Hi,
I am trying to build yt on the new analysis machine at NICS, called Verne. I am using the PE-gnu environment, and I set export CC=cc;export CXX=CC, like on Kraken. During the numpy step, I am getting the error below. It's confusing because it doesn't like any of the libraries here, including libm, but I can see from the yt_install.log that it's linked to -lm before without complaining. Thoughts?
Thanks!
building 'numpy.linalg.lapack_lite' extension
compiling C sources
C compiler: cc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.6/numpy/linalg
compile options: '-DNO_ATLAS_INFO=1 -Inumpy/core/include -Ibuild/src.linux-x86_64-2.6/numpy/core/include/numpy -Inumpy/core/src -Inumpy/core/include -I/nics/c/home/sskory/yt-verne/include/python2.6 -c'
cc: numpy/linalg/python_xerbla.c
cc: numpy/linalg/lapack_litemodule.c
/usr/bin/gfortran -Wall -L/nics/c/home/sskory/yt-verne/lib/ -L/nics/c/home/sskory/yt-verne/lib64/ build/temp.linux-x86_64-2.6/numpy/linalg/lapack_litemodule.o build/temp.linux-x86_64-2.6/numpy/linalg/python_xerbla.o -L/usr/lib -llapack -lblas -lgfortran -o build/lib.linux-x86_64-2.6/numpy/linalg/lapack_lite.so
/usr/bin/ld: skipping incompatible /usr/lib/liblapack.so when searching for -llapack
/usr/bin/ld: skipping incompatible /usr/lib/liblapack.a when searching for -llapack
/usr/bin/ld: skipping incompatible /usr/lib/libblas.so when searching for -lblas
/usr/bin/ld: skipping incompatible /usr/lib/libblas.a when searching for -lblas
/usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
/usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
_______________________________________________________
sskory(a)physics.ucsd.edu o__ Stephen Skory
http://physics.ucsd.edu/~sskory/ _.>/ _Graduate Student
________________________________(_)_\(_)_______________
Hi--
I'm trying to put yt on my 10.4 power pc laptop (Methuselah). I did:
svn export http://svn.enzotools.org/yt/trunk/doc/install_script.sh
DEST_DIR=$HOME/local
bash install_script.sh
I then get the error below Any thoughts?
Thanks,
d.
Installing into /Users/dcollins/local
INST_WXPYTHON=0
Downloading HDF5
Downloading hdf5-1.6.8.tar.gz from yt.enzotools.org
Downloading zlib-1.2.3.tar.bz2 from yt.enzotools.org
Downloading Python-2.6.1.tgz from yt.enzotools.org
Downloading numpy-1.2.1.tar.gz from yt.enzotools.org
Downloading matplotlib-0.98.5.2.tar.gz from yt.enzotools.org
Downloading ipython-0.9.1.tar.gz from yt.enzotools.org
Downloading tables-2.1.tar.gz from yt.enzotools.org
Setting YT_DIR=/Users/dcollins/local/src/yt-trunk-svn/
Installing setuptools
Failure. Check /Users/dcollins/local/yt_install.log.
%> cat /Users/dcollins/local/yt_install.log
Traceback (most recent call last):
File "/Users/dcollins/local/src/yt-trunk-svn//ez_setup.py", line
269, in <module>
main(sys.argv[1:])
File "/Users/dcollins/local/src/yt-trunk-svn//ez_setup.py", line 201, in main
egg = download_setuptools(version, delay=0)
File "/Users/dcollins/local/src/yt-trunk-svn//ez_setup.py", line
123, in download_setuptools
import urllib2, shutil
File "/Users/dcollins/local//lib/python2.6/urllib2.py", line 92, in <module>
import httplib
File "/Users/dcollins/local//lib/python2.6/httplib.py", line 77, in <module>
import mimetools
File "/Users/dcollins/local//lib/python2.6/mimetools.py", line 6, in <module>
import tempfile
File "/Users/dcollins/local//lib/python2.6/tempfile.py", line 34, in <module>
from random import Random as _Random
File "/Users/dcollins/local//lib/python2.6/random.py", line 871, in <module>
_inst = Random()
File "/Users/dcollins/local//lib/python2.6/random.py", line 96, in __init__
self.seed(x)
File "/Users/dcollins/local//lib/python2.6/random.py", line 115, in seed
super(Random, self).seed(a)
SystemError: error return without exception set
