4-STABLE-i386-2.1/ellpj.o up-to-date) skipping special/cephes/ellpk.c (build/temp.freebsd-4.4-STABLE-i386-2.1/ellpk.o up-to-date) skipping special/cephes/euclid.c (build/temp.freebsd-4.4-STABLE-i386-2.1/euclid.o up-to-date) skipping special/cephes/exp.c (build/temp.freebsd-4.4-STABLE-i386-2.1/exp.o up-to-date) skipping special/cephes/exp10.c (build/temp.freebsd-4.4-STABLE-i386-2.1/exp10.o up-to-date) skipping special/cephes/exp2.c (build/temp.freebsd-4.4-STABLE-i386-2.1/exp2.o up-to-date) skipping special/cephes/expn.c (build/temp.freebsd-4.4-STABLE-i386-2.1/expn.o up-to-date) skipping special/cephes/fabs.c (build/temp.freebsd-4.4-STABLE-i386-2.1/fabs.o up-to-date) skipping special/cephes/fdtr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/fdtr.o up-to-date) skipping special/cephes/fftr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/fftr.o up-to-date) skipping special/cephes/floor.c (build/temp.freebsd-4.4-STABLE-i386-2.1/floor.o up-to-date) skipping special/cephes/fresnl.c (build/temp.freebsd-4.4-STABLE-i386-2.1/fresnl.o up-to-date) skipping special/cephes/gamma.c (build/temp.freebsd-4.4-STABLE-i386-2.1/gamma.o up-to-date) skipping special/cephes/gdtr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/gdtr.o up-to-date) skipping special/cephes/gels.c (build/temp.freebsd-4.4-STABLE-i386-2.1/gels.o up-to-date) skipping special/cephes/hyp2f1.c (build/temp.freebsd-4.4-STABLE-i386-2.1/hyp2f1.o up-to-date) skipping special/cephes/hyperg.c (build/temp.freebsd-4.4-STABLE-i386-2.1/hyperg.o up-to-date) skipping special/cephes/i0.c (build/temp.freebsd-4.4-STABLE-i386-2.1/i0.o up-to-date) skipping special/cephes/i1.c (build/temp.freebsd-4.4-STABLE-i386-2.1/i1.o up-to-date) skipping special/cephes/igam.c (build/temp.freebsd-4.4-STABLE-i386-2.1/igam.o up-to-date) skipping special/cephes/igami.c (build/temp.freebsd-4.4-STABLE-i386-2.1/igami.o up-to-date) skipping special/cephes/incbet.c (build/temp.freebsd-4.4-STABLE-i386-2.1/incbet.o up-to-date) skipping special/cephes/incbi.c (build/temp.freebsd-4.4-STABLE-i386-2.1/incbi.o up-to-date) skipping special/cephes/isnan.c (build/temp.freebsd-4.4-STABLE-i386-2.1/isnan.o up-to-date) skipping special/cephes/iv.c (build/temp.freebsd-4.4-STABLE-i386-2.1/iv.o up-to-date) skipping special/cephes/j0.c (build/temp.freebsd-4.4-STABLE-i386-2.1/j0.o up-to-date) skipping special/cephes/j1.c (build/temp.freebsd-4.4-STABLE-i386-2.1/j1.o up-to-date) skipping special/cephes/jn.c (build/temp.freebsd-4.4-STABLE-i386-2.1/jn.o up-to-date) skipping special/cephes/jv.c (build/temp.freebsd-4.4-STABLE-i386-2.1/jv.o up-to-date) skipping special/cephes/k0.c (build/temp.freebsd-4.4-STABLE-i386-2.1/k0.o up-to-date) skipping special/cephes/k1.c (build/temp.freebsd-4.4-STABLE-i386-2.1/k1.o up-to-date) skipping special/cephes/kn.c (build/temp.freebsd-4.4-STABLE-i386-2.1/kn.o up-to-date) skipping special/cephes/kolmogorov.c (build/temp.freebsd-4.4-STABLE-i386-2.1/kolmogorov.o up-to-date) skipping special/cephes/levnsn.c (build/temp.freebsd-4.4-STABLE-i386-2.1/levnsn.o up-to-date) skipping special/cephes/log.c (build/temp.freebsd-4.4-STABLE-i386-2.1/log.o up-to-date) skipping special/cephes/log10.c (build/temp.freebsd-4.4-STABLE-i386-2.1/log10.o up-to-date) skipping special/cephes/log2.c (build/temp.freebsd-4.4-STABLE-i386-2.1/log2.o up-to-date) skipping special/cephes/lsqrt.c (build/temp.freebsd-4.4-STABLE-i386-2.1/lsqrt.o up-to-date) skipping special/cephes/mmmpy.c (build/temp.freebsd-4.4-STABLE-i386-2.1/mmmpy.o up-to-date) skipping special/cephes/mtherr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/mtherr.o up-to-date) skipping special/cephes/mtransp.c (build/temp.freebsd-4.4-STABLE-i386-2.1/mtransp.o up-to-date) skipping special/cephes/mvmpy.c (build/temp.freebsd-4.4-STABLE-i386-2.1/mvmpy.o up-to-date) skipping special/cephes/nbdtr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/nbdtr.o up-to-date) skipping special/cephes/ndtr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/ndtr.o up-to-date) skipping special/cephes/ndtri.c (build/temp.freebsd-4.4-STABLE-i386-2.1/ndtri.o up-to-date) skipping special/cephes/pdtr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/pdtr.o up-to-date) skipping special/cephes/polevl.c (build/temp.freebsd-4.4-STABLE-i386-2.1/polevl.o up-to-date) skipping special/cephes/polmisc.c (build/temp.freebsd-4.4-STABLE-i386-2.1/polmisc.o up-to-date) skipping special/cephes/polrt.c (build/temp.freebsd-4.4-STABLE-i386-2.1/polrt.o up-to-date) skipping special/cephes/polyn.c (build/temp.freebsd-4.4-STABLE-i386-2.1/polyn.o up-to-date) skipping special/cephes/pow.c (build/temp.freebsd-4.4-STABLE-i386-2.1/pow.o up-to-date) skipping special/cephes/powi.c (build/temp.freebsd-4.4-STABLE-i386-2.1/powi.o up-to-date) skipping special/cephes/psi.c (build/temp.freebsd-4.4-STABLE-i386-2.1/psi.o up-to-date) skipping special/cephes/rgamma.c (build/temp.freebsd-4.4-STABLE-i386-2.1/rgamma.o up-to-date) skipping special/cephes/round.c (build/temp.freebsd-4.4-STABLE-i386-2.1/round.o up-to-date) skipping special/cephes/setprec.c (build/temp.freebsd-4.4-STABLE-i386-2.1/setprec.o up-to-date) skipping special/cephes/shichi.c (build/temp.freebsd-4.4-STABLE-i386-2.1/shichi.o up-to-date) skipping special/cephes/sici.c (build/temp.freebsd-4.4-STABLE-i386-2.1/sici.o up-to-date) skipping special/cephes/simpsn.c (build/temp.freebsd-4.4-STABLE-i386-2.1/simpsn.o up-to-date) skipping special/cephes/simq.c (build/temp.freebsd-4.4-STABLE-i386-2.1/simq.o up-to-date) skipping special/cephes/sincos.c (build/temp.freebsd-4.4-STABLE-i386-2.1/sincos.o up-to-date) skipping special/cephes/sindg.c (build/temp.freebsd-4.4-STABLE-i386-2.1/sindg.o up-to-date) skipping special/cephes/spence.c (build/temp.freebsd-4.4-STABLE-i386-2.1/spence.o up-to-date) skipping special/cephes/sqrt.c (build/temp.freebsd-4.4-STABLE-i386-2.1/sqrt.o up-to-date) skipping special/cephes/stdtr.c (build/temp.freebsd-4.4-STABLE-i386-2.1/stdtr.o up-to-date) skipping special/cephes/struve.c (build/temp.freebsd-4.4-STABLE-i386-2.1/struve.o up-to-date) skipping special/cephes/tandg.c (build/temp.freebsd-4.4-STABLE-i386-2.1/tandg.o up-to-date) skipping special/cephes/time-it.c (build/temp.freebsd-4.4-STABLE-i386-2.1/time-it.o up-to-date) skipping special/cephes/unity.c (build/temp.freebsd-4.4-STABLE-i386-2.1/unity.o up-to-date) skipping special/cephes/yn.c (build/temp.freebsd-4.4-STABLE-i386-2.1/yn.o up-to-date) skipping special/cephes/zeta.c (build/temp.freebsd-4.4-STABLE-i386-2.1/zeta.o up-to-date) skipping special/cephes/zetac.c (build/temp.freebsd-4.4-STABLE-i386-2.1/zetac.o up-to-date) skipping build/temp.freebsd-4.4-STABLE-i386-2.1/libcephes.a (up-to-date) running build_flib Gnu 2.95.3 building 'amos' library ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libamos.a build/temp.freebsd-4.4-STABLE-i386-2.1/dgamln.o build/temp.freebsd-4.4-STABLE-i386-2.1/dsclmr.o build/temp.freebsd-4.4-STABLE-i386-2.1/fdump.o build/temp.freebsd-4.4-STABLE-i386-2.1/zabs.o build/temp.freebsd-4.4-STABLE-i386-2.1/zacai.o build/temp.freebsd-4.4-STABLE-i386-2.1/zacon.o build/temp.freebsd-4.4-STABLE-i386-2.1/zairy.o build/temp.freebsd-4.4-STABLE-i386-2.1/zasyi.o build/temp.freebsd-4.4-STABLE-i386-2.1/zbesh.o build/temp.freebsd-4.4-STABLE-i386-2.1/zbesi.o build/temp.freebsd-4.4-STABLE-i386-2.1/zbesj.o build/temp.freebsd-4.4-STABLE-i386-2.1/zbesk.o build/temp.freebsd-4.4-STABLE-i386-2.1/zbesy.o build/temp.freebsd-4.4-STABLE-i386-2.1/zbinu.o build/temp.freebsd-4.4-STABLE-i386-2.1/zbiry.o build/temp.freebsd-4.4-STABLE-i386-2.1/zbknu.o build/temp.freebsd-4.4-STABLE-i386-2.1/zbuni.o build/temp.freebsd-4.4-STABLE-i386-2.1/zbunk.o build/temp.freebsd-4.4-STABLE-i386-2.1/zdiv.o build/temp.freebsd-4.4-STABLE-i386-2.1/zexp.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libamos.a build/temp.freebsd-4.4-STABLE-i386-2.1/zkscl.o build/temp.freebsd-4.4-STABLE-i386-2.1/zlog.o build/temp.freebsd-4.4-STABLE-i386-2.1/zmlri.o build/temp.freebsd-4.4-STABLE-i386-2.1/zmlt.o build/temp.freebsd-4.4-STABLE-i386-2.1/zrati.o build/temp.freebsd-4.4-STABLE-i386-2.1/zs1s2.o build/temp.freebsd-4.4-STABLE-i386-2.1/zseri.o build/temp.freebsd-4.4-STABLE-i386-2.1/zshch.o build/temp.freebsd-4.4-STABLE-i386-2.1/zsqrt.o build/temp.freebsd-4.4-STABLE-i386-2.1/zuchk.o build/temp.freebsd-4.4-STABLE-i386-2.1/zunhj.o build/temp.freebsd-4.4-STABLE-i386-2.1/zuni1.o build/temp.freebsd-4.4-STABLE-i386-2.1/zuni2.o build/temp.freebsd-4.4-STABLE-i386-2.1/zunik.o build/temp.freebsd-4.4-STABLE-i386-2.1/zunk1.o build/temp.freebsd-4.4-STABLE-i386-2.1/zunk2.o build/temp.freebsd-4.4-STABLE-i386-2.1/zuoik.o build/temp.freebsd-4.4-STABLE-i386-2.1/zwrsk.o building 'toms' library ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libtoms.a build/temp.freebsd-4.4-STABLE-i386-2.1/wofz.o building 'fitpack' library ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libfitpack.a build/temp.freebsd-4.4-STABLE-i386-2.1/bispev.o build/temp.freebsd-4.4-STABLE-i386-2.1/clocur.o build/temp.freebsd-4.4-STABLE-i386-2.1/cocosp.o build/temp.freebsd-4.4-STABLE-i386-2.1/concon.o build/temp.freebsd-4.4-STABLE-i386-2.1/concur.o build/temp.freebsd-4.4-STABLE-i386-2.1/cualde.o build/temp.freebsd-4.4-STABLE-i386-2.1/curev.o build/temp.freebsd-4.4-STABLE-i386-2.1/curfit.o build/temp.freebsd-4.4-STABLE-i386-2.1/dblint.o build/temp.freebsd-4.4-STABLE-i386-2.1/evapol.o build/temp.freebsd-4.4-STABLE-i386-2.1/fourco.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpader.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpadno.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpadpo.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpback.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpbacp.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpbfout.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpbisp.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpbspl.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpchec.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libfitpack.a build/temp.freebsd-4.4-STABLE-i386-2.1/fpched.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpchep.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpclos.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpcoco.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpcons.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpcosp.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpcsin.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpcurf.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpcuro.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpcyt1.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpcyt2.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpdeno.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpdisc.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpfrno.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpgivs.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpgrdi.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpgrpa.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpgrre.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpgrsp.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpinst.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libfitpack.a build/temp.freebsd-4.4-STABLE-i386-2.1/fpintb.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpknot.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpopdi.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpopsp.o build/temp.freebsd-4.4-STABLE-i386-2.1/fporde.o build/temp.freebsd-4.4-STABLE-i386-2.1/fppara.o build/temp.freebsd-4.4-STABLE-i386-2.1/fppasu.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpperi.o build/temp.freebsd-4.4-STABLE-i386-2.1/fppocu.o build/temp.freebsd-4.4-STABLE-i386-2.1/fppogr.o build/temp.freebsd-4.4-STABLE-i386-2.1/fppola.o build/temp.freebsd-4.4-STABLE-i386-2.1/fprank.o build/temp.freebsd-4.4-STABLE-i386-2.1/fprati.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpregr.o build/temp.freebsd-4.4-STABLE-i386-2.1/fprota.o build/temp.freebsd-4.4-STABLE-i386-2.1/fprppo.o build/temp.freebsd-4.4-STABLE-i386-2.1/fprpsp.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpseno.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpspgr.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpsphe.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libfitpack.a build/temp.freebsd-4.4-STABLE-i386-2.1/fpsuev.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpsurf.o build/temp.freebsd-4.4-STABLE-i386-2.1/fpsysy.o build/temp.freebsd-4.4-STABLE-i386-2.1/fptrnp.o build/temp.freebsd-4.4-STABLE-i386-2.1/fptrpe.o build/temp.freebsd-4.4-STABLE-i386-2.1/insert.o build/temp.freebsd-4.4-STABLE-i386-2.1/parcur.o build/temp.freebsd-4.4-STABLE-i386-2.1/parder.o build/temp.freebsd-4.4-STABLE-i386-2.1/parsur.o build/temp.freebsd-4.4-STABLE-i386-2.1/percur.o build/temp.freebsd-4.4-STABLE-i386-2.1/pogrid.o build/temp.freebsd-4.4-STABLE-i386-2.1/polar.o build/temp.freebsd-4.4-STABLE-i386-2.1/profil.o build/temp.freebsd-4.4-STABLE-i386-2.1/regrid.o build/temp.freebsd-4.4-STABLE-i386-2.1/splev.o build/temp.freebsd-4.4-STABLE-i386-2.1/spalde.o build/temp.freebsd-4.4-STABLE-i386-2.1/spgrid.o build/temp.freebsd-4.4-STABLE-i386-2.1/sphere.o build/temp.freebsd-4.4-STABLE-i386-2.1/splder.o build/temp.freebsd-4.4-STABLE-i386-2.1/splint.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libfitpack.a build/temp.freebsd-4.4-STABLE-i386-2.1/sproot.o build/temp.freebsd-4.4-STABLE-i386-2.1/surev.o build/temp.freebsd-4.4-STABLE-i386-2.1/surfit.o building 'minpack' library ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libminpack.a build/temp.freebsd-4.4-STABLE-i386-2.1/chkder.o build/temp.freebsd-4.4-STABLE-i386-2.1/dogleg.o build/temp.freebsd-4.4-STABLE-i386-2.1/dpmpar.o build/temp.freebsd-4.4-STABLE-i386-2.1/enorm.o build/temp.freebsd-4.4-STABLE-i386-2.1/fdjac1.o build/temp.freebsd-4.4-STABLE-i386-2.1/fdjac2.o build/temp.freebsd-4.4-STABLE-i386-2.1/hybrd.o build/temp.freebsd-4.4-STABLE-i386-2.1/hybrd1.o build/temp.freebsd-4.4-STABLE-i386-2.1/hybrj.o build/temp.freebsd-4.4-STABLE-i386-2.1/hybrj1.o build/temp.freebsd-4.4-STABLE-i386-2.1/lmder.o build/temp.freebsd-4.4-STABLE-i386-2.1/lmder1.o build/temp.freebsd-4.4-STABLE-i386-2.1/lmdif.o build/temp.freebsd-4.4-STABLE-i386-2.1/lmdif1.o build/temp.freebsd-4.4-STABLE-i386-2.1/lmpar.o build/temp.freebsd-4.4-STABLE-i386-2.1/lmstr.o build/temp.freebsd-4.4-STABLE-i386-2.1/lmstr1.o build/temp.freebsd-4.4-STABLE-i386-2.1/qform.o build/temp.freebsd-4.4-STABLE-i386-2.1/qrfac.o build/temp.freebsd-4.4-STABLE-i386-2.1/qrsolv.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libminpack.a build/temp.freebsd-4.4-STABLE-i386-2.1/r1mpyq.o build/temp.freebsd-4.4-STABLE-i386-2.1/r1updt.o build/temp.freebsd-4.4-STABLE-i386-2.1/rwupdt.o building 'quadpack' library ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libquadpack.a build/temp.freebsd-4.4-STABLE-i386-2.1/dqag.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqage.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqagi.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqagie.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqagp.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqagpe.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqags.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqagse.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqawc.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqawce.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqawf.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqawfe.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqawo.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqawoe.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqaws.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqawse.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqc25c.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqc25f.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqc25s.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqcheb.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libquadpack.a build/temp.freebsd-4.4-STABLE-i386-2.1/dqelg.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqk15.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqk15i.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqk15w.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqk21.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqk31.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqk41.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqk51.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqk61.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqmomo.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqng.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqpsrt.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqwgtc.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqwgtf.o build/temp.freebsd-4.4-STABLE-i386-2.1/dqwgts.o building 'odepack' library ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libodepack.a build/temp.freebsd-4.4-STABLE-i386-2.1/adjlr.o build/temp.freebsd-4.4-STABLE-i386-2.1/aigbt.o build/temp.freebsd-4.4-STABLE-i386-2.1/ainvg.o build/temp.freebsd-4.4-STABLE-i386-2.1/blkdta000.o build/temp.freebsd-4.4-STABLE-i386-2.1/bnorm.o build/temp.freebsd-4.4-STABLE-i386-2.1/cdrv.o build/temp.freebsd-4.4-STABLE-i386-2.1/cfode.o build/temp.freebsd-4.4-STABLE-i386-2.1/cntnzu.o build/temp.freebsd-4.4-STABLE-i386-2.1/ddasrt.o build/temp.freebsd-4.4-STABLE-i386-2.1/ddassl.o build/temp.freebsd-4.4-STABLE-i386-2.1/decbt.o build/temp.freebsd-4.4-STABLE-i386-2.1/ewset.o build/temp.freebsd-4.4-STABLE-i386-2.1/fnorm.o build/temp.freebsd-4.4-STABLE-i386-2.1/intdy.o build/temp.freebsd-4.4-STABLE-i386-2.1/iprep.o build/temp.freebsd-4.4-STABLE-i386-2.1/jgroup.o build/temp.freebsd-4.4-STABLE-i386-2.1/lsoda.o build/temp.freebsd-4.4-STABLE-i386-2.1/lsodar.o build/temp.freebsd-4.4-STABLE-i386-2.1/lsode.o build/temp.freebsd-4.4-STABLE-i386-2.1/lsodes.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libodepack.a build/temp.freebsd-4.4-STABLE-i386-2.1/lsodi.o build/temp.freebsd-4.4-STABLE-i386-2.1/lsoibt.o build/temp.freebsd-4.4-STABLE-i386-2.1/md.o build/temp.freebsd-4.4-STABLE-i386-2.1/mdi.o build/temp.freebsd-4.4-STABLE-i386-2.1/mdm.o build/temp.freebsd-4.4-STABLE-i386-2.1/mdp.o build/temp.freebsd-4.4-STABLE-i386-2.1/mdu.o build/temp.freebsd-4.4-STABLE-i386-2.1/nnfc.o build/temp.freebsd-4.4-STABLE-i386-2.1/nnsc.o build/temp.freebsd-4.4-STABLE-i386-2.1/nntc.o build/temp.freebsd-4.4-STABLE-i386-2.1/nroc.o build/temp.freebsd-4.4-STABLE-i386-2.1/nsfc.o build/temp.freebsd-4.4-STABLE-i386-2.1/odrv.o build/temp.freebsd-4.4-STABLE-i386-2.1/pjibt.o build/temp.freebsd-4.4-STABLE-i386-2.1/prep.o build/temp.freebsd-4.4-STABLE-i386-2.1/prepj.o build/temp.freebsd-4.4-STABLE-i386-2.1/prepji.o build/temp.freebsd-4.4-STABLE-i386-2.1/prja.o build/temp.freebsd-4.4-STABLE-i386-2.1/prjs.o build/temp.freebsd-4.4-STABLE-i386-2.1/rchek.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libodepack.a build/temp.freebsd-4.4-STABLE-i386-2.1/roots.o build/temp.freebsd-4.4-STABLE-i386-2.1/slsbt.o build/temp.freebsd-4.4-STABLE-i386-2.1/slss.o build/temp.freebsd-4.4-STABLE-i386-2.1/solbt.o build/temp.freebsd-4.4-STABLE-i386-2.1/solsy.o build/temp.freebsd-4.4-STABLE-i386-2.1/srcar.o build/temp.freebsd-4.4-STABLE-i386-2.1/srcma.o build/temp.freebsd-4.4-STABLE-i386-2.1/srcms.o build/temp.freebsd-4.4-STABLE-i386-2.1/srcom.o build/temp.freebsd-4.4-STABLE-i386-2.1/sro.o build/temp.freebsd-4.4-STABLE-i386-2.1/stoda.o build/temp.freebsd-4.4-STABLE-i386-2.1/stode.o build/temp.freebsd-4.4-STABLE-i386-2.1/stodi.o build/temp.freebsd-4.4-STABLE-i386-2.1/vmnorm.o build/temp.freebsd-4.4-STABLE-i386-2.1/vnorm.o build/temp.freebsd-4.4-STABLE-i386-2.1/xerrwv.o build/temp.freebsd-4.4-STABLE-i386-2.1/xsetf.o build/temp.freebsd-4.4-STABLE-i386-2.1/xsetun.o building 'linpack_lite' library ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/liblinpack_lite.a build/temp.freebsd-4.4-STABLE-i386-2.1/dgbfa.o build/temp.freebsd-4.4-STABLE-i386-2.1/dgbsl.o build/temp.freebsd-4.4-STABLE-i386-2.1/dgefa.o build/temp.freebsd-4.4-STABLE-i386-2.1/dgesl.o build/temp.freebsd-4.4-STABLE-i386-2.1/dgtsl.o building 'blas' library ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libblas.a build/temp.freebsd-4.4-STABLE-i386-2.1/caxpy.o build/temp.freebsd-4.4-STABLE-i386-2.1/ccopy.o build/temp.freebsd-4.4-STABLE-i386-2.1/cdotc.o build/temp.freebsd-4.4-STABLE-i386-2.1/cdotu.o build/temp.freebsd-4.4-STABLE-i386-2.1/cgbmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/cgemm.o build/temp.freebsd-4.4-STABLE-i386-2.1/cgemv.o build/temp.freebsd-4.4-STABLE-i386-2.1/cgerc.o build/temp.freebsd-4.4-STABLE-i386-2.1/cgeru.o build/temp.freebsd-4.4-STABLE-i386-2.1/chbmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/chemm.o build/temp.freebsd-4.4-STABLE-i386-2.1/chemv.o build/temp.freebsd-4.4-STABLE-i386-2.1/cher.o build/temp.freebsd-4.4-STABLE-i386-2.1/cher2.o build/temp.freebsd-4.4-STABLE-i386-2.1/cher2k.o build/temp.freebsd-4.4-STABLE-i386-2.1/cherk.o build/temp.freebsd-4.4-STABLE-i386-2.1/chpmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/chpr.o build/temp.freebsd-4.4-STABLE-i386-2.1/chpr2.o build/temp.freebsd-4.4-STABLE-i386-2.1/crotg.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libblas.a build/temp.freebsd-4.4-STABLE-i386-2.1/cscal.o build/temp.freebsd-4.4-STABLE-i386-2.1/csscal.o build/temp.freebsd-4.4-STABLE-i386-2.1/cswap.o build/temp.freebsd-4.4-STABLE-i386-2.1/csymm.o build/temp.freebsd-4.4-STABLE-i386-2.1/csyr2k.o build/temp.freebsd-4.4-STABLE-i386-2.1/csyrk.o build/temp.freebsd-4.4-STABLE-i386-2.1/ctbmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ctbsv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ctpmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ctpsv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ctrmm.o build/temp.freebsd-4.4-STABLE-i386-2.1/ctrmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ctrsm.o build/temp.freebsd-4.4-STABLE-i386-2.1/ctrsv.o build/temp.freebsd-4.4-STABLE-i386-2.1/dasum.o build/temp.freebsd-4.4-STABLE-i386-2.1/daxpy.o build/temp.freebsd-4.4-STABLE-i386-2.1/dcabs1.o build/temp.freebsd-4.4-STABLE-i386-2.1/dcopy.o build/temp.freebsd-4.4-STABLE-i386-2.1/ddot.o build/temp.freebsd-4.4-STABLE-i386-2.1/dgbmv.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libblas.a build/temp.freebsd-4.4-STABLE-i386-2.1/dgemm.o build/temp.freebsd-4.4-STABLE-i386-2.1/dgemv.o build/temp.freebsd-4.4-STABLE-i386-2.1/dger.o build/temp.freebsd-4.4-STABLE-i386-2.1/dnrm2.o build/temp.freebsd-4.4-STABLE-i386-2.1/drot.o build/temp.freebsd-4.4-STABLE-i386-2.1/drotg.o build/temp.freebsd-4.4-STABLE-i386-2.1/dsbmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/dscal.o build/temp.freebsd-4.4-STABLE-i386-2.1/dspmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/dspr.o build/temp.freebsd-4.4-STABLE-i386-2.1/dspr2.o build/temp.freebsd-4.4-STABLE-i386-2.1/dswap.o build/temp.freebsd-4.4-STABLE-i386-2.1/dsymm.o build/temp.freebsd-4.4-STABLE-i386-2.1/dsymv.o build/temp.freebsd-4.4-STABLE-i386-2.1/dsyr.o build/temp.freebsd-4.4-STABLE-i386-2.1/dsyr2.o build/temp.freebsd-4.4-STABLE-i386-2.1/dsyr2k.o build/temp.freebsd-4.4-STABLE-i386-2.1/dsyrk.o build/temp.freebsd-4.4-STABLE-i386-2.1/dtbmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/dtbsv.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libblas.a build/temp.freebsd-4.4-STABLE-i386-2.1/dtpmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/dtpsv.o build/temp.freebsd-4.4-STABLE-i386-2.1/dtrmm.o build/temp.freebsd-4.4-STABLE-i386-2.1/dtrmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/dtrsm.o build/temp.freebsd-4.4-STABLE-i386-2.1/dtrsv.o build/temp.freebsd-4.4-STABLE-i386-2.1/dzasum.o build/temp.freebsd-4.4-STABLE-i386-2.1/dznrm2.o build/temp.freebsd-4.4-STABLE-i386-2.1/icamax.o build/temp.freebsd-4.4-STABLE-i386-2.1/idamax.o build/temp.freebsd-4.4-STABLE-i386-2.1/isamax.o build/temp.freebsd-4.4-STABLE-i386-2.1/izamax.o build/temp.freebsd-4.4-STABLE-i386-2.1/lsame.o build/temp.freebsd-4.4-STABLE-i386-2.1/sasum.o build/temp.freebsd-4.4-STABLE-i386-2.1/saxpy.o build/temp.freebsd-4.4-STABLE-i386-2.1/scasum.o build/temp.freebsd-4.4-STABLE-i386-2.1/scnrm2.o build/temp.freebsd-4.4-STABLE-i386-2.1/scopy.o build/temp.freebsd-4.4-STABLE-i386-2.1/sdot.o build/temp.freebsd-4.4-STABLE-i386-2.1/sgbmv.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libblas.a build/temp.freebsd-4.4-STABLE-i386-2.1/sgemm.o build/temp.freebsd-4.4-STABLE-i386-2.1/sgemv.o build/temp.freebsd-4.4-STABLE-i386-2.1/sger.o build/temp.freebsd-4.4-STABLE-i386-2.1/snrm2.o build/temp.freebsd-4.4-STABLE-i386-2.1/srot.o build/temp.freebsd-4.4-STABLE-i386-2.1/srotg.o build/temp.freebsd-4.4-STABLE-i386-2.1/ssbmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/sscal.o build/temp.freebsd-4.4-STABLE-i386-2.1/sspmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/sspr.o build/temp.freebsd-4.4-STABLE-i386-2.1/sspr2.o build/temp.freebsd-4.4-STABLE-i386-2.1/sswap.o build/temp.freebsd-4.4-STABLE-i386-2.1/ssymm.o build/temp.freebsd-4.4-STABLE-i386-2.1/ssymv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ssyr.o build/temp.freebsd-4.4-STABLE-i386-2.1/ssyr2.o build/temp.freebsd-4.4-STABLE-i386-2.1/ssyr2k.o build/temp.freebsd-4.4-STABLE-i386-2.1/ssyrk.o build/temp.freebsd-4.4-STABLE-i386-2.1/stbmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/stbsv.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libblas.a build/temp.freebsd-4.4-STABLE-i386-2.1/stpmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/stpsv.o build/temp.freebsd-4.4-STABLE-i386-2.1/strmm.o build/temp.freebsd-4.4-STABLE-i386-2.1/strmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/strsm.o build/temp.freebsd-4.4-STABLE-i386-2.1/strsv.o build/temp.freebsd-4.4-STABLE-i386-2.1/xerbla.o build/temp.freebsd-4.4-STABLE-i386-2.1/zaxpy.o build/temp.freebsd-4.4-STABLE-i386-2.1/zcopy.o build/temp.freebsd-4.4-STABLE-i386-2.1/zdotc.o build/temp.freebsd-4.4-STABLE-i386-2.1/zdotu.o build/temp.freebsd-4.4-STABLE-i386-2.1/zdscal.o build/temp.freebsd-4.4-STABLE-i386-2.1/zgbmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/zgemm.o build/temp.freebsd-4.4-STABLE-i386-2.1/zgemv.o build/temp.freebsd-4.4-STABLE-i386-2.1/zgerc.o build/temp.freebsd-4.4-STABLE-i386-2.1/zgeru.o build/temp.freebsd-4.4-STABLE-i386-2.1/zhbmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/zhemm.o build/temp.freebsd-4.4-STABLE-i386-2.1/zhemv.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libblas.a build/temp.freebsd-4.4-STABLE-i386-2.1/zher.o build/temp.freebsd-4.4-STABLE-i386-2.1/zher2.o build/temp.freebsd-4.4-STABLE-i386-2.1/zher2k.o build/temp.freebsd-4.4-STABLE-i386-2.1/zherk.o build/temp.freebsd-4.4-STABLE-i386-2.1/zhpmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/zhpr.o build/temp.freebsd-4.4-STABLE-i386-2.1/zhpr2.o build/temp.freebsd-4.4-STABLE-i386-2.1/zrotg.o build/temp.freebsd-4.4-STABLE-i386-2.1/zscal.o build/temp.freebsd-4.4-STABLE-i386-2.1/zswap.o build/temp.freebsd-4.4-STABLE-i386-2.1/zsymm.o build/temp.freebsd-4.4-STABLE-i386-2.1/zsyr2k.o build/temp.freebsd-4.4-STABLE-i386-2.1/zsyrk.o build/temp.freebsd-4.4-STABLE-i386-2.1/ztbmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ztbsv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ztpmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ztpsv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ztrmm.o build/temp.freebsd-4.4-STABLE-i386-2.1/ztrmv.o build/temp.freebsd-4.4-STABLE-i386-2.1/ztrsm.o ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libblas.a build/temp.freebsd-4.4-STABLE-i386-2.1/ztrsv.o building 'mach' library ar -cur build/temp.freebsd-4.4-STABLE-i386-2.1/libmach.a build/temp.freebsd-4.4-STABLE-i386-2.1/d1mach.o build/temp.freebsd-4.4-STABLE-i386-2.1/i1mach.o build/temp.freebsd-4.4-STABLE-i386-2.1/r1mach.o build/temp.freebsd-4.4-STABLE-i386-2.1/xerror.o running build_ext building 'scipy.cluster._vq' extension skipping cluster/src/vq_wrap.cpp (build/temp.freebsd-4.4-STABLE-i386-2.1/vq_wrap.o up-to-date) cc -shared -pthread build/temp.freebsd-4.4-STABLE-i386-2.1/vq_wrap.o -L -Lbuild/temp.freebsd-4.4-STABLE-i386-2.1 -lamos -ltoms -lfitpack -lminpack -lquadpack -lodepack -llinpack_lite -lblas -lmach -lg2c -lgist -lc_misc -lcephes -o build/lib.freebsd-4.4-STABLE-i386-2.1/scipy/cluster/_vq.so /usr/libexec/elf/ld: cannot find -lamos error: command 'cc' failed with exit status 1 Script done on Mon Nov 5 18:31:54 2001 Sincerely, Rob. -- The Numeric Python EM Project www.members.home.net/europax

2 1

State of stats modules?
by Magnus Lyckå Nov. 5, 2001

Nov. 5, 2001

Hi, I'm a new scipy user, and I'm still a little lost... I've looked through the mailing list archeives and the web site, but I guess I might have missed some info I should have spotted... Anyway, I'll ask some questions here... I start with this one: What's the state of the stats module? Just at random, I tried the aanova function and get: Traceback (most recent call last): File "<interactive input>", line 1, in ? File "G:\Python21\scipy\stats\stats.py", line 3933, in aanova M = pstat.collapse(data,Bscols,-1,None,None,mean) TypeError: collapse() takes at most 5 arguments (6 given) collapse wants: def collapse (listoflists,keepcols,collapsecols,sterr=None,ns=None): In other words... No mean... Removing the last parameter in lines 3933, 3988 and 4372 I get a result, but I won't hang my neck out and say that it's correct (or not). Also, what happens is that the aanova function uses "print" to display the result. Fine for interactive use if I just want to see how things stand, but less amusing if I want to use the results from the anova programmatically in further computations, or for plotting or what ever. The return value from the function is None. :-( There is obviously code in ststs.py that assumes that collapse can work with other stuff than means, as it seems to do now: collapsed = pstat.collapse(M,btwcols,-1,None,len,mean) # Obviously needed for-loop to get source cell-means embedded in collapse fcns contrastmns = pstat.collapse(collapsed,btwsourcecols,-2,sterr,len,mean) # Collapse again, this time SUMMING instead of averaging (to get cell Ns) contrastns = pstat.collapse(collapsed,btwsourcecols,-1,None,None, sum) # Collapse again, this time calculating harmonicmeans (for hns) contrasthns = pstat.collapse(collapsed,btwsourcecols,-1,None,None, harmonicmean) I assume that it's the following snippet in pstat.collapse that should use the sixth parameter: if keepcols == []: means = [0]*len(collapsecols) for i in range(len(collapsecols)): avgcol = colex(listoflists,collapsecols[i]) means[i] = stats.mean(avgcol) <=== supplied function here? return means But I don't feel that I understand enough of statistics or the plan here to patch things on my own... Anyone caring for this? -- Magnus Lyckå, Thinkware AB Älvans väg 99, SE-907 50 UMEÅ tel 070-582 80 65, fax: 070-612 80 65 http://www.thinkware.se/ mailto:magnus@thinkware.se

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wxplt
by Jochen Küpper Nov. 5, 2001

Nov. 5, 2001

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Eric, ok, thinking about it a little longer, reading a little more... Take the patch I sent you and remove my copyright notice. I put that patch into PD. Greetings, Jochen PS: It just doesn't make any sense to have it unused. - -- University of North Carolina phone: +1-919-962-4403 Department of Chemistry phone: +1-919-962-1579 Venable Hall CB#3290 (Kenan C148) fax: +1-919-843-6041 Chapel Hill, NC 27599, USA GnuPG key: 44BCCD8E -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.0.6-cygwin-fcn-1 (Cygwin) Comment: Processed by Mailcrypt and GnuPG <http://www.gnupg.org/> iD8DBQE75svdiJ/aUUS8zY4RAvRLAJ0YsZ0uyePWMZhWm+6NOyw0pufvmACeJcwm FtiMwhsrTjRt2D2SjiqzOjE= =Yo3F -----END PGP SIGNATURE-----

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typos
by Jochen Küpper Nov. 2, 2001

Nov. 2, 2001

Index: io/array_import.py =================================================================== RCS file: /home/cvsroot/world/scipy/io/array_import.py,v retrieving revision 1.5 diff -u -r1.5 array_import.py --- io/array_import.py 2001/09/14 20:26:34 1.5 +++ io/array_import.py 2001/11/02 02:34:28 @@ -248,7 +248,7 @@ Outputs: - file -- The open file. + array -- The array read. """ if type(separator) in [types.StringType, type(default)]: Index: plt/wxplt.py =================================================================== RCS file: /home/cvsroot/world/scipy/plt/wxplt.py,v retrieving revision 1.8 diff -u -r1.8 wxplt.py --- plt/wxplt.py 2001/10/24 14:47:18 1.8 +++ plt/wxplt.py 2001/11/02 02:34:30 @@ -580,7 +580,7 @@ self.client.save(dlg.GetPath(),ftype) else: msg = "Extension is currently used to determine file type." \ - "'%s' is not a vaild extension." \ + "'%s' is not a valid extension." \ "You may use one of the following extensions. %s" \ % (ftype,image_type_map.keys()) d = wx.wxMessageDialog(self,msg,style=wx.wxOK) Greetings, Jochen -- Einigkeit und Recht und Freiheit http://www.Jochen-Kuepper.de Liberté, Égalité, Fraternité GnuPG key: 44BCCD8E Sex, drugs and rock-n-roll

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