Mailman 3 March 2013 - yt-users

Porting .ply files to Blender with colors?
by Jill P. Naiman Aug. 14, 2022

Aug. 14, 2022

Hi All, I was curious if anyone has had any luck porting .ply files generated with yt into Blender with colors? It seems to port in the surfaces just fine, but they are a uniform color. From what I can gather, Blender imports .ply files with face color instead of vertex so I tried the surf.export_ply routine with "face" instead of "vertex" for sample_type, but no luck ("vertex" doesn't work either). Let me know if I can provide any more useful info. Thanks for any help, -J

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Stars on volume rendering
by Elizabeth Harper-Clark Dec. 11, 2021

Dec. 11, 2021

Hi all, Thanks for all your help over the last couple of days. One more question: - Can I plot particles on a volume rendered image? I have stars and I want to show where they are! Thanks, Libby -- Elizabeth Harper-Clark MA MSci PhD Candidate, Canadian Institute for Theoretical Astrophysics, UofT Sciences and Engineering Coordinator, Teaching Assistants' Training Program, UofT www.astro.utoronto.ca/~h-clark <http://www.astro.utoronto.ca/%7Eh-clark> h-clark(a)cita.utoronto.ca Astronomy office phone: +1-416-978-5759

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Variance in phase/profiles
by david collins April 11, 2020

April 11, 2020

Hi, Everybody! Does anyone out there have a technique for getting the variance out of a profile object? A profile object is good at getting <X> vs. B, I'd then like to get < (X - <X>)^2 > vs B. Matt and I had spittballed the possibility some time ago, but I was wondering if anyone out there had successfully done it. Thanks, d. -- Sent from my computer.

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yt volume render/AMRKDtree help
by Renyue Cen Aug. 25, 2013

Aug. 25, 2013

Hi, I did some simple volume rendering with the following script: volume2 = AMRKDTree(pf, fields=["Dark_Matter_Density"], no_ghost=False, tree_type="domain", le=c-0.5*WW, re=c+0.5*WW) cam = pf.h.camera(c, L, W, N, tf, volume=volume2, no_ghost=False, north_vector=L, steady_north=True) cam.snapshot(fn="%s_iso-DMdensity-%3.3d.png" % (filenameTHIS, j)) I got rather strange results in that the pictures look symmetric, which I am pretty sure can not be true. I attach the obtained plot. Note that I am using KD tree and using 32 cores. Your help at your earliest convenience is appreciated. Best, Renyue

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Release of yt-2.5.1
by Matthew Turk March 30, 2013

March 30, 2013

Hi all, We're proud to release yt version 2.5.1. This is a scheduled point release that includes all bug fixes identified and fixed since the release of 2.5 on March 1. Major changes include: * The addition of a frontend for the Pluto code (Andrew Myers) * The addition of an OBJ exporter to enable transparent and multi-surface exports of surfaces to Blender and Sketchfab (Jill Naiman) There have also been a number of minor bugs fixed in this release. Some highlights: * load_uniform_grid can now decompose dims >= 1024. (#537) * Axis unit setting works correctly for unit names (#534) * ThermalEnergy is now calculated correctly for Enzo MHD simulations (#535) * Radius fields had an asymmetry in periodicity calculation (#531) * Boolean regions can now be pickled (#517) If you are using the stable branch of yt from an installation script, you can upgrade using "yt update". If you are using the development branch, you may already have these fixes. An installation-ready tarball with generated C code (i.e., no Cython) has been uploaded to the Python Package Index (PyPI). Thanks very much, Matt, on behalf of the yt development team

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non-converted fields?
by David Collins March 28, 2013

March 28, 2013

Hi! Is there a way to get yt to not convert data to CGS? I'm doing some debugging, and its easier to see the code units. I had a work around for this a while ago, but there has been a bunch of code development since then. Thanks! d.

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can I install yt on my laptop
by Reju Sam John March 27, 2013

March 27, 2013

Dear all, I am a starter in YT. Now I am not in a position to access our cluster computer. I would like to know is it possible to install the yt in my laptop pc. Specifications - 3rd Gen 1.7 GHz Intel Core i5 Processor, 4 GB RAM, 500GB Hard dick, 2GB Graphic Memory, AMD Mobility Radeon 7670M HD Graphic Processor, And OS is Ubuntu 12.04 If yes what are the prerequisite? Please help me. Yours, Reju Sam John -- Reju Sam John

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color algae
by Jun-Hwan Choi March 26, 2013

March 26, 2013

Hi yt user, I try to generate the projection plot with plot_modification from yt HUB. In example_image_script.py, I try to use color map "algae", it is not exist, becuase the algae is the yt built in color. Is ther any way, I can import the yt color map "algae"? I try to use "from yt.visualization.color_maps import raven_colormaps", nut the ravens_colormaps is not exist. I am using yt 2.4. Thank you in advance, Junhwan -- -------------------------------------------------------------- Jun-Hwan Choi, Ph.D. Department of Physics and Astronomy, University of Kentucky Tel: (859) 897-6737 Fax: (859) 323-2846 Email: jhchoi(a)pa.uky.edu URL: http://www.pa.uky.edu/~jhchoi --------------------------------------------------------------

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Fonts size in the Projection plot.
by Jun-Hwan Choi March 26, 2013

March 26, 2013

Hi yt user, I make a very simple projection plot using following script: ========== from yt.mods import * # Load the dataset. pf = load("../RunDM1/DD0134/DD0134") center = na.array([0.5,0.5,0.5,]) # Making slice slc = ProjectionPlot(pf, 2,'Density', center,(100, 'pc') , 'Density') slc.annotate_text((-45,42.5), "a)", data_coords=False) slc.save("Run1") ========== It generate plot with x, y, z labels and ticks as well text "a)" I would like to increase the font size of label, ticks, and text. I also change the color of the text. I think it is very basic operation, but I can not find the way. Can anyone help me? Thanks in advance, Junhwan -- -------------------------------------------------------------- Jun-Hwan Choi, Ph.D. Department of Physics and Astronomy, University of Kentucky Tel: (859) 897-6737 Fax: (859) 323-2846 Email: jhchoi(a)pa.uky.edu URL: http://www.pa.uky.edu/~jhchoi --------------------------------------------------------------

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Visualisation problems
by Elizabeth Tasker March 25, 2013

March 25, 2013

Hey, I have two question about visualisation options: (1) Is there a way of changing the colour of the contour, when it's used as a plot modification? I've tried: p.modify['contour']('NumberDensity', ncont=1, clim=[90,110], plot_args=dict(color='white', linewidths=3)) But no matter what I set 'color' all I get is purple! (2) When yt is used to create a grid of images via: p = pc.add_projection("Density", 2, center=na.array([x[i],y[i],16.]), figure=fig, axes=axes[0][i], use_colorbar=False) is there a way to add a space or a thicker border between the images? Currently, the images are quite dark and the border is black, so they run into each other a bit. Thanks! Elizabeth

2 1

reloading pf does not reflect changes in the hierarchy
by j s oishi March 20, 2013

March 20, 2013

Hi all, I'm not sure this is the proper use case, but I've noticed that if, using the iPython notebook you do pf = load("DD0000/DD0000") and then recreate DD0000 with a different hierarchy, when you rerun the load cell, the pf does not change its hierarchy. I don't know if this is an intentional behavior, or if I'm doing something wrong. Restarting the ipython notebook kernel fixes the problem. If the hierarchy stays the same but the data changes, this seems to work just fine. I'm trying to debug intial conditions, hence the repeated loading of a rapidly changing pf. Is this something we could fix? Or is it by design? If we're moving increasingly toward iPython notebooks, I would imagine reloading a pf as a fairly common use case. j

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yt install error
by Akhil langer March 18, 2013

March 18, 2013

I am getting some errors while trying to install yt on ubuntu. Os info: Linux ubuntu 3.2.0-32-generic-pae #51-Ubuntu SMP Wed Sep 26 21:54:23 UTC 2012 i686 i686 i386 GNU/Linux I did install the libs on my machine that the install_script.sh suggested. Please find below the install logs. xray_emissivity.h5: OK hdf5-1.8.9.tar.gz: OK zlib-1.2.3.tar.bz2: OK bzip2-1.0.5.tar.gz: OK libpng-1.5.12.tar.gz: OK freetype-2.4.4.tar.gz: OK sqlite-autoconf-3070500.tar.gz: OK zeromq-2.2.0.tar.gz: OK pyzmq-2.1.11.tar.gz: OK tornado-2.2.tar.gz: OK Python-2.7.3.tgz: OK numpy-1.6.1.tar.gz: OK matplotlib-1.2.0.tar.gz: OK ipython-0.13.1.tar.gz: OK h5py-2.1.0.tar.gz: OK Cython-0.17.1.tar.gz: OK reason-js-20120623.zip: OK Forthon-0.8.10.tar.gz: OK nose-1.2.1.tar.gz: OK python-hglib-0.2.tar.gz: OK sympy-0.7.2.tar.gz: OK rockstar-0.99.6.tar.gz: OK If compilation produces errors, or a large number of warnings, please read README.COMPILATION.PROBLEMS -- you might be able to adjust the flags in this Makefile to improve matters. Also in README.COMPILATION.PROBLEMS are some hints that may help if your build produces an executable which is unable to correctly handle so-called 'large files' -- files of size 2GB or more. gcc -fPIC -c blocksort.c gcc -fPIC -c huffman.c gcc -fPIC -c crctable.c gcc -fPIC -c randtable.c gcc -fPIC -c compress.c gcc -fPIC -c decompress.c gcc -fPIC -c bzlib.c rm -f libbz2.a ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o ranlib libbz2.a gcc -fPIC -c bzip2.c gcc -fPIC -fPIC -o bzip2 bzip2.o -L. -lbz2 gcc -fPIC -c bzip2recover.c gcc -fPIC -fPIC -o bzip2recover bzip2recover.o if ( test ! -d /home/alanger/workspace/softwares/yt-i686/bin ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/bin ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/lib ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/lib ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/man ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/man ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/man/man1 ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/man/man1 ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/include ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/include ; fi cp -f bzip2 /home/alanger/workspace/softwares/yt-i686/bin/bzip2 cp -f bzip2 /home/alanger/workspace/softwares/yt-i686/bin/bunzip2 cp -f bzip2 /home/alanger/workspace/softwares/yt-i686/bin/bzcat cp -f bzip2recover /home/alanger/workspace/softwares/yt-i686/bin/bzip2recover chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzip2 chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bunzip2 chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzcat chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzip2recover cp -f bzip2.1 /home/alanger/workspace/softwares/yt-i686/man/man1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzip2.1 cp -f bzlib.h /home/alanger/workspace/softwares/yt-i686/include chmod a+r /home/alanger/workspace/softwares/yt-i686/include/bzlib.h cp -f libbz2.a /home/alanger/workspace/softwares/yt-i686/lib chmod a+r /home/alanger/workspace/softwares/yt-i686/lib/libbz2.a cp -f bzgrep /home/alanger/workspace/softwares/yt-i686/bin/bzgrep ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzgrep /home/alanger/workspace/softwares/yt-i686/bin/bzegrep ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzgrep /home/alanger/workspace/softwares/yt-i686/bin/bzfgrep chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzgrep cp -f bzmore /home/alanger/workspace/softwares/yt-i686/bin/bzmore ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzmore /home/alanger/workspace/softwares/yt-i686/bin/bzless chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzmore cp -f bzdiff /home/alanger/workspace/softwares/yt-i686/bin/bzdiff ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzdiff /home/alanger/workspace/softwares/yt-i686/bin/bzcmp chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzdiff cp -f bzgrep.1 bzmore.1 bzdiff.1 /home/alanger/workspace/softwares/yt-i686/man/man1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzgrep.1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzmore.1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzdiff.1 echo ".so man1/bzgrep.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzegrep.1 echo ".so man1/bzgrep.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzfgrep.1 echo ".so man1/bzmore.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzless.1 echo ".so man1/bzdiff.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzcmp.1 gcc -shared -Wl,-soname -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o gcc -fPIC -o bzip2-shared bzip2.c libbz2.so.1.0.4 rm -f libbz2.so.1.0 ln -s libbz2.so.1.0.4 libbz2.so.1.0 `libbz2.so.1.0.4' -> `/home/alanger/workspace/softwares/yt-i686/lib/libbz2.so.1.0.4' Checking for gcc... Checking for shared library support... Building shared library libz.so.1.2.3 with gcc. Checking for unistd.h... Yes. Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf() Checking for vsnprintf() in stdio.h... Yes. Checking for return value of vsnprintf()... Yes. Checking for errno.h... Yes. Checking for mmap support... Yes. gcc -fPIC -O3 -DUSE_MMAP -c -o adler32.o adler32.c gcc -fPIC -O3 -DUSE_MMAP -c -o compress.o compress.c gcc -fPIC -O3 -DUSE_MMAP -c -o crc32.o crc32.c gcc -fPIC -O3 -DUSE_MMAP -c -o gzio.o gzio.c gcc -fPIC -O3 -DUSE_MMAP -c -o uncompr.o uncompr.c gcc -fPIC -O3 -DUSE_MMAP -c -o deflate.o deflate.c gcc -fPIC -O3 -DUSE_MMAP -c -o trees.o trees.c gcc -fPIC -O3 -DUSE_MMAP -c -o zutil.o zutil.c gcc -fPIC -O3 -DUSE_MMAP -c -o inflate.o inflate.c gcc -fPIC -O3 -DUSE_MMAP -c -o infback.o infback.c gcc -fPIC -O3 -DUSE_MMAP -c -o inftrees.o inftrees.c gcc -fPIC -O3 -DUSE_MMAP -c -o inffast.o inffast.c gcc -shared -Wl,-soname,libz.so.1 -o libz.so.1.2.3 adler32.o compress.o crc32.o gzio.o uncompr.o deflate.o trees.o zutil.o inflate.o infback.o inftrees.o inffast.o rm -f libz.so libz.so.1 ln -s libz.so.1.2.3 libz.so ln -s libz.so.1.2.3 libz.so.1 cp zlib.h zconf.h /home/alanger/workspace/softwares/yt-i686//include chmod 644 /home/alanger/workspace/softwares/yt-i686//include/zlib.h /home/alanger/workspace/softwares/yt-i686//include/zconf.h cp libz.so.1.2.3 /home/alanger/workspace/softwares/yt-i686//lib cd /home/alanger/workspace/softwares/yt-i686//lib; chmod 755 libz.so.1.2.3 cd /home/alanger/workspace/softwares/yt-i686//lib; if test -f libz.so.1.2.3; then \ rm -f libz.so libz.so.1; \ ln -s libz.so.1.2.3 libz.so; \ ln -s libz.so.1.2.3 libz.so.1; \ (ldconfig || true) >/dev/null 2>&1; \ fi cp zlib.3 /home/alanger/workspace/softwares/yt-i686//share/man/man3 chmod 644 /home/alanger/workspace/softwares/yt-i686//share/man/man3/zlib.3 rm -f *.o *~ example minigzip \ libz.* foo.gz so_locations \ _match.s maketree contrib/infback9/*.o checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... 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BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a C preprocessor that does not parse its input... gcc -E checking for ANSI C header files... (cached) yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for C/C++ restrict keyword... __restrict checking for working strtod... yes checking for memset... yes checking for pow... no checking for pow in -lm... yes checking for zlibVersion in -lz... yes checking for feenableexcept in -lm... yes checking for feenableexcept... yes checking if using Solaris linker... no checking if libraries can be versioned... yes checking for symbol prefix... configure: pkgconfig directory is ${libdir}/pkgconfig configure: creating ./config.status config.status: creating Makefile config.status: creating libpng.pc config.status: creating libpng-config config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands rm -f pnglibconf.dfn dfn?.out gawk -f ./scripts/options.awk out=dfn1.out version=search\ ./pngconf.h ./scripts/pnglibconf.dfa\ ./pngusr.dfa 1>&2 gawk -f ./scripts/options.awk out=dfn2.out dfn1.out 1>&2 rm dfn1.out mv dfn2.out pnglibconf.dfn rm -f pnglibconf.out dfn.c dfn?.out test -d scripts || mkdir scripts echo '#include "pnglibconf.dfn"' >dfn.c gcc -E -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG\ -I/home/alanger/workspace/softwares/yt-i686/include -DPNGLIB_LIBNAME='PNG15_0' -DPNGLIB_VERSION='1.5.12' -DSYMBOL_PREFIX='' -DPNG_NO_USE_READ_MACROS -DPNG_BUILDING_SYMBOL_TABLE dfn.c > dfn1.out /bin/sed -n -e 's|^.*PNG_DEFN_MAGIC *-$.*$- *PNG_DEFN_END.*$|\1|p'\ dfn1.out >dfn2.out /bin/sed -e 's| *PNG_JOIN *||g' -e 's| *$||' dfn2.out >dfn3.out rm -f dfn.c dfn[12].out mv dfn3.out pnglibconf.out rm -f pnglibconf.h cp pnglibconf.out pnglibconf.h /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c -o libpng15_la-png.lo `test -f 'png.c' || echo './'`png.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c png.c -fPIC -DPIC -o .libs/libpng15_la-png.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c png.c -o libpng15_la-png.o >/dev/null 2>&1 mv -f .deps/libpng15_la-png.Tpo .deps/libpng15_la-png.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c -o libpng15_la-pngerror.lo `test -f 'pngerror.c' || echo './'`pngerror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c pngerror.c -fPIC -DPIC -o .libs/libpng15_la-pngerror.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c pngerror.c -o libpng15_la-pngerror.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngerror.Tpo .deps/libpng15_la-pngerror.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. 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.deps/libpng15_la-pngget.Tpo .deps/libpng15_la-pngget.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c -o libpng15_la-pngmem.lo `test -f 'pngmem.c' || echo './'`pngmem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c pngmem.c -fPIC -DPIC -o .libs/libpng15_la-pngmem.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c pngmem.c -o libpng15_la-pngmem.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngmem.Tpo .deps/libpng15_la-pngmem.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c -o libpng15_la-pngpread.lo `test -f 'pngpread.c' || echo './'`pngpread.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c pngpread.c -fPIC -DPIC -o .libs/libpng15_la-pngpread.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c pngpread.c -o libpng15_la-pngpread.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngpread.Tpo .deps/libpng15_la-pngpread.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c -o libpng15_la-pngread.lo `test -f 'pngread.c' || echo './'`pngread.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c pngread.c -fPIC -DPIC -o .libs/libpng15_la-pngread.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c pngread.c -o libpng15_la-pngread.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngread.Tpo .deps/libpng15_la-pngread.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c -o libpng15_la-pngrio.lo `test -f 'pngrio.c' || echo './'`pngrio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c pngrio.c -fPIC -DPIC -o .libs/libpng15_la-pngrio.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c pngrio.c -o libpng15_la-pngrio.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngrio.Tpo .deps/libpng15_la-pngrio.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c -o libpng15_la-pngrtran.lo `test -f 'pngrtran.c' || echo './'`pngrtran.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c pngrtran.c -fPIC -DPIC -o .libs/libpng15_la-pngrtran.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c pngrtran.c -o libpng15_la-pngrtran.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngrtran.Tpo .deps/libpng15_la-pngrtran.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c -o libpng15_la-pngrutil.lo `test -f 'pngrutil.c' || echo './'`pngrutil.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c pngrutil.c -fPIC -DPIC -o .libs/libpng15_la-pngrutil.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c pngrutil.c -o libpng15_la-pngrutil.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngrutil.Tpo .deps/libpng15_la-pngrutil.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c -o libpng15_la-pngset.lo `test -f 'pngset.c' || echo './'`pngset.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c pngset.c -fPIC -DPIC -o .libs/libpng15_la-pngset.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c pngset.c -o libpng15_la-pngset.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngset.Tpo .deps/libpng15_la-pngset.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c -o libpng15_la-pngtrans.lo `test -f 'pngtrans.c' || echo './'`pngtrans.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c pngtrans.c -fPIC -DPIC -o .libs/libpng15_la-pngtrans.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c pngtrans.c -o libpng15_la-pngtrans.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngtrans.Tpo .deps/libpng15_la-pngtrans.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c -o libpng15_la-pngwio.lo `test -f 'pngwio.c' || echo './'`pngwio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c pngwio.c -fPIC -DPIC -o .libs/libpng15_la-pngwio.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c pngwio.c -o libpng15_la-pngwio.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwio.Tpo .deps/libpng15_la-pngwio.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c -o libpng15_la-pngwrite.lo `test -f 'pngwrite.c' || echo './'`pngwrite.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c pngwrite.c -fPIC -DPIC -o .libs/libpng15_la-pngwrite.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c pngwrite.c -o libpng15_la-pngwrite.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwrite.Tpo .deps/libpng15_la-pngwrite.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c -o libpng15_la-pngwtran.lo `test -f 'pngwtran.c' || echo './'`pngwtran.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c pngwtran.c -fPIC -DPIC -o .libs/libpng15_la-pngwtran.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c pngwtran.c -o libpng15_la-pngwtran.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwtran.Tpo .deps/libpng15_la-pngwtran.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c -o libpng15_la-pngwutil.lo `test -f 'pngwutil.c' || echo './'`pngwutil.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c pngwutil.c -fPIC -DPIC -o .libs/libpng15_la-pngwutil.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c pngwutil.c -o libpng15_la-pngwutil.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwutil.Tpo .deps/libpng15_la-pngwutil.Plo rm -f scripts/vers.out dfn.c dfn?.out test -d scripts || mkdir scripts echo '#include "scripts/vers.dfn"' >dfn.c gcc -E -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG\ -I/home/alanger/workspace/softwares/yt-i686/include -DPNGLIB_LIBNAME='PNG15_0' -DPNGLIB_VERSION='1.5.12' -DSYMBOL_PREFIX='' -DPNG_NO_USE_READ_MACROS -DPNG_BUILDING_SYMBOL_TABLE dfn.c > dfn1.out /bin/sed -n -e 's|^.*PNG_DEFN_MAGIC *-$.*$- *PNG_DEFN_END.*$|\1|p'\ dfn1.out >dfn2.out /bin/sed -e 's| *PNG_JOIN *||g' -e 's| *$||' dfn2.out >dfn3.out rm -f dfn.c dfn[12].out mv dfn3.out scripts/vers.out rm -f libpng.vers cp scripts/vers.out libpng.vers /bin/bash ./libtool --tag=CC --mode=link gcc -I/home/alanger/workspace/softwares/yt-i686/include -no-undefined -export-dynamic -version-number 15:12:0 -Wl,--version-script=libpng.vers -L/home/alanger/workspace/softwares/yt-i686/lib/ -L/home/alanger/workspace/softwares/yt-i686/lib64/ -L/home/alanger/workspace/softwares/yt-i686/lib/ -L/home/alanger/workspace/softwares/yt-i686/lib64/ -o libpng15.la -rpath /home/alanger/workspace/softwares/yt-i686/lib libpng15_la-png.lo libpng15_la-pngerror.lo libpng15_la-pngget.lo libpng15_la-pngmem.lo libpng15_la-pngpread.lo libpng15_la-pngread.lo libpng15_la-pngrio.lo libpng15_la-pngrtran.lo libpng15_la-pngrutil.lo libpng15_la-pngset.lo libpng15_la-pngtrans.lo libpng15_la-pngwio.lo libpng15_la-pngwrite.lo libpng15_la-pngwtran.lo libpng15_la-pngwutil.lo -lm -lz -lm libtool: link: gcc -shared -fPIC -DPIC .libs/libpng15_la-png.o .libs/libpng15_la-pngerror.o .libs/libpng15_la-pngget.o .libs/libpng15_la-pngmem.o .libs/libpng15_la-pngpread.o .libs/libpng15_la-pngread.o .libs/libpng15_la-pngrio.o .libs/libpng15_la-pngrtran.o .libs/libpng15_la-pngrutil.o .libs/libpng15_la-pngset.o .libs/libpng15_la-pngtrans.o .libs/libpng15_la-pngwio.o .libs/libpng15_la-pngwrite.o .libs/libpng15_la-pngwtran.o .libs/libpng15_la-pngwutil.o -L/home/alanger/workspace/softwares/yt-i686/lib/ -L/home/alanger/workspace/softwares/yt-i686/lib64/ -lz -lm -Wl,--version-script=libpng.vers -Wl,-soname -Wl,libpng15.so.15 -o .libs/libpng15.so.15.12.0 /usr/bin/ld: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: link: (cd ".libs" && rm -f "libpng15.so.15" && ln -s "libpng15.so.15.12.0" "libpng15.so.15") libtool: link: (cd ".libs" && rm -f "libpng15.so" && ln -s "libpng15.so.15.12.0" "libpng15.so") libtool: link: ar cru .libs/libpng15.a libpng15_la-png.o libpng15_la-pngerror.o libpng15_la-pngget.o libpng15_la-pngmem.o libpng15_la-pngpread.o libpng15_la-pngread.o libpng15_la-pngrio.o libpng15_la-pngrtran.o libpng15_la-pngrutil.o libpng15_la-pngset.o libpng15_la-pngtrans.o libpng15_la-pngwio.o libpng15_la-pngwrite.o libpng15_la-pngwtran.o libpng15_la-pngwutil.o ar: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: link: ranlib .libs/libpng15.a ranlib: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: link: ( cd ".libs" && rm -f "libpng15.la" && ln -s "../libpng15.la" "libpng15.la" ) cp libpng-config libpng15-config cp libpng.pc libpng15.pc make[1]: Entering directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' test -z "/home/alanger/workspace/softwares/yt-i686/bin" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/bin" /usr/bin/install -c libpng15-config '/home/alanger/workspace/softwares/yt-i686/bin' test -z "/home/alanger/workspace/softwares/yt-i686/lib" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/lib" /bin/bash ./libtool --mode=install /usr/bin/install -c libpng15.la'/home/alanger/workspace/softwares/yt-i686/lib' libtool: install: /usr/bin/install -c .libs/libpng15.so.15.12.0 /home/alanger/workspace/softwares/yt-i686/lib/libpng15.so.15.12.0 libtool: install: (cd /home/alanger/workspace/softwares/yt-i686/lib && { ln -s -f libpng15.so.15.12.0 libpng15.so.15 || { rm -f libpng15.so.15 && ln -s libpng15.so.15.12.0 libpng15.so.15; }; }) libtool: install: (cd /home/alanger/workspace/softwares/yt-i686/lib && { ln -s -f libpng15.so.15.12.0 libpng15.so || { rm -f libpng15.so && ln -s libpng15.so.15.12.0 libpng15.so; }; }) libtool: install: /usr/bin/install -c .libs/libpng15.lai /home/alanger/workspace/softwares/yt-i686/lib/libpng15.la libtool: install: /usr/bin/install -c .libs/libpng15.a /home/alanger/workspace/softwares/yt-i686/lib/libpng15.a libtool: install: chmod 644 /home/alanger/workspace/softwares/yt-i686/lib/libpng15.a libtool: install: ranlib /home/alanger/workspace/softwares/yt-i686/lib/libpng15.a ranlib: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: finish: PATH="/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/alanger//workspace/projections/bin:/home/alanger/workspace/softwares/gurobi501/linux32/bin:/home/alanger/workspace/projections/bin:/home/alanger/workspace/softwares/gurobi501/linux32/bin:/home/alanger/workspace/softwares/coopr/bin:/usr/gams:/sbin" ldconfig -n /home/alanger/workspace/softwares/yt-i686/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/alanger/workspace/softwares/yt-i686/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make install-exec-hook make[2]: Entering directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' cd /home/alanger/workspace/softwares/yt-i686/bin; rm -f libpng-config cd /home/alanger/workspace/softwares/yt-i686/bin; ln -s libpng15-config libpng-config + cd /home/alanger/workspace/softwares/yt-i686/lib + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.a + test -f libpng15.a + ln -s libpng15.a libpng.a + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.la + test -f libpng15.la + ln -s libpng15.la libpng.la + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.so + test -f libpng15.so + ln -s libpng15.so libpng.so + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.so.15.12 + test -f libpng15.so.15.12 + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.sl + test -f libpng15.sl + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.dylib + test -f libpng15.dylib + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.dll.a + test -f libpng15.dll.a make[2]: Leaving directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' test -z "/home/alanger/workspace/softwares/yt-i686/share/man/man3" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/share/man/man3" /usr/bin/install -c -m 644 libpng.3 libpngpf.3 '/home/alanger/workspace/softwares/yt-i686/share/man/man3' test -z "/home/alanger/workspace/softwares/yt-i686/share/man/man5" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/share/man/man5" /usr/bin/install -c -m 644 png.5 '/home/alanger/workspace/softwares/yt-i686/share/man/man5' test -z "/home/alanger/workspace/softwares/yt-i686/include/libpng15" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/include/libpng15" /usr/bin/install -c -m 644 pnglibconf.h '/home/alanger/workspace/softwares/yt-i686/include/libpng15' test -z "/home/alanger/workspace/softwares/yt-i686/lib/pkgconfig" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/lib/pkgconfig" /usr/bin/install -c -m 644 libpng15.pc '/home/alanger/workspace/softwares/yt-i686/lib/pkgconfig' test -z "/home/alanger/workspace/softwares/yt-i686/include/libpng15" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/include/libpng15" /usr/bin/install -c -m 644 png.h pngconf.h '/home/alanger/workspace/softwares/yt-i686/include/libpng15' make install-data-hook make[2]: Entering directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' cd /home/alanger/workspace/softwares/yt-i686/include; rm -f png.h pngconf.h pnglibconf.h cd /home/alanger/workspace/softwares/yt-i686/include; ln -s libpng15/png.h png.h cd /home/alanger/workspace/softwares/yt-i686/include; ln -s libpng15/pngconf.h \ pngconf.h cd /home/alanger/workspace/softwares/yt-i686/include; ln -s libpng15/pnglibconf.h \ pnglibconf.h cd /home/alanger/workspace/softwares/yt-i686/lib/pkgconfig; rm -f libpng.pc cd /home/alanger/workspace/softwares/yt-i686/lib/pkgconfig; ln -s libpng15.pc libpng.pc make[2]: Leaving directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' make[1]: Leaving directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' rm -f pngtest pngvalid test -z "dfn.c dfn?.out pngout.png libpng15.pc libpng15-config libpng.vers libpng.sym check.new pnglibconf.* symbols.new pngtest-log.txt scripts/*.out scripts/*.chk scripts/pnglibconf.dfn" || rm -f dfn.c dfn?.out pngout.png libpng15.pc libpng15-config libpng.vers libpng.sym check.new pnglibconf.* symbols.new pngtest-log.txt scripts/*.out scripts/*.chk scripts/pnglibconf.dfn test -z "libpng15.la" || rm -f libpng15.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop.

4 6

unpickle / load problems
by Elizabeth Tasker March 15, 2013

March 15, 2013

Hi, I'm struggling to unpickle / load_object a previously pickled / save_object. I've done: pf.h.save_object(allclouds, "clouds_pyfindclouds2_yt") but when I do: clouds = pf.h.load_object("clouds_pyfindclouds2_yt") I get: AttributeError Traceback (most recent call last) /Users/Elizabeth/yt/src/yt-hg/scripts/iyt in <module>() ----> 1 execfile("cloud_surfacedensity_b.py") /Users/Elizabeth/yt/src/yt-hg/scripts/iyt in <module>() 13 #file.close() 14 ---> 15 clouds = pf.h.load_object("clouds_pyfindclouds2_yt") /Users/Elizabeth/yt/src/yt-hg/yt/data_objects/hierarchy.pyc in load_object(self, name) 328 if obj is None: 329 return --> 330 obj = cPickle.loads(obj.value) 331 if iterable(obj) and len(obj) == 2: 332 obj = obj[1] # Just the object, not the pf /Users/Elizabeth/yt/src/yt-hg/yt/data_objects/data_containers.pyc in _reconstruct_object(*args, **kwargs) 4623 pf = pfs.get_pf_hash(pfid) 4624 cls = getattr(pf.h, dtype) -> 4625 obj = cls(*new_args) 4626 obj.field_parameters.update(field_parameters) 4627 return pf, obj /Users/Elizabeth/yt/src/yt-hg/yt/data_objects/data_containers.pyc in __init__(self, regions, fields, pf, **kwargs) 4046 self._all_overlap = [] 4047 self._cut_masks = {} -> 4048 self._get_all_regions() 4049 self._make_overlaps() 4050 self._get_list_of_grids() /Users/Elizabeth/yt/src/yt-hg/yt/data_objects/data_containers.pyc in _get_all_regions(self) 4057 self._all_regions.append(item) 4058 # So cut_masks don't get messed up. -> 4059 item._boolean_touched = True 4060 self._all_regions = np.unique(self._all_regions) 4061 AttributeError: ("'tuple' object has no attribute '_boolean_touched'", <function _reconstruct_object at 0x101dcd578>, ('73850deee907adf5217f43156c5057cd', 'boolean', [(GR_Enzo2_128amr5_zeus_turb_psupp_rr_0240, AMRCylinder (GR_Enzo2_128amr5_zeus_turb_psupp_rr_0240): center=[ 16. 16. 16.], _norm_vec=[ 0. 0. 1.], _radius=7.5, _height=0.100000208264), 'NOT', (GR_Enzo2_128amr5_zeus_turb_psupp_rr_0240, AMRCylinder (GR_Enzo2_128amr5_zeus_turb_psupp_rr_0240): center=[ 16. 16. 16.], _norm_vec=[ 0. 0. 1.], _radius=4.5, _height=0.100000208264)], {'bulk_velocity': array([ 0., 0., 0.]), 'center': array([ 0.5, 0.5, 0.5]), 'normal': array([ 0., 0., 1.])})) This is all on the same computer. Elizabeth

2 8

Total quantity projected over
by Elizabeth Tasker March 15, 2013

March 15, 2013

Hi, When you create a projection: projy_proj = pf.h.proj(2, 'Density', source=cloud) is there a way of knowing the sum of the quantity that has been integrated over? (or equally, knowing the integration depth for each cell, so the total quantity can be calculated)? I'd like to sum up the mass above a certain surface density threshold in my source, "cloud". From the above, projy_proj will tell me which regions of my cloud are above a threshold, but I can't think of an easy way to know how much mass has been summed over in that cell. projy_average = pf.h.proj(2, "CellMass", weight_field="Ones", source=cloud) will give me an average, but not a total. Elizabeth

3 4

Announcing yt 3.0 alpha 1
by Matthew Turk March 15, 2013

March 15, 2013

Hi everyone, We're proud to announce the first release ALPHA release of yt 3.0. yt has recently transitioned to a time-based release plan ( https://ytep.readthedocs.org/en/latest/YTEPs/YTEP-0008.html ) and this is the first scheduled alpha of 3.0. No date for a "final" release has yet been set. The yt 2.5 codebase, and further updates in the 2.x series, will be supported for a considerable amount of time and you do not need to upgrade. = yt 3.0?! = yt 3.0 represents a new direction forward for yt: getting rid of all the underlying assumptions that data needs to be sectioned off into nice little grid patches. This includes supporting Octree codes natively (NMSU-ART and RAMSES), eventual support for SPH codes, and even opaque data structures where the data is extremely large (ARTIO). We're even planning support for natively handling cylindrical and spherical coordinates. More: http://blog.yt-project.org/post/WhatsUpWith30.html However, this *is* an alpha release. Not all of the existing codes have been ported to 3.0. Below Additionally, this release benefits from the technical and non-technical contributions from many new people. yt is developed in the context of a community of contributors, and with the push toward a new architecture, we aim to expand that community considerably. In particular, this release has considerably benefited from contributions from Chris Moody, Sam Leitner, Doug Rudd, Anthony Scopatz and Kaylea Nelson. = Getting It! = To try out yt 3.0, you can now pull from the main yt repository, update to the yt-3.0 branch, and rebuild your extensions. Or, if you would like to create a new, safely sectioned off environment, simply re-run the normal "development" install script after changing the variable BRANCH to "yt-3.0". = What We Know Works = * RAMSES access to fluids (non-standard fluids require specification) particle access bug fixes coming in next few days * Enzo 2.x and new-style particle IO * FLASH (considerably faster for fluid access) * Stream frontend * NMSU-ART * ARTIO * Gadget: reading particles from disk in standard Gadget-IO, selecting and processing them. Because of the myriad gadget output formats, this may not work for your code yet. * OWLS: reading particles from disk, selecting and processing them. * Tipsy: partial support for reading, selecting and processing Other simulation platforms may work. Not all data objects have been ported, although most have. There may be corner cases (large or small) that have not been explored with these codes. = Reporting Problems = If you test out yt 3.0 we want to hear if it DID or DID NOT work! Feedback is crucial at this time. yt-users and yt-dev are both good forums for discussion, asking questions, and reporting problems. Lots of things have changed on the backend, but we have attempted to minimize the user-facing changes. To report a bug please go here: https://bitbucket.org/yt_analysis/yt/issues/new Note that you will not receive updates if you are not logged in when you create the bug. = What's Next? = The next alpha release (3.0a2) is scheduled to be released on May 15, 2013, but development can be monitored either at http://bitbucket.org/yt_analysis/yt-3.0 or in the main yt repository under the named branch "yt-3.0". We hope to have ready for inclusion additional improvements to Octree codes, a units implementation for arrays, a field naming scheme overhaul, and further robustness for particle codes. If you'd like to participate, please stop by #yt on irc.freenode.net ( http://yt-project.org/irc.html ) or yt-dev ( http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org ), or submit a pull request on BitBucket. = Thanks! = Thank you for reading to the end!

1 0

saving derived fields once more
by Michael Kuhlen March 14, 2013

March 14, 2013

I'd like to try out the saving derived fields feature that was discussed here http://lists.spacepope.org/pipermail/yt-users-spacepope.org/2013-February/0… Unfortunately the merge (PR #416) is one of the ones whose comments are lost because of a deleted repository. Could someone here explain how to use this functionality, i.e. how to save a derived field to disk by writing out a GDF file? Or point me to the place in the docs where this is discussed? Thanks! Mike -- ********************************************************************* * * * Dr. Michael Kuhlen Theoretical Astrophysics Center * * email: mqk(a)astro.berkeley.edu UC Berkeley * * cell phone: (831) 588-1468 B-116 Hearst Field Annex # 3411 * * skype username: mikekuhlen Berkeley, CA 94720 * * * *********************************************************************

5 6

install error
by Akhil langer March 14, 2013

March 14, 2013

I am getting some errors while trying to install yt on ubuntu. Os info: Linux ubuntu 3.2.0-32-generic-pae #51-Ubuntu SMP Wed Sep 26 21:54:23 UTC 2012 i686 i686 i386 GNU/Linux Please find below the install logs. xray_emissivity.h5: OK hdf5-1.8.9.tar.gz: OK zlib-1.2.3.tar.bz2: OK bzip2-1.0.5.tar.gz: OK libpng-1.5.12.tar.gz: OK freetype-2.4.4.tar.gz: OK sqlite-autoconf-3070500.tar.gz: OK zeromq-2.2.0.tar.gz: OK pyzmq-2.1.11.tar.gz: OK tornado-2.2.tar.gz: OK Python-2.7.3.tgz: OK numpy-1.6.1.tar.gz: OK matplotlib-1.2.0.tar.gz: OK ipython-0.13.1.tar.gz: OK h5py-2.1.0.tar.gz: OK Cython-0.17.1.tar.gz: OK reason-js-20120623.zip: OK Forthon-0.8.10.tar.gz: OK nose-1.2.1.tar.gz: OK python-hglib-0.2.tar.gz: OK sympy-0.7.2.tar.gz: OK rockstar-0.99.6.tar.gz: OK If compilation produces errors, or a large number of warnings, please read README.COMPILATION.PROBLEMS -- you might be able to adjust the flags in this Makefile to improve matters. Also in README.COMPILATION.PROBLEMS are some hints that may help if your build produces an executable which is unable to correctly handle so-called 'large files' -- files of size 2GB or more. gcc -fPIC -c blocksort.c gcc -fPIC -c huffman.c gcc -fPIC -c crctable.c gcc -fPIC -c randtable.c gcc -fPIC -c compress.c gcc -fPIC -c decompress.c gcc -fPIC -c bzlib.c rm -f libbz2.a ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o ranlib libbz2.a gcc -fPIC -c bzip2.c gcc -fPIC -fPIC -o bzip2 bzip2.o -L. -lbz2 gcc -fPIC -c bzip2recover.c gcc -fPIC -fPIC -o bzip2recover bzip2recover.o if ( test ! -d /home/alanger/workspace/softwares/yt-i686/bin ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/bin ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/lib ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/lib ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/man ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/man ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/man/man1 ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/man/man1 ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/include ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/include ; fi cp -f bzip2 /home/alanger/workspace/softwares/yt-i686/bin/bzip2 cp -f bzip2 /home/alanger/workspace/softwares/yt-i686/bin/bunzip2 cp -f bzip2 /home/alanger/workspace/softwares/yt-i686/bin/bzcat cp -f bzip2recover /home/alanger/workspace/softwares/yt-i686/bin/bzip2recover chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzip2 chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bunzip2 chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzcat chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzip2recover cp -f bzip2.1 /home/alanger/workspace/softwares/yt-i686/man/man1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzip2.1 cp -f bzlib.h /home/alanger/workspace/softwares/yt-i686/include chmod a+r /home/alanger/workspace/softwares/yt-i686/include/bzlib.h cp -f libbz2.a /home/alanger/workspace/softwares/yt-i686/lib chmod a+r /home/alanger/workspace/softwares/yt-i686/lib/libbz2.a cp -f bzgrep /home/alanger/workspace/softwares/yt-i686/bin/bzgrep ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzgrep /home/alanger/workspace/softwares/yt-i686/bin/bzegrep ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzgrep /home/alanger/workspace/softwares/yt-i686/bin/bzfgrep chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzgrep cp -f bzmore /home/alanger/workspace/softwares/yt-i686/bin/bzmore ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzmore /home/alanger/workspace/softwares/yt-i686/bin/bzless chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzmore cp -f bzdiff /home/alanger/workspace/softwares/yt-i686/bin/bzdiff ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzdiff /home/alanger/workspace/softwares/yt-i686/bin/bzcmp chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzdiff cp -f bzgrep.1 bzmore.1 bzdiff.1 /home/alanger/workspace/softwares/yt-i686/man/man1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzgrep.1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzmore.1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzdiff.1 echo ".so man1/bzgrep.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzegrep.1 echo ".so man1/bzgrep.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzfgrep.1 echo ".so man1/bzmore.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzless.1 echo ".so man1/bzdiff.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzcmp.1 gcc -shared -Wl,-soname -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o gcc -fPIC -o bzip2-shared bzip2.c libbz2.so.1.0.4 rm -f libbz2.so.1.0 ln -s libbz2.so.1.0.4 libbz2.so.1.0 `libbz2.so.1.0.4' -> `/home/alanger/workspace/softwares/yt-i686/lib/libbz2.so.1.0.4' Checking for gcc... Checking for shared library support... Building shared library libz.so.1.2.3 with gcc. Checking for unistd.h... Yes. Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf() Checking for vsnprintf() in stdio.h... Yes. Checking for return value of vsnprintf()... Yes. Checking for errno.h... Yes. Checking for mmap support... Yes. gcc -fPIC -O3 -DUSE_MMAP -c -o adler32.o adler32.c gcc -fPIC -O3 -DUSE_MMAP -c -o compress.o compress.c gcc -fPIC -O3 -DUSE_MMAP -c -o crc32.o crc32.c gcc -fPIC -O3 -DUSE_MMAP -c -o gzio.o gzio.c gcc -fPIC -O3 -DUSE_MMAP -c -o uncompr.o uncompr.c gcc -fPIC -O3 -DUSE_MMAP -c -o deflate.o deflate.c gcc -fPIC -O3 -DUSE_MMAP -c -o trees.o trees.c gcc -fPIC -O3 -DUSE_MMAP -c -o zutil.o zutil.c gcc -fPIC -O3 -DUSE_MMAP -c -o inflate.o inflate.c gcc -fPIC -O3 -DUSE_MMAP -c -o infback.o infback.c gcc -fPIC -O3 -DUSE_MMAP -c -o inftrees.o inftrees.c gcc -fPIC -O3 -DUSE_MMAP -c -o inffast.o inffast.c gcc -shared -Wl,-soname,libz.so.1 -o libz.so.1.2.3 adler32.o compress.o crc32.o gzio.o uncompr.o deflate.o trees.o zutil.o inflate.o infback.o inftrees.o inffast.o rm -f libz.so libz.so.1 ln -s libz.so.1.2.3 libz.so ln -s libz.so.1.2.3 libz.so.1 cp zlib.h zconf.h /home/alanger/workspace/softwares/yt-i686//include chmod 644 /home/alanger/workspace/softwares/yt-i686//include/zlib.h /home/alanger/workspace/softwares/yt-i686//include/zconf.h cp libz.so.1.2.3 /home/alanger/workspace/softwares/yt-i686//lib cd /home/alanger/workspace/softwares/yt-i686//lib; chmod 755 libz.so.1.2.3 cd /home/alanger/workspace/softwares/yt-i686//lib; if test -f libz.so.1.2.3; then \ rm -f libz.so libz.so.1; \ ln -s libz.so.1.2.3 libz.so; \ ln -s libz.so.1.2.3 libz.so.1; \ (ldconfig || true) >/dev/null 2>&1; \ fi cp zlib.3 /home/alanger/workspace/softwares/yt-i686//share/man/man3 chmod 644 /home/alanger/workspace/softwares/yt-i686//share/man/man3/zlib.3 rm -f *.o *~ example minigzip \ libz.* foo.gz so_locations \ _match.s maketree contrib/infback9/*.o checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of gcc... gcc3 checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking how to print strings... printf checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking how to run the C preprocessor... gcc -E checking for sed... /bin/sed checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a C preprocessor that does not parse its input... gcc -E checking for ANSI C header files... (cached) yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for C/C++ restrict keyword... __restrict checking for working strtod... yes checking for memset... yes checking for pow... no checking for pow in -lm... yes checking for zlibVersion in -lz... yes checking for feenableexcept in -lm... yes checking for feenableexcept... yes checking if using Solaris linker... no checking if libraries can be versioned... yes checking for symbol prefix... configure: pkgconfig directory is ${libdir}/pkgconfig configure: creating ./config.status config.status: creating Makefile config.status: creating libpng.pc config.status: creating libpng-config config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands rm -f pnglibconf.dfn dfn?.out gawk -f ./scripts/options.awk out=dfn1.out version=search\ ./pngconf.h ./scripts/pnglibconf.dfa\ ./pngusr.dfa 1>&2 gawk -f ./scripts/options.awk out=dfn2.out dfn1.out 1>&2 rm dfn1.out mv dfn2.out pnglibconf.dfn rm -f pnglibconf.out dfn.c dfn?.out test -d scripts || mkdir scripts echo '#include "pnglibconf.dfn"' >dfn.c gcc -E -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG\ -I/home/alanger/workspace/softwares/yt-i686/include -DPNGLIB_LIBNAME='PNG15_0' -DPNGLIB_VERSION='1.5.12' -DSYMBOL_PREFIX='' -DPNG_NO_USE_READ_MACROS -DPNG_BUILDING_SYMBOL_TABLE dfn.c > dfn1.out /bin/sed -n -e 's|^.*PNG_DEFN_MAGIC *-$.*$- *PNG_DEFN_END.*$|\1|p'\ dfn1.out >dfn2.out /bin/sed -e 's| *PNG_JOIN *||g' -e 's| *$||' dfn2.out >dfn3.out rm -f dfn.c dfn[12].out mv dfn3.out pnglibconf.out rm -f pnglibconf.h cp pnglibconf.out pnglibconf.h /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c -o libpng15_la-png.lo `test -f 'png.c' || echo './'`png.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c png.c -fPIC -DPIC -o .libs/libpng15_la-png.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c png.c -o libpng15_la-png.o >/dev/null 2>&1 mv -f .deps/libpng15_la-png.Tpo .deps/libpng15_la-png.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c -o libpng15_la-pngerror.lo `test -f 'pngerror.c' || echo './'`pngerror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c pngerror.c -fPIC -DPIC -o .libs/libpng15_la-pngerror.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c pngerror.c -o libpng15_la-pngerror.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngerror.Tpo .deps/libpng15_la-pngerror.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngget.lo -MD -MP -MF .deps/libpng15_la-pngget.Tpo -c -o libpng15_la-pngget.lo `test -f 'pngget.c' || echo './'`pngget.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngget.lo -MD -MP -MF .deps/libpng15_la-pngget.Tpo -c pngget.c -fPIC -DPIC -o .libs/libpng15_la-pngget.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngget.lo -MD -MP -MF .deps/libpng15_la-pngget.Tpo -c pngget.c -o libpng15_la-pngget.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngget.Tpo .deps/libpng15_la-pngget.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c -o libpng15_la-pngmem.lo `test -f 'pngmem.c' || echo './'`pngmem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c pngmem.c -fPIC -DPIC -o .libs/libpng15_la-pngmem.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c pngmem.c -o libpng15_la-pngmem.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngmem.Tpo .deps/libpng15_la-pngmem.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c -o libpng15_la-pngpread.lo `test -f 'pngpread.c' || echo './'`pngpread.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c pngpread.c -fPIC -DPIC -o .libs/libpng15_la-pngpread.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c pngpread.c -o libpng15_la-pngpread.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngpread.Tpo .deps/libpng15_la-pngpread.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c -o libpng15_la-pngread.lo `test -f 'pngread.c' || echo './'`pngread.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c pngread.c -fPIC -DPIC -o .libs/libpng15_la-pngread.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c pngread.c -o libpng15_la-pngread.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngread.Tpo .deps/libpng15_la-pngread.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c -o libpng15_la-pngrio.lo `test -f 'pngrio.c' || echo './'`pngrio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c pngrio.c -fPIC -DPIC -o .libs/libpng15_la-pngrio.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c pngrio.c -o libpng15_la-pngrio.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngrio.Tpo .deps/libpng15_la-pngrio.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c -o libpng15_la-pngrtran.lo `test -f 'pngrtran.c' || echo './'`pngrtran.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c pngrtran.c -fPIC -DPIC -o .libs/libpng15_la-pngrtran.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c pngrtran.c -o libpng15_la-pngrtran.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngrtran.Tpo .deps/libpng15_la-pngrtran.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c -o libpng15_la-pngrutil.lo `test -f 'pngrutil.c' || echo './'`pngrutil.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c pngrutil.c -fPIC -DPIC -o .libs/libpng15_la-pngrutil.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c pngrutil.c -o libpng15_la-pngrutil.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngrutil.Tpo .deps/libpng15_la-pngrutil.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c -o libpng15_la-pngset.lo `test -f 'pngset.c' || echo './'`pngset.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c pngset.c -fPIC -DPIC -o .libs/libpng15_la-pngset.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c pngset.c -o libpng15_la-pngset.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngset.Tpo .deps/libpng15_la-pngset.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c -o libpng15_la-pngtrans.lo `test -f 'pngtrans.c' || echo './'`pngtrans.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c pngtrans.c -fPIC -DPIC -o .libs/libpng15_la-pngtrans.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c pngtrans.c -o libpng15_la-pngtrans.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngtrans.Tpo .deps/libpng15_la-pngtrans.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c -o libpng15_la-pngwio.lo `test -f 'pngwio.c' || echo './'`pngwio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c pngwio.c -fPIC -DPIC -o .libs/libpng15_la-pngwio.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c pngwio.c -o libpng15_la-pngwio.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwio.Tpo .deps/libpng15_la-pngwio.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c -o libpng15_la-pngwrite.lo `test -f 'pngwrite.c' || echo './'`pngwrite.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c pngwrite.c -fPIC -DPIC -o .libs/libpng15_la-pngwrite.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c pngwrite.c -o libpng15_la-pngwrite.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwrite.Tpo .deps/libpng15_la-pngwrite.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c -o libpng15_la-pngwtran.lo `test -f 'pngwtran.c' || echo './'`pngwtran.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c pngwtran.c -fPIC -DPIC -o .libs/libpng15_la-pngwtran.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c pngwtran.c -o libpng15_la-pngwtran.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwtran.Tpo .deps/libpng15_la-pngwtran.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c -o libpng15_la-pngwutil.lo `test -f 'pngwutil.c' || echo './'`pngwutil.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c pngwutil.c -fPIC -DPIC -o .libs/libpng15_la-pngwutil.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c pngwutil.c -o libpng15_la-pngwutil.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwutil.Tpo .deps/libpng15_la-pngwutil.Plo rm -f scripts/vers.out dfn.c dfn?.out test -d scripts || mkdir scripts echo '#include "scripts/vers.dfn"' >dfn.c gcc -E -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG\ -I/home/alanger/workspace/softwares/yt-i686/include -DPNGLIB_LIBNAME='PNG15_0' -DPNGLIB_VERSION='1.5.12' -DSYMBOL_PREFIX='' -DPNG_NO_USE_READ_MACROS -DPNG_BUILDING_SYMBOL_TABLE dfn.c > dfn1.out /bin/sed -n -e 's|^.*PNG_DEFN_MAGIC *-$.*$- *PNG_DEFN_END.*$|\1|p'\ dfn1.out >dfn2.out /bin/sed -e 's| *PNG_JOIN *||g' -e 's| *$||' dfn2.out >dfn3.out rm -f dfn.c dfn[12].out mv dfn3.out scripts/vers.out rm -f libpng.vers cp scripts/vers.out libpng.vers /bin/bash ./libtool --tag=CC --mode=link gcc -I/home/alanger/workspace/softwares/yt-i686/include -no-undefined -export-dynamic -version-number 15:12:0 -Wl,--version-script=libpng.vers -L/home/alanger/workspace/softwares/yt-i686/lib/ -L/home/alanger/workspace/softwares/yt-i686/lib64/ -L/home/alanger/workspace/softwares/yt-i686/lib/ -L/home/alanger/workspace/softwares/yt-i686/lib64/ -o libpng15.la -rpath /home/alanger/workspace/softwares/yt-i686/lib libpng15_la-png.lo libpng15_la-pngerror.lo libpng15_la-pngget.lo libpng15_la-pngmem.lo libpng15_la-pngpread.lo libpng15_la-pngread.lo libpng15_la-pngrio.lo libpng15_la-pngrtran.lo libpng15_la-pngrutil.lo libpng15_la-pngset.lo libpng15_la-pngtrans.lo libpng15_la-pngwio.lo libpng15_la-pngwrite.lo libpng15_la-pngwtran.lo libpng15_la-pngwutil.lo -lm -lz -lm libtool: link: gcc -shared -fPIC -DPIC .libs/libpng15_la-png.o .libs/libpng15_la-pngerror.o .libs/libpng15_la-pngget.o .libs/libpng15_la-pngmem.o .libs/libpng15_la-pngpread.o .libs/libpng15_la-pngread.o .libs/libpng15_la-pngrio.o .libs/libpng15_la-pngrtran.o .libs/libpng15_la-pngrutil.o .libs/libpng15_la-pngset.o .libs/libpng15_la-pngtrans.o .libs/libpng15_la-pngwio.o .libs/libpng15_la-pngwrite.o .libs/libpng15_la-pngwtran.o .libs/libpng15_la-pngwutil.o -L/home/alanger/workspace/softwares/yt-i686/lib/ -L/home/alanger/workspace/softwares/yt-i686/lib64/ -lz -lm -Wl,--version-script=libpng.vers -Wl,-soname -Wl,libpng15.so.15 -o .libs/libpng15.so.15.12.0 /usr/bin/ld: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: link: (cd ".libs" && rm -f "libpng15.so.15" && ln -s "libpng15.so.15.12.0" "libpng15.so.15") libtool: link: (cd ".libs" && rm -f "libpng15.so" && ln -s "libpng15.so.15.12.0" "libpng15.so") libtool: link: ar cru .libs/libpng15.a libpng15_la-png.o libpng15_la-pngerror.o libpng15_la-pngget.o libpng15_la-pngmem.o libpng15_la-pngpread.o libpng15_la-pngread.o libpng15_la-pngrio.o libpng15_la-pngrtran.o libpng15_la-pngrutil.o libpng15_la-pngset.o libpng15_la-pngtrans.o libpng15_la-pngwio.o libpng15_la-pngwrite.o libpng15_la-pngwtran.o libpng15_la-pngwutil.o ar: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: link: ranlib .libs/libpng15.a ranlib: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: link: ( cd ".libs" && rm -f "libpng15.la" && ln -s "../libpng15.la" "libpng15.la" ) cp libpng-config libpng15-config cp libpng.pc libpng15.pc make[1]: Entering directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' test -z "/home/alanger/workspace/softwares/yt-i686/bin" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/bin" /usr/bin/install -c libpng15-config '/home/alanger/workspace/softwares/yt-i686/bin' test -z "/home/alanger/workspace/softwares/yt-i686/lib" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/lib" /bin/bash ./libtool --mode=install /usr/bin/install -c libpng15.la'/home/alanger/workspace/softwares/yt-i686/lib' libtool: install: /usr/bin/install -c .libs/libpng15.so.15.12.0 /home/alanger/workspace/softwares/yt-i686/lib/libpng15.so.15.12.0 libtool: install: (cd /home/alanger/workspace/softwares/yt-i686/lib && { ln -s -f libpng15.so.15.12.0 libpng15.so.15 || { rm -f libpng15.so.15 && ln -s libpng15.so.15.12.0 libpng15.so.15; }; }) libtool: install: (cd /home/alanger/workspace/softwares/yt-i686/lib && { ln -s -f libpng15.so.15.12.0 libpng15.so || { rm -f libpng15.so && ln -s libpng15.so.15.12.0 libpng15.so; }; }) libtool: install: /usr/bin/install -c .libs/libpng15.lai /home/alanger/workspace/softwares/yt-i686/lib/libpng15.la libtool: install: /usr/bin/install -c .libs/libpng15.a /home/alanger/workspace/softwares/yt-i686/lib/libpng15.a libtool: install: chmod 644 /home/alanger/workspace/softwares/yt-i686/lib/libpng15.a libtool: install: ranlib /home/alanger/workspace/softwares/yt-i686/lib/libpng15.a ranlib: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: finish: PATH="/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/alanger//workspace/projections/bin:/home/alanger/workspace/softwares/gurobi501/linux32/bin:/home/alanger/workspace/projections/bin:/home/alanger/workspace/softwares/gurobi501/linux32/bin:/home/alanger/workspace/softwares/coopr/bin:/usr/gams:/sbin" ldconfig -n /home/alanger/workspace/softwares/yt-i686/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/alanger/workspace/softwares/yt-i686/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make install-exec-hook make[2]: Entering directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' cd /home/alanger/workspace/softwares/yt-i686/bin; rm -f libpng-config cd /home/alanger/workspace/softwares/yt-i686/bin; ln -s libpng15-config libpng-config + cd /home/alanger/workspace/softwares/yt-i686/lib + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.a + test -f libpng15.a + ln -s libpng15.a libpng.a + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.la + test -f libpng15.la + ln -s libpng15.la libpng.la + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.so + test -f libpng15.so + ln -s libpng15.so libpng.so + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.so.15.12 + test -f libpng15.so.15.12 + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.sl + test -f libpng15.sl + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.dylib + test -f libpng15.dylib + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.dll.a + test -f libpng15.dll.a make[2]: Leaving directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' test -z "/home/alanger/workspace/softwares/yt-i686/share/man/man3" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/share/man/man3" /usr/bin/install -c -m 644 libpng.3 libpngpf.3 '/home/alanger/workspace/softwares/yt-i686/share/man/man3' test -z "/home/alanger/workspace/softwares/yt-i686/share/man/man5" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/share/man/man5" /usr/bin/install -c -m 644 png.5 '/home/alanger/workspace/softwares/yt-i686/share/man/man5' test -z "/home/alanger/workspace/softwares/yt-i686/include/libpng15" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/include/libpng15" /usr/bin/install -c -m 644 pnglibconf.h '/home/alanger/workspace/softwares/yt-i686/include/libpng15' test -z "/home/alanger/workspace/softwares/yt-i686/lib/pkgconfig" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/lib/pkgconfig" /usr/bin/install -c -m 644 libpng15.pc '/home/alanger/workspace/softwares/yt-i686/lib/pkgconfig' test -z "/home/alanger/workspace/softwares/yt-i686/include/libpng15" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/include/libpng15" /usr/bin/install -c -m 644 png.h pngconf.h '/home/alanger/workspace/softwares/yt-i686/include/libpng15' make install-data-hook make[2]: Entering directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' cd /home/alanger/workspace/softwares/yt-i686/include; rm -f png.h pngconf.h pnglibconf.h cd /home/alanger/workspace/softwares/yt-i686/include; ln -s libpng15/png.h png.h cd /home/alanger/workspace/softwares/yt-i686/include; ln -s libpng15/pngconf.h \ pngconf.h cd /home/alanger/workspace/softwares/yt-i686/include; ln -s libpng15/pnglibconf.h \ pnglibconf.h cd /home/alanger/workspace/softwares/yt-i686/lib/pkgconfig; rm -f libpng.pc cd /home/alanger/workspace/softwares/yt-i686/lib/pkgconfig; ln -s libpng15.pc libpng.pc make[2]: Leaving directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' make[1]: Leaving directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' rm -f pngtest pngvalid test -z "dfn.c dfn?.out pngout.png libpng15.pc libpng15-config libpng.vers libpng.sym check.new pnglibconf.* symbols.new pngtest-log.txt scripts/*.out scripts/*.chk scripts/pnglibconf.dfn" || rm -f dfn.c dfn?.out pngout.png libpng15.pc libpng15-config libpng.vers libpng.sym check.new pnglibconf.* symbols.new pngtest-log.txt scripts/*.out scripts/*.chk scripts/pnglibconf.dfn test -z "libpng15.la" || rm -f libpng15.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop.

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Fwd: [AstroPy] Astronomy & Astrophysics Mini-Symposium at SciPy2013
by Matthew Turk March 13, 2013

March 13, 2013

Hi all, I'm not sure that this has made it here before, but I wanted to forward it with a note that the SciPy conference is really a lot of fun. I'll be there, and co-organizing some of the Birds of a Feather sessions, and there should also be ample opportunity to learn about other Python projects both in astronomy and out of astronomy. I'd highly encourage attending, as it's really a fun conference with lots of diverse domains represented. The call for abstracts is *very* soon, and if you have something you'd like to present I would encourage you to submit! -Matt ---------- Forwarded message ---------- From: Tom Aldcroft <aldcroft(a)head.cfa.harvard.edu> Date: Thu, Feb 28, 2013 at 4:08 PM Subject: [AstroPy] Astronomy & Astrophysics Mini-Symposium at SciPy2013 To: astropy <astropy(a)scipy.org> Dear colleagues, We are planning to have an Astronomy & Astrophysics Mini-Symposium at the SciPy2013 conference in Austin, TX in June 2013 [1]. The use of Python for astronomy research is growing rapidly, and we have seen the emergence of large and well-organized community efforts to develop analysis packages for astronomy. I'm excited to have the opportunity to organize and chair this mini-symposium. This is timely moment for the astronomy Python community to get together and present what's new and exciting, as well as to discuss and define future priorities. This will be an evening session taking 1.5 hours and consisting of 4 - 6 talks and some form of open discussion. I'd like to encourage everybody to attend SciPy2013 this year and participate in the overall discussion. We need viewpoints not only from people deeply involved in development, but also newcomers and those who are just trying to get their research done. I also want to specifically invite people to submit a talk or poster abstract so we can make the mini-symposium interesting. The abstract deadline is March 20. If you have questions or suggestions please contact me or post to this list as appropriate. Please forward this message to your colleagues who may not be on this list. I'm interested in ideas for discussion topics that would be productive. One possibility is examining some of the large community efforts (e.g. yt, SunPy, Astropy, etc) to look for opportunities for cross-project coordination. Best regards, Tom Aldcroft [1] http://conference.scipy.org/scipy2013/ _______________________________________________ AstroPy mailing list AstroPy(a)scipy.org http://mail.scipy.org/mailman/listinfo/astropy

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Fwd: SciPy John Hunter Excellence in Plotting Contest
by Anthony Scopatz March 8, 2013

March 8, 2013

Hey yters! I wanted to bring your attention to this part of SciPy 2013. I think it would be great if yt made a good showing in this competition. Be Well Anthony ---------- Forwarded message ---------- From: SciPy 2013 <scipy-organizers(a)scipy.org> Date: Thu, Mar 7, 2013 at 3:18 PM Subject: SciPy John Hunter Excellence in Plotting Contest To: scopatz(a)gmail.com Email not displaying correctly? View it in your browser.<http://us1.campaign-archive1.com/?u=e91b4574d5d1709a9dc4f7ab7&id=999d7ba343…> Scientific Computing with Python-Austin, Texas-June 24-29, 2013 SciPy John Hunter Excellence in Plotting Contest In memory of John Hunter, we are pleased to announce the first SciPy John Hunter Excellence in Plotting Competition. This open competition aims to highlight the importance of quality plotting to scientific progress and showcase the capabilities of the current generation of plotting software. Participants are invited to submit scientific plots to be judged by a panel. The winning entries will be announced and displayed at the conference. NumFOCUS is graciously sponsoring cash prizes for the winners in the following amounts: - 1st prize: $500 - 2nd prize: $200 - 3rd prize: $100 Instructions - Entries must be submitted by April 3 via e-mail<plotting-contest(a)scipy.org> . - Plots may be produced with any combination of Python-based tools (it is not required that they use matplotlib, for example). - Source code for the plot must be provided, along with a rendering of the plot in a vector format (PDF, PS, etc.). If the data can not be shared for reasons of size or licensing, "fake" data may be substituted, along with an image of the plot using real data. - Entries will be judged on their clarity, innovation and aesthetics, but most importantly for their effectiveness in illuminating real scientific work. Entrants are encouraged to submit plots that were used during the course of research, rather than merely being hypothetical. - SciPy reserves the right to display the entry at the conference, use in any materials or on its website, providing attribution to the original author(s). Important dates: - April 3rd: Plotting submissions due - Monday-Tuesday, June 24 - 25: SciPy 2013 Tutorials, Austin TX - Wednesday-Thursday, June 26 - 27: SciPy 2013 Conference, Austin TX * Winners will be announced during the conference days - Friday-Saturday, June 27 - 28: SciPy 2013 Sprints, Austin TX & remote We look forward to exciting submissions that push the boundaries of plotting, in this, our first attempt at this kind of competition. The SciPy Plotting Contest Organizer -Michael Droettboom, Space Telescope Science Institute You are receiving this email because you subscribed to the mailing list or registered for the SciPy 2010 or SciPy 2011 conference in Austin, TX. Unsubscribe<http://scipy.us1.list-manage.com/unsubscribe?u=e91b4574d5d1709a9dc4f7ab7&id…> scopatz(a)gmail.com from this list | Forward to a friend<http://us1.forward-to-friend1.com/forward?u=e91b4574d5d1709a9dc4f7ab7&id=99…>| Update your profile<http://scipy.us1.list-manage.com/profile?u=e91b4574d5d1709a9dc4f7ab7&id=069…> *Our mailing address is:* Enthought, Inc. 515 Congress Ave. Austin, TX 78701 Add us to your address book<http://scipy.us1.list-manage.com/vcard?u=e91b4574d5d1709a9dc4f7ab7&id=069dc…> *Copyright (C) 2013 Enthought, Inc. All rights reserved.*

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Re: [yt-users] yt and PLUTO
by j s oishi March 7, 2013

March 7, 2013

Hi Marc (cc: yt-users), Thanks for your interest in yt! I have not used yt and pluto, but I have used yt with some other Chombo data in the past. I would strongly suggest you join the yt-users mailing list, which you can do here: http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org or dropping by our IRC chat room, http://yt-project.org/irc.html I believe Andrew Myers, who is active on yt-users, has the most experience using Chombo data in yt. However, the mailing list is the best way to get help. If you do post to yt-users, please include some details about exactly what is going wrong when you try to load your Pluto data. This will help get you going faster. take care, and welcome to yt! yours, Jeff On Wed, Mar 6, 2013 at 8:43 AM, Marc Schartmann <schartmann(a)mpe.mpg.de> wrote: > Dear Jeff Oishi, > > I would very much like to use yt for analyzing my PLUTO simulations. I saw > that there is supposed to be support for the Chombo hdf5 files, but it does > not seem to work for me > (maybe not for PLUTO 4.0?). > Do you know of anybody who is working with PLUTO + yt, I might contact? > > Thanks a lot. > > Best regards from Munich, > > Marc > > > -- > > ********************************************************************** > Marc Schartmann | Tel. 089-30000-3712 > Max-Planck-Institut für | (Tuesday-Thursday) > extraterrestrische Physik | > Giessenbachstrasse | Fax: 089-30000-3569 > 85748 Garching | schartmann(a)mpe.mpg.de > ********************************************************************** > and > ********************************************************************** > Universitätssternwarte | Tel. 089-2180-6028 > Scheinerstrasse 1 | (Monday & Friday) > 81679 München | > ********************************************************************** > > > >

4 4

installation problem: unrecognized command line option ‘-faltivec’
by Jean-Claude Passy March 7, 2013

March 7, 2013

Hi all, I am having trouble installing the current dev version. I get the following error: * ----------------------------------------------------------------------------------------------------------------------------------- * *Building LAPACK* *Installing numpy-1.6.1 (arguments: 'numpy-1.6.1 --fcompiler=gnu95')* ********************************************** * FAILURE REPORT:* ********************************************** * * *compiling C sources* *C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes* * * *creating build/temp.macosx-10.4-x86_64-2.7/numpy/core/blasdot* *compile options: '-DNO_ATLAS_INFO=3 -Inumpy/core/blasdot -Inumpy/core/include -Ibuild/src.macosx-10.4-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/Users/jcpassy/Work/yt-x86_64/include/python2.7 -Ibuild/src.macosx-10.4-x86_64-2.7/numpy/core/src/multiarray -Ibuild/src.macosx-10.4-x86_64-2.7/numpy/core/src/umath -c'* *extra options: '-faltivec -I/System/Library/Frameworks/vecLib.framework/Headers'* *gcc: numpy/core/blasdot/_dotblas.c* *gcc.exec: error: unrecognized command line option ‘-faltivec’* *gcc.exec: error: unrecognized command line option ‘-faltivec’* *error: Command "gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -DNO_ATLAS_INFO=3 -Inumpy/core/blasdot -Inumpy/core/include -Ibuild/src.macosx-10.4-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/Users/jcpassy/Work/yt-x86_64/include/python2.7 -Ibuild/src.macosx-10.4-x86_64-2.7/numpy/core/src/multiarray -Ibuild/src.macosx-10.4-x86_64-2.7/numpy/core/src/umath -c numpy/core/blasdot/_dotblas.c -o build/temp.macosx-10.4-x86_64-2.7/numpy/core/blasdot/_dotblas.o -faltivec -I/System/Library/Frameworks/vecLib.framework/Headers" failed with exit status 1* * ----------------------------------------------------------------------------------------------------------------------------------- * I am on OSX 10.8.2, with gcc 4.7.2 (but I have also tried the build-in version 4.2.1). I have tried turning on the different NUMPY_ARGS, but it did not help. Does anybody have an idea how to fix this? Thanks a lot guys, JC

2 2

Trouble with SFR plots of enzo data
by Munier Azzam Salem March 5, 2013

March 5, 2013

Hey Guys, I've been using yt's star analysis module to produce plots of SFR vs. time to compare the star formation histories across multiple runs. It works well except when it doesn't. I've been working with enzo and for late time files (I believe produced after a run was restarted) the star formation history cuts off and drops to 0 for the earlier times. Weirder still, when I open earlier data files and plot them atop, the earlier results disagree! I attached a plot of this below. Does anyone know what's happening here? Is there a better way to do this? best, Munier The Code: *import matplotlib as mpl* *mpl.use('agg')* *import matplotlib.pyplot as plt* *from yt.mods import ** *from yt.analysis_modules.star_analysis.api import ** * * *def SFR(fName,stroke):* * * * # open file* * try:* * pf=load(fName)* * except YTOutputNotIdentified:* * return False* * * * # calculate SFR* * dd = pf.h.all_data()* * sfr = StarFormationRate(pf,data_source=dd)* * * * plt.plot(sfr.time,sfr.Msol_yr,stroke,linewidth=1)* * return ( sfr.time.min() , sfr.time.max() )* * * *MaxVals = []* *SFR("../FIDUCIAL/DD0005/test_sim_0005","k-")* *SFR("../FIDUCIAL/DD0010/test_sim_0010","k-")* *SFR("../FIDUCIAL/DD0017/test_sim_0017","k-")* * * *plt.xlim((1.27E10,1.30E10))* *plt.savefig("SFR")* -- Munier A. Salem // 845.489.6450

7 18

Problems with pickle
by Elizabeth Tasker March 5, 2013

March 5, 2013

Hi, I'm getting a problem with pickle that I've not seen before. I have an extracted_region that I'm trying to pickle via: file = open(('cloud%d_pyfindclouds2.pickle' % p), 'wb') cPickle.dump(cloud, file, protocol=-1) file.close() but I'm getting: In [16]: cPickle.dump(cloud, file, protocol=-1) --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) /Users/Elizabeth/yt/src/yt-hg/scripts/iyt in <module>() ----> 1 cPickle.dump(cloud, file, protocol=-1) /Users/Elizabeth/yt/src/yt-hg/yt/data_objects/data_containers.pyc in __reduce__(self) 403 def __reduce__(self): 404 args = tuple([self.pf._hash(), self._type_name] + --> 405 [getattr(self, n) for n in self._con_args] + 406 [self.field_parameters]) 407 return (_reconstruct_object, args) AttributeError: 'AMRBooleanRegion' object has no attribute 'r' Does anyone know what might be causing this? Elizabeth

3 5

Announcing the release of yt 2.5!
by John ZuHone March 1, 2013

March 1, 2013

Dear Colleagues, We’re proud to announce the release of version 2.5 of the yt Project, http://yt-project.org/. The new version includes many new features, refinements of existing features and numerous bugfixes. We encourage all users to upgrade to take advantage of the changes. yt is a community-developed analysis and visualization toolkit, primarily directed at astrophysical hydrodynamics simulations. It provides full support for output from the Enzo, FLASH, Orion, and Nyx codes, with preliminary support for several others. It provides access to simulation data using an intuitive python interface, can perform many common visualization tasks, and offers a framework for conducting data reductions and analysis of simulation data. The most visible changes with the 2.5 release include: * Testing has been greatly expanded, including unit tests and answer testing. * The capabilities of the “Stream” frontend have been expanded. Uniform grid and AMR-based data can be read into memory, and particle fields can be initialized. * The install script now provides for the optional installation of SciPy and the Rockstar halo finder. * Surfaces can now be extracted and examined, as well as uploaded to Sketchfab.com for interactive visualization in a web browser. * Support for the Athena code has been added. * Many, many improvements to PlotWindow. * Coordinate transformations have been sped up and streamlined, as well as cylindrical and spherical fields. * Increased support for the IPython notebook. * Improved support for FLASH particle fields. * The volume rendering backend has been updated to use an alpha channel, fixing parallel opaque volume renderings. * The AMRKDTree has been rewritten, allowing parallelism with other than power-of-2 MPI processes, arbitrary sets of grids, and splitting of unigrids. For a complete list of changes in this release, please visit the Changelog (http://yt-project.org/docs/2.5/changelog.html). Information about the yt project, including installation instructions, can be found on the homepage: http://yt-project.org/ Development of yt has been sponsored by the NSF, the DOE, and various universities. We develop yt in the open and encourage contributions from users who extend and improve the code. We invite you to get involved with developing and using yt! Please forward this announcement to other interested parties. Sincerely, The yt development team

2 1

Test for field
by Elizabeth Tasker March 1, 2013

March 1, 2013

Hi, I want to test if a data set at particles. I thought: pf.has_key("particle_type") would work, but oddly it doesn't since: In [17]: pf.has_key("particle_type") Out[17]: False yet: In [4]: dd = pf.h.all_data() In [5]: dd["particle_type"] yt : [INFO ] 2013-02-23 17:00:43,826 Getting particle_type using ParticleIO Out[5]: array([11, 11, 11, ..., 11, 11, 11]) Shouldn't pf.has_key("particle_type") be true in this case? Elizabeth

3 3