Hop vs HaloProfiler
by Agarwal, Shankar
Hi,
I am a little confused as to how to use hop_circles. I tried this but it fails...
from yt.mods import *
fn = "RedshiftOutput0002"
pf = load(fn)
halos = HaloFinder(pf)
halos.modify["hop_circles"](self, hop_output, max_number=None, annotate=False, min_size=20, max_size=10000000, font_size=8, print_halo_size=False, print_halo_mass=False, width=None)
halos.write_out("HopAnalysis.out")
Also, I tried HaloProfiler using http://yt.enzotools.org/doc/cookbook/recipes.html#cookbook-run-halo-profiler. It generated the radial_profiles/ directory with Halo_xxxx_profile.dat files. I am printing here the first few lines from Halo_0000_profile.dat...
# ActualOverdensity CellVolume Density RadiusMpc Temperature TotalMassMsun myweight
2.796608e+03 9.422900e+72 1.407563e-27 1.086579e+00 4.551426e+07 3.320010e+13 3.334302e+12
1.587191e+03 1.884580e+73 3.247510e-28 1.121908e+00 3.392715e+07 3.768487e+13 7.692859e+11
1.213350e+03 3.298015e+73 8.512354e-28 1.158386e+00 3.176131e+07 5.041525e+13 2.016447e+12
9.092253e+02 5.182595e+73 7.672296e-28 1.196051e+00 3.692482e+07 5.936658e+13 1.817450e+12
Is Halo_0000_profile.dat related to the first Halo listed in HopAnalysis.out file ?
What is # ?
What is the meaning of ActualOverdensity ? And units ?
What is the meaning of CellVolume? And units ?
What is Density referring to ? And units ?
What is mywieght ?
I also got the projection/ directory. But I got errors...
yt.lagos INFO 2009-11-24 16:57:52,561 Writing filtered halo list to /usr/rmt_share/scratch95/a/agarwa23/0eV/512/box200/sim1/RD0002/FilteredQuantities.out.
yt INFO 2009-11-24 16:57:53,873 Created plot collection with default plot-center = [0.5, 0.5, 0.5]
yt.lagos INFO 2009-11-24 16:57:53,873 Projecting halo 0000 in region: [0.154949, 0.130009, 0.810277] to [0.183709, 0.158769, 0.839037].
yt INFO 2009-11-24 16:57:53,875 Generating overlap masks for level 0
Reading and masking grids 100% ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Time: 00:00:00 yt INFO 2009-11-24 16:57:53,875 Finished calculating overlap.
Projecting level 0 / 0 100% ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Time: 00:00:01 Combining level 0 / 0 100% ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Time: 00:00:00 yt INFO 2009-11-24 16:57:55,640 Level 0 done: 256 final
yt INFO 2009-11-24 16:57:55,896 Generating overlap masks for level 0
Reading and masking grids 100% ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Time: 00:00:00 yt INFO 2009-11-24 16:57:55,896 Finished calculating overlap.
Projecting level 0 / 0 100% ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Time: 00:00:01 Combining level 0 / 0 100% ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Time: 00:00:00 yt INFO 2009-11-24 16:57:57,381 Level 0 done: 256 final
yt INFO 2009-11-24 16:57:57,527 Generating overlap masks for level 0
Reading and masking grids 100% ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Time: 00:00:00 yt INFO 2009-11-24 16:57:57,527 Finished calculating overlap.
Traceback (most recent call last): | ETA: --:--:-- File "run_halo_profiler.py", line 37, in <module>
halo_list='filtered',axes=[0,1,2])
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/extensions/HaloProfiler.py", line 474, in make_projections
serialize=False, **kwargs)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/raven/PlotCollection.py", line 262, in add_projection
return self._add_projection(PlotTypes.ProjectionPlot, *args, **kwargs)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/raven/PlotCollection.py", line 285, in _add_projection
center=center, **kwargs)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseDataTypes.py", line 951, in __init__
self._refresh_data()
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseDataTypes.py", line 190, in _refresh_data
self.get_data()
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseDataTypes.py", line 1137, in get_data
my_coords, my_dx, my_fields = self.__project_level(level, fields)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseDataTypes.py", line 1029, in __project_level
g_coords, g_fields = self._project_grid(grid, fields, zero_out)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseDataTypes.py", line 1182, in _project_grid
for field in fields]
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseDataTypes.py", line 40, in save_state
tr = func(self, grid, field)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseDataTypes.py", line 1222, in _get_data_from_grid
return grid[field] * bad_points
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseDataTypes.py", line 199, in __getitem__
self.get_data(key)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseGridType.py", line 96, in get_data
self._generate_field(field)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseGridType.py", line 54, in _generate_field
self.pf.field_info[field].check_available(self)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/FieldInfoContainer.py", line 244, in check_available
validator(data)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/FieldInfoContainer.py", line 337, in __call__
raise NeedsDataField(doesnt_have)
yt.lagos.FieldInfoContainer.NeedsDataField: (['Metal_Density'])
shankar
9 years, 1 month
HaloProfiler vs sum_mass_in_sphere.py
by Agarwal, Shankar
Hi, I ran HaloProfiler on HaloAnalysis.out and here is the data for the first halo...
# id center[0] center[1] center[2] RadiusMpc TotalMassMsun
0000 0.169329105 0.144388856 0.8246570556 3.1986507886 1.07530961369e+15
Then I ran sum_mass_in_sphere.py with the above center and radius ...
from yt.mods import *
fn = "RedshiftOutput0002"
pf = load(fn)
sp = pf.h.sphere([0.169329105,0.144388856,0.8246570556],3.1986507886/pf["mpc"])
baryon_mass, particle_mass = sp.quantities["TotalQuantity"](
["CellMassMsun", "ParticleMassMsun"], lazy_reader=True)
print "Total mass in sphere is %0.5e (gas = %0.5e / particles = %0.5e)" % \
(baryon_mass + particle_mass, baryon_mass, particle_mass)
And got...
Total mass in sphere is 1.27226e+15 (gas = 2.06890e+14 / particles = 1.06537e+15)
Let me know if the TotalMassMsun should match. Because they don't.
regards
shankar
KU Cosmology
9 years, 1 month
Halos on slices
by Agarwal, Shankar
Hi, a couple of questions..
1. I did pc.add_slice("Density",0). Now, I want to plot the halos just for that slice. Is it possible to plot the Halos (from HaloAnalysis.out) slice wise ?
2. I added the Density contours on the slice like...
p.modify["contour"]("Density",ncont=4,take_log=False,clim=(1e-28,1e-30))
Here, if I am correct, the (1e-28,1e-30) range is divided into 4 equal intervals. So, would the contours be (1e-28,7.525e-29,5.05e-29, 2.575e-29, 1e-30) ? And which of these 5 will get plotted (the first 4? or the last 4?)
In any case, I have the plot here... http://drop.io/hop_circles . And it does not show any contour with 1e-29.
regards
shankar
9 years, 1 month
Is pc.add_projection("Density", ax) a valid statement ?
by Agarwal, Shankar
Hi, In the following code, I am getting an error when I use pc.add_projection("Density", ax). But If I specifically use pc.add_projection("Density", 0) then it runs fine. Any idea ?
Code...
from yt.mods import *
pf = load("RedshiftOutput0002")
pc = PlotCollection(pf)
for ax in range(3):
p = pc.add_projection("Density", ax)
p.modify["hop_circles"](halos, max_number=None, annotate=True, min_size=0, max_size=100000000, font_size=8, print_halo_size=True, print_halo_mass=True, width=None)
pc.save()
Error....
Traceback (most recent call last):
File "hop_yt.py", line 20, in <module>
p = pc.add_projection("Density", ax)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/raven/PlotCollection.py", line 262, in add_projection
return self._add_projection(PlotTypes.ProjectionPlot, *args, **kwargs)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/raven/PlotCollection.py", line 285, in _add_projection
center=center, **kwargs)
Shankar
KU cosmology
9 years, 1 month
plotting questions
by Agarwal, Shankar
Hi, I was trying the following 2 methods...
from yt.mods import *
p = plots.get_slice("RedshiftOutput0002", "Density", 0)
p.modify["grids"]()
p.modify["contour"]("Density")
p.save_image("plot1")
from yt.mods import *
pf = load("RedshiftOutput0002")
pc = PlotCollection(pf)
for ax in range(1): pc.add_slice("Density", ax).modify["grids"]()
pc.save("plot2")
I have the plots for them attached.
My simulation box is 200 Mpc/h. I wanted to know what are the default span (length scales) for the 2 methods ?
For plot 1, how can I control the spacing of contours ? And where is plot 1 centered at ?
For plot 2, it is centered at the most dense point in the box. But how can I add density contours ? Also, how to control the spacing ?
regards
shankar
KU Cosmology
9 years, 1 month
cookbook_hop_mass_sum.py
by Agarwal, Shankar
Hi,
I ran cookbook_hop_mass_sum.py and it gives me this error...
Traceback (most recent call last):
File "cookbook_hop_mass_sum.py", line 19, in <module>
sphere = halo.get_sphere()
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/HaloFinding.py", line 128, in get_sphere
center, radius=radius)
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/lagos/BaseDataTypes.py", line 1800, in __init__
raise SyntaxError("Your radius is smaller than your finest cell!")
SyntaxError: Your radius is smaller than your finest cell!
How does it matter if halo radius is smaller than finest cell ?
cookbook_hop_mass_sum.py should just spit the baryon mass, dark matter mass and total mass.
# Group Mass # part max densx y z center-of-mass x y z vx vy vz max_r
0 1.009603589e+15 3202 6.803410660e+03 2.691574395e-01 1.892197430e-01 8.293117285e-01 2.701045173e-01 1.889703433e-01 8.276973165e-01 -6.232934392e+06
-2.872425257e+07 1.526929994e+06 1.886896417e-02
shankar
9 years, 1 month
HOP threshold
by Agarwal, Shankar
Hi, I am generating Halos using HOP (via yt). I see that the default overdensity is 160. I guess it means 160 particles per cell. But isn't cell size a function of the simulation box volume and the grid ?
For example, if Box=200Mpc and Ngrid=512^3, then cell=(0.390625 Mpc)^3
Isn't 0.390625 Mpc too big for a galaxy ?
What is the calculation behind 160 ?
shankar
KU Cosmology
9 years, 1 month
run_halo_profiler.py
by Agarwal, Shankar
Hi, Is there a syntax error in the piece below I took from run_halo_profiler.py ...
"""
This is a recipe for making radial profiles and projections of all of the halos
within a cosmological simulation. See :ref:`halo_profiling` for full documentation
of the HaloProfiler.
"""
import yt.extensions.HaloProfiler as HP
# Instantiate HaloProfiler for this dataset.
hp = HP.HaloProfiler("RD0002/RedshiftOutput0002")
I get the following error...
[agarwa23@tg-steele sim1]$ python run_halo_profiler.py
yt.lagos INFO 2009-11-23 14:20:48,664 No HDF4 support
/home/ba01/u118/agarwa23/enzo1/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/IPython/Magic.py:38: DeprecationWarning: the sets module is deprecated
from sets import Set
Traceback (most recent call last):
File "run_halo_profiler.py", line 7, in <module>
import yt.extensions.HaloProfiler as HP
File "/autohome/u118/agarwa23/enzo1/src/yt/yt/extensions/HaloProfiler.py", line 30, in <module>
from HaloFilters import *
ImportError: No module named HaloFilters
shankar
9 years, 1 month
installing yt on Steele
by Agarwal, Shankar
Hi, I am trying to install yt on Steele. When I do "bash install_script.sh", it crashes with H5 warnings and libz.a error.
Any idea?
shankar
KU Cosmology
Building dependencies for H5E.c
H5E.c: in function `H5Eprint':
H5E.c:467: warning: trace info was not inserted
Building dependencies for H5F.c
H5FDmulti.c: in function `H5Pset_fapl_split':
H5FDmulti.c:291: warning: trace info was not inserted
H5FDmulti.c: in function `H5Pset_fapl_multi':
H5FDmulti.c:430: unable to parse `const char * const *memb_name'
H5FDmulti.c: in function `H5Pget_fapl_multi':
H5FDmulti.c:537: warning: trace info was not inserted
H5FDmulti.c: in function `H5Pset_dxpl_multi':
H5FDmulti.c:606: warning: trace info was not inserted
H5FDmulti.c: in function `H5Pget_dxpl_multi':
H5FDmulti.c:658: warning: trace info was not inserted
Building dependencies for H5FDstdio.c
H5FDstdio.c: in function `H5Pset_fapl_stdio':
H5FDstdio.c:272: warning: trace info was not inserted
make[1]: Leaving directory `/autohome/u118/agarwa23/enzo1/src/yt/doc/yt-x86_64/src/hdf5-1.6.8/src'
make[1]: Entering directory `/autohome/u118/agarwa23/enzo1/src/yt/doc/yt-x86_64/src/hdf5-1.6.8/src'
mkdir .libs
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c H5Dcontig.c -fPIC -DPIC -o .libs/H5Dcontig.lo
H5Dcontig.c(497): warning #556: a value of type "const H5D_dxpl_cache_t *" cannot be assigned to an entity of type "H5D_dxpl_cache_t *"
H5D_BUILD_IO_INFO(&io_info,dset,dxpl_cache,dxpl_id,store);
^
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -
H5Dio.c(3208): warning #556: a value of type "const H5D_dxpl_cache_t *" cannot be assigned to an entity of type "H5D_dxpl_cache_t *"
io_info->dxpl_cache=dxpl_cache;
^
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c H5FD.c -fPIC -DPIC -o .libs/H5FD.lo
H5FD.c(3670): warning #810: conversion from "void *" to "herr_t={int}" may lose significant bits
HGOTO_ERROR(H5E_VFL, H5E_UNSUPPORTED, NULL, "file driver has no `get_vfd_handle' method");
^
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c H5FDmulti.c -fPIC -DPIC -o .libs/H5FDmulti.lo
H5FDmulti.c(208): warning #266: function "strlen" declared implicitly
if (NULL==(x=malloc(strlen(s)+1))) return NULL;
^
H5FDmulti.c(208): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
if (NULL==(x=malloc(strlen(s)+1))) return NULL;
^
H5FDmulti.c(209): warning #266: function "strcpy" declared implicitly
strcpy(x, s);
^
H5FDmulti.c(209): warning #167: argument of type "const char *" is incompatible with parameter of type "void *"
strcpy(x, s);
^
H5FDmulti.c(1924): warning #266: function "memset" declared implicitly
UNIQUE_MEMBERS(file->fa.memb_map, mt) {
^
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c H5FDstdio.c -fPIC -DPIC -o .libs/H5FDstdio.lo
H5FDstdio.c(774): warning #266: function "memset" declared implicitly
memset(buf, 0, size);
^
H5FDstdio.c(800): warning #266: function "memset" declared implicitly
memset((unsigned char *)buf + size - nbytes, 0, nbytes);
^
H5FDstdio.c(815): warning #266: function "memset" declared implicitly
memset((unsigned char *)buf + n, 0, (size - n));
^
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c H5Gnode.c -fPIC -DPIC -o .libs/H5Gnode.lo
H5Gnode.c(1671): warning #188: enumerated type mixed with another type
udata->type = H5G_get_type(&(sn->entry[loc_idx]), dxpl_id);
^
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c H5Gstab.c -fPIC -DPIC -o .libs/H5Gstab.lo
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c H5Obogus.c -fPIC -DPIC -o .libs/H5Obogus.lo
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c H5Spoint.c -fPIC -DPIC -o .libs/H5Spoint.lo
H5Spoint.c(879): warning #167: argument of type "const hsize_t={unsigned long long} **" is incompatible with parameter of type "const hsize_t={unsigned long long} *"
if((ret_value=H5S_select_elements(space,op,num_elem,(const hsize_t **)coord))<0)
^
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c H5Spoint.c -o H5Spoint.o >/dev/null 2>&1
mv -f .libs/H5Spoint.lo H5Spoint.lo
rm -f .libs/H5Sselect.lo
mpicc -std=c99 -O3 -Wl,-s -I. -I. -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c H5Sselec
mv -f .libs/H5Zszip.lo H5Zszip.lo
rm -fr .libs/libhdf5.la .libs/libhdf5.* .libs/libhdf5.*
mpicc -shared H5.lo H5A.lo H5AC.lo H5B.lo H5Bcache.lo H5C.lo H5D.lo H5Dcontig.lo H5Dcompact.lo H5Defl.lo H5Dio.lo H5Distore.lo H5Dmpio.lo H5Dselect.lo H5Dtest.lo H5E.lo H5F.lo H5Fdbg.lo H5Fmount.lo H5Fsfile.lo H5Fsuper.lo H5FD.lo H5FDcore.lo H5FDfamily.lo H5FDlog.lo H5FDmpi.lo H5FDmpio.lo H5FDmpiposix.lo H5FDmulti.lo H5FDsec2.lo H5FDstdio.lo H5FL.lo H5FO.lo H5FS.lo H5G.lo H5Gent.lo H5Gname.lo H5Gnode.lo H5Gstab.lo H5Gtest.lo H5Gtraverse.lo H5HG.lo H5HGdbg.lo H5HL.lo H5HLdbg.lo H5HP.lo H5I.lo H5MF.lo H5MM.lo H5O.lo H5Oattr.lo H5Obogus.lo H5Ocache.lo H5Ocont.lo H5Odtype.lo H5Oefl.lo H5Ofill.lo H5Olayout.lo H5Omtime.lo H5Oname.lo H5Onull.lo H5Opline.lo H5Osdspace.lo H5Oshared.lo H5Ostab.lo H5P.lo H5Pdcpl.lo H5Pdxpl.lo H5Pfapl.lo H5Pfcpl.lo H5Ptest.lo H5R.lo H5RC.lo H5RS.lo H5S.lo H5Sall.lo H5Shyper.lo H5Smpio.lo H5Snone.lo H5Spoint.lo H5Sselect.lo H5Stest.lo H5SL.lo H5ST.lo H5T.lo H5Tarray.lo H5Tbit.lo H5Tcommit.lo H5Tcompound.lo H5Tconv.lo H5Tcset.lo H5Tenum.lo H5Tfields.lo H5Tfixed.lo H5Tfloat.lo H5Tinit.lo H5Tnative.lo H5Toffset.lo H5Topaque.lo H5Torder.lo H5Tpad.lo H5Tprecis.lo H5Tstrpad.lo H5Tvlen.lo H5TS.lo H5V.lo H5Z.lo H5Zdeflate.lo H5Zfletcher32.lo H5Zshuffle.lo H5Zszip.lo -Wl,--rpath -Wl,/home/ba01/u118/agarwa23/enzo1/src/yt/doc/yt-x86_64/lib64/ -Wl,--rpath -Wl,/home/ba01/u118/agarwa23/enzo1/src/yt/doc/yt-x86_64/lib/ -L/home/ba01/u118/agarwa23/enzo1/src/yt/doc/yt-x86_64/lib/ -L/home/ba01/u118/agarwa23/enzo1/src/yt/doc/yt-x86_64/lib64/ -lz -lm -Wl,-s -Wl,-soname -Wl,libhdf5.so.0 -o .libs/libhdf5.so.0.0.0
ld: /home/ba01/u118/agarwa23/enzo1/src/yt/doc/yt-x86_64/lib//libz.a(compress.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC
/home/ba01/u118/agarwa23/enzo1/src/yt/doc/yt-x86_64/lib//libz.a: could not read symbols: Bad value
make[1]: *** [libhdf5.la] Error 1
make[1]: Leaving directory `/autohome/u118/agarwa23/enzo1/src/yt/doc/yt-x86_64/src/hdf5-1.6.8/src'
make: *** [install] Error 1
9 years, 2 months
