Hi,
I am trying to run yt scripts on a computing cluster that uses condor.
I have installed yt and successfully run scripts from the command line,
but I get an error when I try to submit scripts to the cluster. I think
the problem lies in how I submit the script through condor, however, I
am trying to get a better understanding of the python error to help me
figure it out. I was hoping you yt/python folks could give me some
insight.
The script I'm testing out is the one that does a simple radial profile,
I copied it from the wiki:
from yt.mods import * # set up our namespace
fn= "output_0064" # parameter file to load
pf = load(fn) # load data
pc = PlotCollection(pf) # defaults to center at most dense point
pc.add_profile_sphere(50.0, "kpc", # how many of which unit at pc.center
["RadiusMpc", "Density"], weight="CellMassMsun", # x, y, weight
x_bounds = (1e-3, 10.0)) # cut out zero-radius and tiny-radius
cells
# But ... weight defaults to CellMassMsun, so we're being redundant
here!
pc.save(fn) # save all plots
I get this error:
Traceback (most recent call last):
File "simple_radial_profile.py", line 3, in <module>
from yt.mods import * # set up our namespace
File
"/hmt/sardine/hpc/scratch/astro/users/cms2166/yt/src/yt-1.5/yt/mods.py",
line 32, in <module>
import yt.lagos as lagos
File
"/hmt/sardine/hpc/scratch/astro/users/cms2166/yt/src/yt-1.5/yt/lagos/__init__.py", line 29, in <module>
from yt.config import ytcfg
File
"/hmt/sardine/hpc/scratch/astro/users/cms2166/yt/src/yt-1.5/yt/config.py", line 33, in <module>
'RunDir': os.path.join(os.getenv("HOME"),'.yt/EnzoRuns/'),
File
"/hmt/sardine/hpc/scratch/astro/users/cms2166/yt///lib/python2.6/posixpath.py", line 67, in join
elif path == '' or path.endswith('/'):
AttributeError: 'NoneType' object has no attribute 'endswith'
The problem is with the line that imports the yt module, but I'm not
sure exactly what the issue is. I thought that maybe it was an issue
with not finding PYTHONPATH, but I'm not sure.
If anyone has any ideas about this error, I'd appreciate them.
Thanks
Christine Simpson
