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May 2016

25 participants
39 discussions

LightRay class
by Fei Li 12 May '16

12 May '16

Hello yt users, I tried to use the LightRay class to generate a light ray for one of my gridded simulation snapshots. The simulation is from the FIRE project which used a heavily modified version of Gadget-3 called GIZMO written by Phil Hopkins. And the error I got is: ValueError: need more than 1 value to unpack. Here is my script: $ python Python 2.7.11 |Continuum Analytics, Inc.| (default, Dec 6 2015, 18:08:32) [GCC 4.4.7 20120313 (Red Hat 4.4.7-1)] on linux2 Type "help", "copyright", "credits" or "license" for more information. Anaconda is brought to you by Continuum Analytics. Please check out: http://continuum.io/thanks and https://anaconda.org >>> import yt >>> import trident >>> fn='/cita/h/home-2/fli/FIRE/grid_190_256.hdf5' >>> light_ray=trident.LightRay(fn,simulation_type='Gadget') Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/home/fli/opt/yt-conda/lib/python2.7/site-packages/yt/analysis_modules/cosmological_observation/light_ray/light_ray.py", line 152, in __init__ find_outputs=find_outputs) File "/home/fli/opt/yt-conda/lib/python2.7/site-packages/yt/analysis_modules/cosmological_observation/cosmology_splice.py", line 34, in __init__ find_outputs=find_outputs) File "/home/fli/opt/yt-conda/lib/python2.7/site-packages/yt/convenience.py", line 153, in simulation find_outputs=find_outputs) File "/home/fli/opt/yt-conda/lib/python2.7/site-packages/yt/frontends/gadget/simulation_handling.py", line 75, in __init__ find_outputs=find_outputs) File "/home/fli/opt/yt-conda/lib/python2.7/site-packages/yt/data_objects/time_series.py", line 414, in __init__ self._parse_parameter_file() File "/home/fli/opt/yt-conda/lib/python2.7/site-packages/yt/frontends/gadget/simulation_handling.py", line 289, in _parse_parameter_file param, vals = (i.strip() for i in line.split(None, 1)) ValueError: need more than 1 value to unpack Thanks for your help, Fei Li

2 1

Camera/Off Axis Optioons
by Sushilkumar 12 May '16

12 May '16

Dear Suoqing JI: I tried with both factor=1 and deleting the ::factor (yt_frb_offaxis.py) but the same issue still persist (L(1,0,0) N(0,1,1).png). The only difference being that without the "factor" it takes longer time to compute than for a "factor=20". For same data if I use "slc.annoate_streamline" gives approximately proper results (UniformGridData_Slice_y_field_x_t000.png) but without the offaxis Any suggestions. Thanks in advance https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc -- *SK2* *"**Claiming that something can move faster than light is a good conversation-stopper in physics. People edge away from you in cocktail parties; friends never return phone calls. You just don’t mess with Albert Einstein.**"*

2 1

using yt notebook in remote computer node
by Jiang, Yanfei 12 May '16

12 May '16

Hi, I am trying to use yt to analyze some data in a remote supercomputer. I can launch yt notebook in the login node and forward the port to my local computer so that I can view the results in my local web browser. However, when I submit an interactive job in the compute node, I can only forward the port to the login node. Do you know anyway to forward the port again to my local computer so that I can still use jupyter notebook in my web browser to look at the data? Thank you. -- Yan-Fei Jiang Einstein Fellow Harvard-Smithsonian Center for Astrophysics 60 Garden Street, Cambridge MA USA 02138

3 3

AMR grid creation in spherical coordinates
by Andrea Negri 11 May '16

11 May '16

Hi all, I'm trying to build an AMR in yt in spherical coordinates. I was able to it in the following code. But I have a couple of questions. There is something I don't understand: except for the level 0 grid, the right_edge arrays seems to be useless... In addition, as you can notice the number of grids in theta direction increased as a factor of 5. Is there a way to preserve the number of grid in theta (and in phi) from level 0 to level 1? import numpy as np import yt refine_by=5 top_grid_dim = [100, 10, 2] n1=100 n2=10 n3=2 grid_data = [ dict(left_edge = [0.0, 0.0, 0.0], right_edge = [1.0, np.pi, np.pi*2.], level = 0, dimensions = [n1, n2, n3]), dict(left_edge = [0., 0., 0.], right_edge = [0.5, np.pi, np.pi*2.], level = 1, dimensions = [n1, n2*refine_by, n3*refine_by]), ] for g in grid_data: g["density"] = (np.random.random(g["dimensions"]), "g/cm**3") ds = yt.load_amr_grids(grid_data, top_grid_dim , geometry='spherical', refine_by=refine_by, length_unit='kpc') ds.print_stats() yt.SlicePlot(ds, 'phi', 'density').save() yt.SlicePlot(ds, 'theta', 'density').save() yt.SlicePlot(ds, 'r', 'density').save()

2 1

load structured mesh
by Andrea Negri 11 May '16

11 May '16

Hi all, I'm trying to read ZEUS-MP 2 data, and I'm building my programs step by step. I was able to load data regularly spaced in spherical coordinates. However, I actually have a non-uniform radial grid. I tried with the script in attachment, but I have got odd errors... Also, I have found this page, is it relevant for my case (just because my code is mentioned, the answer would be yes :) )? https://bitbucket.org/yt_analysis/grid_data_format Thanks, Andrea

5 9

Camera/Off Axis Options
by Sushilkumar 10 May '16

10 May '16

Dear Suoqing Ji: Thank you. Can I use the same script for my 2d streamline plots? I used plt.streamplot(X[::factor, ::factor], Y[::factor, ::factor], U[::factor, ::factor], V[::factor, ::factor],norm='True') but the issue still persist with normalization (script yt_frb_offaxis.py and plot L(1,0,0) N(0,1,1).png). Without the off axis slice the streamline plot looks proper (UniformGridData_Slice_y_field_x_t000.png) Thanks in advance https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc On Mon, May 9, 2016 at 7:38 PM, Sushilkumar <sushil.sush19us(a)gmail.com> wrote: > Dear Suoqing Ji: > > Thank you. Can I use the same script for my 2d streamline plots? > > I used plt.streamplot(X[::factor, ::factor], Y[::factor, ::factor], > U[::factor, ::factor], V[::factor, ::factor],norm='True') but the issue > still persist with normalization (script yt_frb_offaxis.py and plot > L(1,0,0) N(0,1,1).png). > > Without the off axis slice the streamline plot looks proper > (UniformGridData_Slice_y_field_x_t000.png) > > Thanks in advance > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc > > > > > On Mon, May 9, 2016 at 12:59 PM, <yt-users-request(a)lists.spacepope.org> > wrote: > >> Send yt-users mailing list submissions to >> yt-users(a)lists.spacepope.org >> >> To subscribe or unsubscribe via the World Wide Web, visit >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org >> or, via email, send a message with subject or body 'help' to >> yt-users-request(a)lists.spacepope.org >> >> You can reach the person managing the list at >> yt-users-owner(a)lists.spacepope.org >> >> When replying, please edit your Subject line so it is more specific >> than "Re: Contents of yt-users digest..." >> >> >> Today's Topics: >> >> 1. Re: Camera/Off Axis Options (Suoqing Ji) >> >> >> ---------------------------------------------------------------------- >> >> Message: 1 >> Date: Mon, 9 May 2016 10:59:38 -0700 >> From: Suoqing Ji <suoqing(a)physics.ucsb.edu> >> To: Discussion of the yt analysis package >> <yt-users(a)lists.spacepope.org> >> Subject: Re: [yt-users] Camera/Off Axis Options >> Message-ID: <4CE58756-CEBD-42D3-B2D7-8C91D6E36B28(a)physics.ucsb.edu> >> Content-Type: text/plain; charset="utf-8" >> >> Hi Sushil, >> >> I think this is normal ? the empty cells suggest the area plotted is out >> of your simulation domain. You could zoom in to avoid the empty cell being >> plotted. >> >> Best wishes, >> -- >> Suoqing JI >> Ph.D Candidate >> Department of Physics >> University of California, Santa Barbara >> http://web.physics.ucsb.edu/~suoqing >> >> > On May 9, 2016, at 9:23 AM, Sushilkumar <sushil.sush19us(a)gmail.com> >> wrote: >> > >> > Dear Suoqing Ji: >> > >> > I was able to include the off axis using frb options (script >> yt_frb_offaxis.py on drive link) >> > >> > But it gives me a plot with its edges chopped. For example L(1,0,0) >> N(0,1,1).png and L(1,0,1) N(0,1,1).png have empty cells on the edges. I >> should not have empty cells as all of the cells are filled like L(1,0,0) >> N(0,0,1).png. Since only the viewing angle is changed it should still fill >> all the cells. >> > >> > I tried it for different angles as well but there are always some empty >> cells present for every off axis slices. >> > >> > Can you suggest wherein these edges are not empty and have quiver >> vectors? >> > >> > Thanks in advance. >> > >> > >> > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> >> > >> > >> > >> > >> > On Thu, May 5, 2016 at 8:22 PM, <yt-users-request(a)lists.spacepope.org >> <mailto:yt-users-request@lists.spacepope.org>> wrote: >> > Send yt-users mailing list submissions to >> > yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> >> > >> > To subscribe or unsubscribe via the World Wide Web, visit >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org >> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> >> > or, via email, send a message with subject or body 'help' to >> > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> >> > >> > You can reach the person managing the list at >> > yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org> >> > >> > When replying, please edit your Subject line so it is more specific >> > than "Re: Contents of yt-users digest..." >> > >> > >> > Today's Topics: >> > >> > 1. Re: Camera/Off Axis Options (Suoqing Ji) >> > >> > >> > ---------------------------------------------------------------------- >> > >> > Message: 1 >> > Date: Thu, 5 May 2016 18:19:51 -0700 >> > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: >> suoqing(a)physics.ucsb.edu>> >> > To: Discussion of the yt analysis package >> > <yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org>> >> > Subject: Re: [yt-users] Camera/Off Axis Options >> > Message-ID: <CF41248A-0BEA-4CF7-A2FE-DA7ECA15B0AE(a)physics.ucsb.edu >> <mailto:CF41248A-0BEA-4CF7-A2FE-DA7ECA15B0AE@physics.ucsb.edu>> >> > Content-Type: text/plain; charset="utf-8" >> > >> > Great! You could switch to linear or symlog normalization for >> non-positive values. >> > >> > Best wishes, >> > -- >> > Suoqing JI >> > Ph.D Candidate >> > Department of Physics >> > University of California, Santa Barbara >> > http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing> >> > >> > > On May 5, 2016, at 6:02 PM, Sushilkumar <sushil.sush19us(a)gmail.com >> <mailto:sushil.sush19us@gmail.com>> wrote: >> > > >> > > Dear Suoqing Ji: >> > > >> > > Think I was able to overcome the previous error and currently running >> without any errors (however a few warnings do show up). >> > > >> > > I would have to test a few cases before I can confirm on the same. >> > > >> > > Thanks in advance. >> > > >> > > >> > > >> > > >> > > >> > > On Thu, May 5, 2016 at 7:44 PM, <yt-users-request(a)lists.spacepope.org >> <mailto:yt-users-request@lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>>> wrote: >> > > Send yt-users mailing list submissions to >> > > yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> >> > > >> > > To subscribe or unsubscribe via the World Wide Web, visit >> > > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> >> > > or, via email, send a message with subject or body 'help' to >> > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>> >> > > >> > > You can reach the person managing the list at >> > > yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org> <mailto: >> yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org>> >> > > >> > > When replying, please edit your Subject line so it is more specific >> > > than "Re: Contents of yt-users digest..." >> > > >> > > >> > > Today's Topics: >> > > >> > > 1. Camera/Off Axis Options (Sushilkumar) >> > > >> > > >> > > ---------------------------------------------------------------------- >> > > >> > > Message: 1 >> > > Date: Thu, 5 May 2016 19:44:22 -0500 >> > > From: Sushilkumar <sushil.sush19us(a)gmail.com <mailto: >> sushil.sush19us(a)gmail.com> <mailto:sushil.sush19us@gmail.com <mailto: >> sushil.sush19us(a)gmail.com>>> >> > > To: Discussion of the yt analysis package >> > > <yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>>> >> > > Subject: [yt-users] Camera/Off Axis Options >> > > Message-ID: >> > > <CAKARaKUGCFF1L2x+AcsinaA1M2dEksTO= >> 0_WuVjJaporyGc6sg(a)mail.gmail.com <mailto:0_WuVjJaporyGc6sg@mail.gmail.com> >> <mailto:0_WuVjJaporyGc6sg@mail.gmail.com <mailto: >> 0_WuVjJaporyGc6sg(a)mail.gmail.com>>> >> > > Content-Type: text/plain; charset="utf-8" >> > > >> > > Dear Suoqing Ji: >> > > >> > > For the frb off axis I get the below error. The script >> (yt_frb_offaxis.py) >> > > for your reference is available on the drive link. >> > > >> > > Thanks in advance >> > > >> > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> >> > > >> > > >> > > >> > > Error: >> > > >> > > Traceback (most recent call last): >> > > File "yt_frb_offaxis.py", line 63, in <module> >> > > plt.colorbar() >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/pyplot.py", >> > > line 2237, in colorbar >> > > ret = gcf().colorbar(mappable, cax = cax, ax=ax, **kw) >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/figure.py", >> > > line 1569, in colorbar >> > > cb = cbar.colorbar_factory(cax, mappable, **kw) >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", >> > > line 1330, in colorbar_factory >> > > cb = Colorbar(cax, mappable, **kwargs) >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", >> > > line 905, in __init__ >> > > ColorbarBase.__init__(self, ax, **kw) >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", >> > > line 323, in __init__ >> > > self.draw_all() >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", >> > > line 348, in draw_all >> > > self._config_axes(X, Y) >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", >> > > line 444, in _config_axes >> > > self.update_ticks() >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", >> > > line 373, in update_ticks >> > > ticks, ticklabels, offset_string = self._ticker() >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", >> > > line 594, in _ticker >> > > b = np.array(locator()) >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/ticker.py", >> > > line 1535, in __call__ >> > > return self.tick_values(vmin, vmax) >> > > File >> > > >> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/ticker.py", >> > > line 1553, in tick_values >> > > "Data has no positive values, and therefore can not be " >> > > ValueError: Data has no positive values, and therefore can not be >> > > log-scaled. >> > > >> > > >> > > On Thu, May 5, 2016 at 3:09 PM, <yt-users-request(a)lists.spacepope.org >> <mailto:yt-users-request@lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>>> >> > > wrote: >> > > >> > > > Send yt-users mailing list submissions to >> > > > yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> >> > > > >> > > > To subscribe or unsubscribe via the World Wide Web, visit >> > > > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> >> > > > or, via email, send a message with subject or body 'help' to >> > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>> >> > > > >> > > > You can reach the person managing the list at >> > > > yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org> <mailto: >> yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org>> >> > > > >> > > > When replying, please edit your Subject line so it is more specific >> > > > than "Re: Contents of yt-users digest..." >> > > > >> > > > >> > > > Today's Topics: >> > > > >> > > > 1. Re: Camera/Off Axis Options (Suoqing Ji) >> > > > >> > > > >> > > > >> ---------------------------------------------------------------------- >> > > > >> > > > Message: 1 >> > > > Date: Thu, 5 May 2016 13:09:35 -0700 >> > > > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: >> suoqing(a)physics.ucsb.edu> <mailto:suoqing@physics.ucsb.edu <mailto: >> suoqing(a)physics.ucsb.edu>>> >> > > > To: Discussion of the yt analysis package >> > > > <yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>>> >> > > > Subject: Re: [yt-users] Camera/Off Axis Options >> > > > Message-ID: <CFD3270F-3DD0-42FB-A13C-7AF897B410DA(a)physics.ucsb.edu >> <mailto:CFD3270F-3DD0-42FB-A13C-7AF897B410DA@physics.ucsb.edu> <mailto: >> CFD3270F-3DD0-42FB-A13C-7AF897B410DA(a)physics.ucsb.edu <mailto: >> CFD3270F-3DD0-42FB-A13C-7AF897B410DA(a)physics.ucsb.edu>>> >> > > > Content-Type: text/plain; charset="utf-8" >> > > > >> > > > Hi Sushil, >> > > > >> > > > It?s a derived field and will be automatically computed by yt based >> on >> > > > three components of velocity field. You could replace it to any >> other >> > > > fields you want. >> > > > >> > > > Best wishes, >> > > > -- >> > > > Suoqing JI >> > > > Ph.D Candidate >> > > > Department of Physics >> > > > University of California, Santa Barbara >> > > > http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing> < >> http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing>> >> > > > >> > > > > On May 5, 2016, at 1:07 PM, Sushilkumar < >> sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com> <mailto: >> sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com>>> >> > > > wrote: >> > > > > >> > > > > Dear Suoqing Ji: >> > > > > >> > > > > In your draft script what field does 'velocity_magnitude' refer >> to? I do >> > > > not have a field that correspond to magnitude. >> > > > > >> > > > > On Mon, May 2, 2016 at 6:19 PM, < >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>> >> > > > <mailto:yt-users-request@lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>>>> wrote: >> > > > > Send yt-users mailing list submissions to >> > > > > yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >>> >> > > > > >> > > > > To subscribe or unsubscribe via the World Wide Web, visit >> > > > > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> >> > > > > or, via email, send a message with subject or body 'help' to >> > > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>> <mailto: >> > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>>> >> > > > > >> > > > > You can reach the person managing the list at >> > > > > yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org> <mailto: >> yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org>> <mailto: >> > > > yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org> <mailto: >> yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org>>> >> > > > > >> > > > > When replying, please edit your Subject line so it is more >> specific >> > > > > than "Re: Contents of yt-users digest..." >> > > > > >> > > > > >> > > > > Today's Topics: >> > > > > >> > > > > 1. Re: Camera/Off Axis Options (Suoqing Ji) >> > > > > 2. Re: load structured mesh (Andrea Negri) >> > > > > >> > > > > >> > > > > >> ---------------------------------------------------------------------- >> > > > > >> > > > > Message: 1 >> > > > > Date: Mon, 2 May 2016 13:42:32 -0700 >> > > > > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: >> suoqing(a)physics.ucsb.edu> <mailto:suoqing@physics.ucsb.edu <mailto: >> suoqing(a)physics.ucsb.edu>> <mailto: >> > > > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu> <mailto: >> suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>>>> >> > > > > To: Discussion of the yt analysis package >> > > > > <yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >>>> >> > > > > Subject: Re: [yt-users] Camera/Off Axis Options >> > > > > Message-ID: < >> 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu <mailto: >> 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu> <mailto: >> 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu <mailto: >> 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu>> >> > > > <mailto:820FD28B-2CB2-4131-AD64-0A07990F5055@physics.ucsb.edu >> <mailto:820FD28B-2CB2-4131-AD64-0A07990F5055@physics.ucsb.edu> <mailto: >> 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu <mailto: >> 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu>>>> >> > > > > Content-Type: text/plain; charset="utf-8" >> > > > > >> > > > > Hi Sushil, >> > > > > >> > > > > What you can do currently is to get the data from fixed resolution >> > > > buffer and make the plot with quiver callback in matplotlib. The >> following >> > > > is a basic draft for this: >> > > > > >> > > > > L = [1, -1, 0] >> > > > > north_vector = [0, 0, 1] >> > > > > slc = yt.OffAxisSlicePlot(ds, L, 'cutting_plane_velocity_x', >> > > > center=[0,0,0], width=(180,'km'), north_vector=north_vector) >> > > > > >> > > > > # Now get the fixed resolution buffer >> > > > > vel = slc._frb['velocity_magnitude?] >> > > > > U = slc._frb['cutting_plane_velocity_x'] >> > > > > V = slc._frb['cutting_plane_velocity_y'] >> > > > > >> > > > > extentx = [slc.xlim[i].in_units('km') for i in (0, 1)] >> > > > > extenty = [slc.ylim[i].in_units('km') for i in (0, 1)] >> > > > > extent = extentx + extenty >> > > > > >> > > > > x = np.linspace(extentx[0], extentx[1], vel.shape[0]) >> > > > > y = np.linspace(extenty[1], extenty[0], vel.shape[1]) >> > > > > >> > > > > X, Y = np.meshgrid(x, y) >> > > > > >> > > > > normalize = True >> > > > > if normalize is True: >> > > > > N = np.sqrt(U**2+V**2) >> > > > > U /= N >> > > > > V /= N >> > > > > >> > > > > norm = matplotlib.colors.LogNorm(vmin=vel.min(), vmax=vel.max()) >> > > > > factor = 40 >> > > > > >> > > > > plt.quiver(X[::factor, ::factor], Y[::factor, ::factor], >> U[::factor, >> > > > ::factor], V[::factor, ::factor]) >> > > > > plt.imshow(vel.d, extent=extent, norm=norm) >> > > > > plt.colorbar() >> > > > > plt.savefig('quiver_plot.png') >> > > > > >> > > > > Best wishes, >> > > > > -- >> > > > > Suoqing JI >> > > > > Ph.D Candidate >> > > > > Department of Physics >> > > > > University of California, Santa Barbara >> > > > > http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing> < >> http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing>> < >> > > > http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing> < >> http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing>>> >> > > > > >> > > > > > On Apr 30, 2016, at 4:04 PM, Sushilkumar < >> sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com> <mailto: >> sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com>> >> > > > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com> >> <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>>>> >> wrote: >> > > > > > >> > > > > > Dear Suoqing Ji: >> > > > > > >> > > > > > Thanks. In the meanwhile can you suggest any alternate >> function/method >> > > > in yt that I can use for my vector plots? >> > > > > > >> > > > > > I also have a 3d (streamlines_t000.png) and 2d streamline plot >> > > > (UniformGridData_Slice_y_field_x_t000.png), which needs to treated >> in the >> > > > same way. Can you suggest any approach for these plots? >> > > > > > >> > > > > > Drive link: >> > > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < >> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> < >> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < >> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>> >> > > > > > >> > > > > > >> > > > > > Thanks in advance >> > > > > > >> > > > > > >> > > > > > >> > > > > > On Sat, Apr 30, 2016 at 12:56 PM, < >> > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>> <mailto: >> > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>>> <mailto: >> > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>> <mailto: >> > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>>>>> wrote: >> > > > > > Send yt-users mailing list submissions to >> > > > > > yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org>>> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >> >> > > > <mailto:yt-users@lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>>>> >> > > > > > >> > > > > > To subscribe or unsubscribe via the World Wide Web, visit >> > > > > > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> >> > > > <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>> >> > > > > > or, via email, send a message with subject or body 'help' to >> > > > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>> <mailto: >> > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>>> <mailto: >> > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>> <mailto: >> > > > yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org> <mailto: >> yt-users-request(a)lists.spacepope.org <mailto: >> yt-users-request(a)lists.spacepope.org>>>> >> > > > > > >> > > > > > You can reach the person managing the list at >> > > > > > yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org> <mailto: >> yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org>> <mailto: >> > > > yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org> <mailto: >> yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org>>> <mailto: >> > > > yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org> <mailto: >> yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org>> <mailto: >> > > > yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org> <mailto: >> yt-users-owner(a)lists.spacepope.org <mailto: >> yt-users-owner(a)lists.spacepope.org>>>> >> > > > > > >> > > > > > When replying, please edit your Subject line so it is more >> specific >> > > > > > than "Re: Contents of yt-users digest..." >> > > > > > >> > > > > > >> > > > > > Today's Topics: >> > > > > > >> > > > > > 1. Re: Camera/Off Axis Options (Suoqing Ji) >> > > > > > >> > > > > > >> > > > > > >> ---------------------------------------------------------------------- >> > > > > > >> > > > > > Message: 1 >> > > > > > Date: Fri, 29 Apr 2016 12:35:04 -0700 >> > > > > > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: >> suoqing(a)physics.ucsb.edu> <mailto:suoqing@physics.ucsb.edu <mailto: >> suoqing(a)physics.ucsb.edu>> <mailto: >> > > > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu> <mailto: >> suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>>> <mailto: >> suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu> <mailto: >> suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>> <mailto: >> > > > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu> <mailto: >> suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>>>>> >> > > > > > To: Discussion of the yt analysis package >> > > > > > <yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org>>> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >> >> > > > <mailto:yt-users@lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>>>>> >> > > > > > Subject: Re: [yt-users] Camera/Off Axis Options >> > > > > > Message-ID: < >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu> <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu>> >> > > > <mailto:9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78@physics.ucsb.edu >> <mailto:9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78@physics.ucsb.edu> <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu>>> <mailto: >> > > > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu> <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu>> <mailto: >> > > > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu> <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: >> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu>>>>> >> > > > > > Content-Type: text/plain; charset="us-ascii" >> > > > > > >> > > > > > Hi Sushil, >> > > > > > >> > > > > > I was able to reproduce your error and created an issue here: >> > > > >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> >> >> > > > < >> > > > >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> >>> >> > > > < >> > > > >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> >> >> > > > < >> > > > >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> >>>> >> > > > < >> > > > >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> >> >> > > > < >> > > > >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> >>> >> > > > < >> > > > >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> >> >> > > > < >> > > > >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> < >> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… >> >> >> > > > >>> >> > > > > > >> > > > > > Best wishes, >> > > > > > -- >> > > > > > Suoqing JI >> > > > > > Ph.D Candidate >> > > > > > Department of Physics >> > > > > > University of California, Santa Barbara >> > > > > > http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing> < >> http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing>> < >> > > > http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing> < >> http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing>>> < >> > > > http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing> < >> http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing>> < >> http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing> < >> http://web.physics.ucsb.edu/~suoqing < >> http://web.physics.ucsb.edu/~suoqing>> >> > > > >> >> > > > > > >> > > > > > > On Apr 28, 2016, at 7:17 PM, Sushilkumar < >> sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com> <mailto: >> sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com>> >> > > > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com> >> <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>>> >> <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com> >> <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>> >> > > > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com> >> <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>>>>> >> wrote: >> > > > > > > >> > > > > > > Dear Suoqing Ji: >> > > > > > > >> > > > > > > With a combination of center [0,0,0] and adjusting the width >> w, I >> > > > was able to eliminate all the warnings mentioned earlier. But the >> off axis >> > > > slice plots still wont give me a desired result. >> > > > > > > >> > > > > > > Plot available on the drive below below. >> > > > > > > >> > > > > > > The two plots L(010),N(0,0,1).png and L(101),N(001).png are >> plotted >> > > > for x-z plane and viewing angle of 45 degrees but both are >> drastically >> > > > different from each other. In fact the off axis slice plots >> > > > (L(101),N(001).png) is not in the x-z plane either. >> > > > > > > >> > > > > > > I am aiming for a plot similar to vector_rotate.png which is >> same as >> > > > vector_original.png but rotated/viewed at an angle. >> > > > > > > >> > > > > > > The vector_rotate.png was created using the python image >> library. I >> > > > was hoping if yt has any similar options with off axis which would >> tilt the >> > > > vector plots and fill all the vector grids (which cannot be done >> using PIL). >> > > > > > > >> > > > > > > The script (yt_velocity_fields.py) and sample data file >> > > > (Expl_Bt101.mtx.tar.gz) is available on drive link for your >> reference. >> > > > > > > >> > > > > > > Thanks in advance and my sincere apologies for repeated >> queries. But >> > > > this is extremely critical in reproducing my result and putting it >> for >> > > > publication. >> > > > > > > >> > > > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc >> <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < >> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> < >> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < >> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>> < >> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < >> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> < >> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < >> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < >> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>>> >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > >> > > > > > -------------- next part -------------- >> > > > > > An HTML attachment was scrubbed... >> > > > > > URL: < >> > > > >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> >> >> > > > < >> > > > >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> >>> >> > > > < >> > > > >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> >> >> > > > < >> > > > >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> >> >> > > > >>> >> > > > > > >> > > > > > ------------------------------ >> > > > > > >> > > > > > Subject: Digest Footer >> > > > > > >> > > > > > _______________________________________________ >> > > > > > yt-users mailing list >> > > > > > yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >>> >> > > > <mailto:yt-users@lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >> >> > > > >> >> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org >> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>> >> > > > > > >> > > > > > >> > > > > > ------------------------------ >> > > > > > >> > > > > > End of yt-users Digest, Vol 98, Issue 43 >> > > > > > **************************************** >> > > > > > >> > > > > > >> > > > > > >> > > > > > -- >> > > > > > SK2 >> > > > > > >> > > > > > "Claiming that something can move faster than light is a good >> > > > conversation-stopper in physics. People edge away from you in >> cocktail >> > > > parties; friends never return phone calls. You just don?t mess with >> Albert >> > > > Einstein." >> > > > > > >> > > > > > _______________________________________________ >> > > > > > yt-users mailing list >> > > > > > yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >>> >> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org >> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> >> > > > > >> > > > > -------------- next part -------------- >> > > > > An HTML attachment was scrubbed... >> > > > > URL: < >> > > > >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> >> >> > > > < >> > > > >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> >> >> > > > >> >> > > > > >> > > > > ------------------------------ >> > > > > >> > > > > Message: 2 >> > > > > Date: Tue, 3 May 2016 01:18:38 +0200 >> > > > > From: Andrea Negri <negri.andre(a)gmail.com <mailto: >> negri.andre(a)gmail.com> <mailto:negri.andre@gmail.com <mailto: >> negri.andre(a)gmail.com>> <mailto:negri.andre@gmail.com <mailto: >> negri.andre(a)gmail.com> <mailto:negri.andre@gmail.com <mailto: >> negri.andre(a)gmail.com>> >> > > > >> >> > > > > To: Discussion of the yt analysis package >> > > > > <yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >>>> >> > > > > Subject: Re: [yt-users] load structured mesh >> > > > > Message-ID: >> > > > > < >> > > > CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com >> <mailto: >> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com> >> <mailto: >> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com >> <mailto: >> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com>> >> > > > <mailto: >> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com >> <mailto: >> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com> >> <mailto: >> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com >> <mailto: >> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com>> >> > > > >> >> > > > > Content-Type: text/plain; charset=UTF-8 >> > > > > >> > > > > Dear John, >> > > > > >> > > > > thanks for the suggestions. Do you know if the grid data format is >> > > > > compatible with a non uniform mesh? I was thinking of porting my >> > > > > outputs in this format. >> > > > > >> > > > > >> > > > > Cheers, >> > > > > Andrea >> > > > > >> > > > > On 2 May 2016 at 18:52, John Zuhone <jzuhone(a)gmail.com <mailto: >> jzuhone(a)gmail.com> <mailto:jzuhone@gmail.com <mailto:jzuhone@gmail.com>> >> <mailto: >> > > > jzuhone(a)gmail.com <mailto:jzuhone@gmail.com> <mailto: >> jzuhone(a)gmail.com <mailto:jzuhone@gmail.com>>>> wrote: >> > > > > > Hi Andrea, >> > > > > > >> > > > > > yt has some support for axisymmetric grids in 2D, so you won?t >> need to >> > > > convert to a 3D array. >> > > > > > >> > > > > > The bigger issue is the logarithmic grid spacing. This is >> currently >> > > > being worked on, but is in a very early state. Currently what it >> does is >> > > > use ?logr? as the coordinate instead of r, which may not be very >> ideal for >> > > > every situation. A lot of yt functionality is probably not >> compatible with >> > > > this way of doing things. >> > > > > > >> > > > > > Nevertheless, if you would like to explore it further, let us >> know. >> > > > > > >> > > > > > Best, >> > > > > > >> > > > > > John Z >> > > > > > >> > > > > >> On May 2, 2016, at 10:53 AM, Andrea Negri < >> negri.andre(a)gmail.com <mailto:negri.andre@gmail.com> <mailto: >> negri.andre(a)gmail.com <mailto:negri.andre@gmail.com>> >> > > > <mailto:negri.andre@gmail.com <mailto:negri.andre@gmail.com> >> <mailto:negri.andre@gmail.com <mailto:negri.andre@gmail.com>>>> wrote: >> > > > > >> >> > > > > >> Of course. I have a 2.5D simulation in spherical coordinates. >> It is >> > > > > >> axial symmetric, so the actual grid is 2D, r and theta. The >> grid is >> > > > > >> structured, the grid spacing in theta is constant, while the >> spacing >> > > > > >> in r follows a geometrical progression, i.e. dr[i+1] = dr[i] * >> factor, >> > > > > >> where factor is a constant. >> > > > > >> >> > > > > >> I don't know if yt supports axisymmetric grids, but I can >> bypass this >> > > > > >> issue by duplicating the 2D array into a 3D one. Sure, it is >> not >> > > > > >> efficient... >> > > > > >> >> > > > > >> My ultimate goal is to produce projections, off axis >> projections and >> > > > > >> mock X-ray observations. >> > > > > >> >> > > > > >> >> > > > > >> Thanks, >> > > > > >> Andrea >> > > > > >> >> > > > > >> On 2 May 2016 at 16:43, Nathan Goldbaum <nathan12343(a)gmail.com >> <mailto:nathan12343@gmail.com> <mailto:nathan12343@gmail.com <mailto: >> nathan12343(a)gmail.com>> >> > > > <mailto:nathan12343@gmail.com <mailto:nathan12343@gmail.com> >> <mailto:nathan12343@gmail.com <mailto:nathan12343@gmail.com>>>> wrote: >> > > > > >>> Can you share a little bit more detail about your grid >> structure? I >> > > > know >> > > > > >>> that support for log-radial bins is being worked on right >> now, for >> > > > example. >> > > > > >>> >> > > > > >>> On Mon, May 2, 2016 at 3:18 AM, Andrea Negri < >> negri.andre(a)gmail.com <mailto:negri.andre@gmail.com> <mailto: >> negri.andre(a)gmail.com <mailto:negri.andre@gmail.com>> >> > > > <mailto:negri.andre@gmail.com <mailto:negri.andre@gmail.com> >> <mailto:negri.andre@gmail.com <mailto:negri.andre@gmail.com>>>> wrote: >> > > > > >>>> >> > > > > >>>> Hi all, >> > > > > >>>> >> > > > > >>>> I'm trying to read ZEUS-MP 2 data, and I'm building my >> programs step >> > > > > >>>> by step. I was able to load data regularly spaced in >> spherical >> > > > > >>>> coordinates. However, I actually have a non-uniform radial >> grid. >> > > > > >>>> >> > > > > >>>> I tried with the script in attachment, but I have got odd >> errors... >> > > > > >>>> >> > > > > >>>> Also, I have found this page, is it relevant for my case >> (just >> > > > because >> > > > > >>>> my code is mentioned, the answer would be yes :) )? >> > > > > >>>> https://bitbucket.org/yt_analysis/grid_data_format < >> https://bitbucket.org/yt_analysis/grid_data_format> < >> https://bitbucket.org/yt_analysis/grid_data_format < >> https://bitbucket.org/yt_analysis/grid_data_format>> < >> > > > https://bitbucket.org/yt_analysis/grid_data_format < >> https://bitbucket.org/yt_analysis/grid_data_format> < >> https://bitbucket.org/yt_analysis/grid_data_format < >> https://bitbucket.org/yt_analysis/grid_data_format>>> >> > > > > >>>> >> > > > > >>>> >> > > > > >>>> Thanks, >> > > > > >>>> Andrea >> > > > > >>>> >> > > > > >>>> _______________________________________________ >> > > > > >>>> yt-users mailing list >> > > > > >>>> yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >>> >> > > > > >>>> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> >> > > > > >>>> >> > > > > >>> >> > > > > >>> >> > > > > >>> _______________________________________________ >> > > > > >>> yt-users mailing list >> > > > > >>> yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >>> >> > > > > >>> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> >> > > > > >>> >> > > > > >> _______________________________________________ >> > > > > >> yt-users mailing list >> > > > > >> yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >>> >> > > > > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org >> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> >> > > > > > >> > > > > > _______________________________________________ >> > > > > > yt-users mailing list >> > > > > > yt-users(a)lists.spacepope.org <mailto: >> yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org >> <mailto:yt-users@lists.spacepope.org>> <mailto: >> yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >>> >> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org >> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> >> > > > > >> > > > > >> > > > > ------------------------------ >> > > > > >> > > > > Subject: Digest Footer >> > > > > >> > > > > _______________________________________________ >> > > > > yt-users mailing list >> > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org>> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >>> >> > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> >> > > > > >> > > > > >> > > > > ------------------------------ >> > > > > >> > > > > End of yt-users Digest, Vol 99, Issue 3 >> > > > > *************************************** >> > > > > >> > > > > >> > > > > >> > > > > -- >> > > > > SK2 >> > > > > >> > > > > "Claiming that something can move faster than light is a good >> > > > conversation-stopper in physics. People edge away from you in >> cocktail >> > > > parties; friends never return phone calls. You just don?t mess with >> Albert >> > > > Einstein." >> > > > > >> > > > > _______________________________________________ >> > > > > yt-users mailing list >> > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >> >> > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> >> > > > >> > > > -------------- next part -------------- >> > > > An HTML attachment was scrubbed... >> > > > URL: < >> > > > >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> >> >> > > > > >> > > > >> > > > ------------------------------ >> > > > >> > > > Subject: Digest Footer >> > > > >> > > > _______________________________________________ >> > > > yt-users mailing list >> > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >> >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> >> > > > >> > > > >> > > > ------------------------------ >> > > > >> > > > End of yt-users Digest, Vol 99, Issue 15 >> > > > **************************************** >> > > > >> > > >> > > >> > > >> > > -- >> > > *SK2* >> > > >> > > *"**Claiming that something can move faster than light is a good >> > > conversation-stopper in physics. People edge away from you in cocktail >> > > parties; friends never return phone calls. You just don?t mess with >> Albert >> > > Einstein.**"* >> > > -------------- next part -------------- >> > > An HTML attachment was scrubbed... >> > > URL: < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> >>> >> > > >> > > ------------------------------ >> > > >> > > Subject: Digest Footer >> > > >> > > _______________________________________________ >> > > yt-users mailing list >> > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org >> >> >> > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> >> > > >> > > >> > > ------------------------------ >> > > >> > > End of yt-users Digest, Vol 99, Issue 16 >> > > **************************************** >> > > >> > > >> > > >> > > -- >> > > SK2 >> > > >> > > "Claiming that something can move faster than light is a good >> conversation-stopper in physics. People edge away from you in cocktail >> parties; friends never return phone calls. You just don?t mess with Albert >> Einstein." >> > > >> > > _______________________________________________ >> > > yt-users mailing list >> > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> >> > >> > -------------- next part -------------- >> > An HTML attachment was scrubbed... >> > URL: < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> >> >> > >> > ------------------------------ >> > >> > Subject: Digest Footer >> > >> > _______________________________________________ >> > yt-users mailing list >> > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> >> > >> > >> > ------------------------------ >> > >> > End of yt-users Digest, Vol 99, Issue 18 >> > **************************************** >> > >> > >> > >> > -- >> > SK2 >> > >> > "Claiming that something can move faster than light is a good >> conversation-stopper in physics. People edge away from you in cocktail >> parties; friends never return phone calls. You just don?t mess with Albert >> Einstein." >> > >> > _______________________________________________ >> > yt-users mailing list >> > yt-users(a)lists.spacepope.org >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org >> >> -------------- next part -------------- >> An HTML attachment was scrubbed... >> URL: < >> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… >> > >> >> ------------------------------ >> >> Subject: Digest Footer >> >> _______________________________________________ >> yt-users mailing list >> yt-users(a)lists.spacepope.org >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org >> >> >> ------------------------------ >> >> End of yt-users Digest, Vol 99, Issue 23 >> **************************************** >> > > > > -- > *SK2* > > *"**Claiming that something can move faster than light is a good > conversation-stopper in physics. People edge away from you in cocktail > parties; friends never return phone calls. You just don’t mess with Albert > Einstein.**"* > > -- *SK2* *"**Claiming that something can move faster than light is a good conversation-stopper in physics. People edge away from you in cocktail parties; friends never return phone calls. You just don’t mess with Albert Einstein.**"*

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Re: [yt-users] yt-users Digest, Vol 99, Issue 23
by Sushilkumar 10 May '16

10 May '16

Dear Suoqing Ji: Thank you. Can I use the same script for my 2d streamline plots? I used plt.streamplot(X[::factor, ::factor], Y[::factor, ::factor], U[::factor, ::factor], V[::factor, ::factor],norm='True') but the issue still persist with normalization (script yt_frb_offaxis.py and plot L(1,0,0) N(0,1,1).png). Without the off axis slice the streamline plot looks proper (UniformGridData_Slice_y_field_x_t000.png) Thanks in advance https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc On Mon, May 9, 2016 at 12:59 PM, <yt-users-request(a)lists.spacepope.org> wrote: > Send yt-users mailing list submissions to > yt-users(a)lists.spacepope.org > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > or, via email, send a message with subject or body 'help' to > yt-users-request(a)lists.spacepope.org > > You can reach the person managing the list at > yt-users-owner(a)lists.spacepope.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of yt-users digest..." > > > Today's Topics: > > 1. Re: Camera/Off Axis Options (Suoqing Ji) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Mon, 9 May 2016 10:59:38 -0700 > From: Suoqing Ji <suoqing(a)physics.ucsb.edu> > To: Discussion of the yt analysis package > <yt-users(a)lists.spacepope.org> > Subject: Re: [yt-users] Camera/Off Axis Options > Message-ID: <4CE58756-CEBD-42D3-B2D7-8C91D6E36B28(a)physics.ucsb.edu> > Content-Type: text/plain; charset="utf-8" > > Hi Sushil, > > I think this is normal ? the empty cells suggest the area plotted is out > of your simulation domain. You could zoom in to avoid the empty cell being > plotted. > > Best wishes, > -- > Suoqing JI > Ph.D Candidate > Department of Physics > University of California, Santa Barbara > http://web.physics.ucsb.edu/~suoqing > > > On May 9, 2016, at 9:23 AM, Sushilkumar <sushil.sush19us(a)gmail.com> > wrote: > > > > Dear Suoqing Ji: > > > > I was able to include the off axis using frb options (script > yt_frb_offaxis.py on drive link) > > > > But it gives me a plot with its edges chopped. For example L(1,0,0) > N(0,1,1).png and L(1,0,1) N(0,1,1).png have empty cells on the edges. I > should not have empty cells as all of the cells are filled like L(1,0,0) > N(0,0,1).png. Since only the viewing angle is changed it should still fill > all the cells. > > > > I tried it for different angles as well but there are always some empty > cells present for every off axis slices. > > > > Can you suggest wherein these edges are not empty and have quiver > vectors? > > > > Thanks in advance. > > > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> > > > > > > > > > > On Thu, May 5, 2016 at 8:22 PM, <yt-users-request(a)lists.spacepope.org > <mailto:yt-users-request@lists.spacepope.org>> wrote: > > Send yt-users mailing list submissions to > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> > > > > To subscribe or unsubscribe via the World Wide Web, visit > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> > > or, via email, send a message with subject or body 'help' to > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> > > > > You can reach the person managing the list at > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> > > > > When replying, please edit your Subject line so it is more specific > > than "Re: Contents of yt-users digest..." > > > > > > Today's Topics: > > > > 1. Re: Camera/Off Axis Options (Suoqing Ji) > > > > > > ---------------------------------------------------------------------- > > > > Message: 1 > > Date: Thu, 5 May 2016 18:19:51 -0700 > > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: > suoqing(a)physics.ucsb.edu>> > > To: Discussion of the yt analysis package > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org>> > > Subject: Re: [yt-users] Camera/Off Axis Options > > Message-ID: <CF41248A-0BEA-4CF7-A2FE-DA7ECA15B0AE(a)physics.ucsb.edu > <mailto:CF41248A-0BEA-4CF7-A2FE-DA7ECA15B0AE@physics.ucsb.edu>> > > Content-Type: text/plain; charset="utf-8" > > > > Great! You could switch to linear or symlog normalization for > non-positive values. > > > > Best wishes, > > -- > > Suoqing JI > > Ph.D Candidate > > Department of Physics > > University of California, Santa Barbara > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> > > > > > On May 5, 2016, at 6:02 PM, Sushilkumar <sushil.sush19us(a)gmail.com > <mailto:sushil.sush19us@gmail.com>> wrote: > > > > > > Dear Suoqing Ji: > > > > > > Think I was able to overcome the previous error and currently running > without any errors (however a few warnings do show up). > > > > > > I would have to test a few cases before I can confirm on the same. > > > > > > Thanks in advance. > > > > > > > > > > > > > > > > > > On Thu, May 5, 2016 at 7:44 PM, <yt-users-request(a)lists.spacepope.org > <mailto:yt-users-request@lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>> wrote: > > > Send yt-users mailing list submissions to > > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> > > > > > > To subscribe or unsubscribe via the World Wide Web, visit > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > or, via email, send a message with subject or body 'help' to > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> > > > > > > You can reach the person managing the list at > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>> > > > > > > When replying, please edit your Subject line so it is more specific > > > than "Re: Contents of yt-users digest..." > > > > > > > > > Today's Topics: > > > > > > 1. Camera/Off Axis Options (Sushilkumar) > > > > > > > > > ---------------------------------------------------------------------- > > > > > > Message: 1 > > > Date: Thu, 5 May 2016 19:44:22 -0500 > > > From: Sushilkumar <sushil.sush19us(a)gmail.com <mailto: > sushil.sush19us(a)gmail.com> <mailto:sushil.sush19us@gmail.com <mailto: > sushil.sush19us(a)gmail.com>>> > > > To: Discussion of the yt analysis package > > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>>> > > > Subject: [yt-users] Camera/Off Axis Options > > > Message-ID: > > > <CAKARaKUGCFF1L2x+AcsinaA1M2dEksTO= > 0_WuVjJaporyGc6sg(a)mail.gmail.com <mailto:0_WuVjJaporyGc6sg@mail.gmail.com> > <mailto:0_WuVjJaporyGc6sg@mail.gmail.com <mailto: > 0_WuVjJaporyGc6sg(a)mail.gmail.com>>> > > > Content-Type: text/plain; charset="utf-8" > > > > > > Dear Suoqing Ji: > > > > > > For the frb off axis I get the below error. The script > (yt_frb_offaxis.py) > > > for your reference is available on the drive link. > > > > > > Thanks in advance > > > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> > > > > > > > > > > > > Error: > > > > > > Traceback (most recent call last): > > > File "yt_frb_offaxis.py", line 63, in <module> > > > plt.colorbar() > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/pyplot.py", > > > line 2237, in colorbar > > > ret = gcf().colorbar(mappable, cax = cax, ax=ax, **kw) > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/figure.py", > > > line 1569, in colorbar > > > cb = cbar.colorbar_factory(cax, mappable, **kw) > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > > line 1330, in colorbar_factory > > > cb = Colorbar(cax, mappable, **kwargs) > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > > line 905, in __init__ > > > ColorbarBase.__init__(self, ax, **kw) > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > > line 323, in __init__ > > > self.draw_all() > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > > line 348, in draw_all > > > self._config_axes(X, Y) > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > > line 444, in _config_axes > > > self.update_ticks() > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > > line 373, in update_ticks > > > ticks, ticklabels, offset_string = self._ticker() > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > > line 594, in _ticker > > > b = np.array(locator()) > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/ticker.py", > > > line 1535, in __call__ > > > return self.tick_values(vmin, vmax) > > > File > > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/ticker.py", > > > line 1553, in tick_values > > > "Data has no positive values, and therefore can not be " > > > ValueError: Data has no positive values, and therefore can not be > > > log-scaled. > > > > > > > > > On Thu, May 5, 2016 at 3:09 PM, <yt-users-request(a)lists.spacepope.org > <mailto:yt-users-request@lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>> > > > wrote: > > > > > > > Send yt-users mailing list submissions to > > > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> > > > > > > > > To subscribe or unsubscribe via the World Wide Web, visit > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > or, via email, send a message with subject or body 'help' to > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> > > > > > > > > You can reach the person managing the list at > > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>> > > > > > > > > When replying, please edit your Subject line so it is more specific > > > > than "Re: Contents of yt-users digest..." > > > > > > > > > > > > Today's Topics: > > > > > > > > 1. Re: Camera/Off Axis Options (Suoqing Ji) > > > > > > > > > > > > > ---------------------------------------------------------------------- > > > > > > > > Message: 1 > > > > Date: Thu, 5 May 2016 13:09:35 -0700 > > > > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: > suoqing(a)physics.ucsb.edu> <mailto:suoqing@physics.ucsb.edu <mailto: > suoqing(a)physics.ucsb.edu>>> > > > > To: Discussion of the yt analysis package > > > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>>> > > > > Subject: Re: [yt-users] Camera/Off Axis Options > > > > Message-ID: <CFD3270F-3DD0-42FB-A13C-7AF897B410DA(a)physics.ucsb.edu > <mailto:CFD3270F-3DD0-42FB-A13C-7AF897B410DA@physics.ucsb.edu> <mailto: > CFD3270F-3DD0-42FB-A13C-7AF897B410DA(a)physics.ucsb.edu <mailto: > CFD3270F-3DD0-42FB-A13C-7AF897B410DA(a)physics.ucsb.edu>>> > > > > Content-Type: text/plain; charset="utf-8" > > > > > > > > Hi Sushil, > > > > > > > > It?s a derived field and will be automatically computed by yt based > on > > > > three components of velocity field. You could replace it to any other > > > > fields you want. > > > > > > > > Best wishes, > > > > -- > > > > Suoqing JI > > > > Ph.D Candidate > > > > Department of Physics > > > > University of California, Santa Barbara > > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> < > http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing > >> > > > > > > > > > On May 5, 2016, at 1:07 PM, Sushilkumar <sushil.sush19us(a)gmail.com > <mailto:sushil.sush19us@gmail.com> <mailto:sushil.sush19us@gmail.com > <mailto:sushil.sush19us@gmail.com>>> > > > > wrote: > > > > > > > > > > Dear Suoqing Ji: > > > > > > > > > > In your draft script what field does 'velocity_magnitude' refer > to? I do > > > > not have a field that correspond to magnitude. > > > > > > > > > > On Mon, May 2, 2016 at 6:19 PM, < > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> > > > > <mailto:yt-users-request@lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>>> wrote: > > > > > Send yt-users mailing list submissions to > > > > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >>> > > > > > > > > > > To subscribe or unsubscribe via the World Wide Web, visit > > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> > > > > > or, via email, send a message with subject or body 'help' to > > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> <mailto: > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>> > > > > > > > > > > You can reach the person managing the list at > > > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>> <mailto: > > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>>> > > > > > > > > > > When replying, please edit your Subject line so it is more specific > > > > > than "Re: Contents of yt-users digest..." > > > > > > > > > > > > > > > Today's Topics: > > > > > > > > > > 1. Re: Camera/Off Axis Options (Suoqing Ji) > > > > > 2. Re: load structured mesh (Andrea Negri) > > > > > > > > > > > > > > > > ---------------------------------------------------------------------- > > > > > > > > > > Message: 1 > > > > > Date: Mon, 2 May 2016 13:42:32 -0700 > > > > > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: > suoqing(a)physics.ucsb.edu> <mailto:suoqing@physics.ucsb.edu <mailto: > suoqing(a)physics.ucsb.edu>> <mailto: > > > > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu> <mailto: > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>>>> > > > > > To: Discussion of the yt analysis package > > > > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >>>> > > > > > Subject: Re: [yt-users] Camera/Off Axis Options > > > > > Message-ID: <820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu > <mailto:820FD28B-2CB2-4131-AD64-0A07990F5055@physics.ucsb.edu> <mailto: > 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu <mailto: > 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu>> > > > > <mailto:820FD28B-2CB2-4131-AD64-0A07990F5055@physics.ucsb.edu > <mailto:820FD28B-2CB2-4131-AD64-0A07990F5055@physics.ucsb.edu> <mailto: > 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu <mailto: > 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu>>>> > > > > > Content-Type: text/plain; charset="utf-8" > > > > > > > > > > Hi Sushil, > > > > > > > > > > What you can do currently is to get the data from fixed resolution > > > > buffer and make the plot with quiver callback in matplotlib. The > following > > > > is a basic draft for this: > > > > > > > > > > L = [1, -1, 0] > > > > > north_vector = [0, 0, 1] > > > > > slc = yt.OffAxisSlicePlot(ds, L, 'cutting_plane_velocity_x', > > > > center=[0,0,0], width=(180,'km'), north_vector=north_vector) > > > > > > > > > > # Now get the fixed resolution buffer > > > > > vel = slc._frb['velocity_magnitude?] > > > > > U = slc._frb['cutting_plane_velocity_x'] > > > > > V = slc._frb['cutting_plane_velocity_y'] > > > > > > > > > > extentx = [slc.xlim[i].in_units('km') for i in (0, 1)] > > > > > extenty = [slc.ylim[i].in_units('km') for i in (0, 1)] > > > > > extent = extentx + extenty > > > > > > > > > > x = np.linspace(extentx[0], extentx[1], vel.shape[0]) > > > > > y = np.linspace(extenty[1], extenty[0], vel.shape[1]) > > > > > > > > > > X, Y = np.meshgrid(x, y) > > > > > > > > > > normalize = True > > > > > if normalize is True: > > > > > N = np.sqrt(U**2+V**2) > > > > > U /= N > > > > > V /= N > > > > > > > > > > norm = matplotlib.colors.LogNorm(vmin=vel.min(), vmax=vel.max()) > > > > > factor = 40 > > > > > > > > > > plt.quiver(X[::factor, ::factor], Y[::factor, ::factor], > U[::factor, > > > > ::factor], V[::factor, ::factor]) > > > > > plt.imshow(vel.d, extent=extent, norm=norm) > > > > > plt.colorbar() > > > > > plt.savefig('quiver_plot.png') > > > > > > > > > > Best wishes, > > > > > -- > > > > > Suoqing JI > > > > > Ph.D Candidate > > > > > Department of Physics > > > > > University of California, Santa Barbara > > > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> < > http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing>> > < > > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> < > http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing > >>> > > > > > > > > > > > On Apr 30, 2016, at 4:04 PM, Sushilkumar < > sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com> <mailto: > sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com>> > > > > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com> > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>>>> > wrote: > > > > > > > > > > > > Dear Suoqing Ji: > > > > > > > > > > > > Thanks. In the meanwhile can you suggest any alternate > function/method > > > > in yt that I can use for my vector plots? > > > > > > > > > > > > I also have a 3d (streamlines_t000.png) and 2d streamline plot > > > > (UniformGridData_Slice_y_field_x_t000.png), which needs to treated > in the > > > > same way. Can you suggest any approach for these plots? > > > > > > > > > > > > Drive link: > > > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> < > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>> > > > > > > > > > > > > > > > > > > Thanks in advance > > > > > > > > > > > > > > > > > > > > > > > > On Sat, Apr 30, 2016 at 12:56 PM, < > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> <mailto: > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>> <mailto: > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> <mailto: > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>>>> wrote: > > > > > > Send yt-users mailing list submissions to > > > > > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org>>> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > > <mailto:yt-users@lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>>>> > > > > > > > > > > > > To subscribe or unsubscribe via the World Wide Web, visit > > > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>> > > > > > > or, via email, send a message with subject or body 'help' to > > > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> <mailto: > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>> <mailto: > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> <mailto: > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>>> > > > > > > > > > > > > You can reach the person managing the list at > > > > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>> <mailto: > > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>>> <mailto: > > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>> <mailto: > > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>>>> > > > > > > > > > > > > When replying, please edit your Subject line so it is more > specific > > > > > > than "Re: Contents of yt-users digest..." > > > > > > > > > > > > > > > > > > Today's Topics: > > > > > > > > > > > > 1. Re: Camera/Off Axis Options (Suoqing Ji) > > > > > > > > > > > > > > > > > > > ---------------------------------------------------------------------- > > > > > > > > > > > > Message: 1 > > > > > > Date: Fri, 29 Apr 2016 12:35:04 -0700 > > > > > > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: > suoqing(a)physics.ucsb.edu> <mailto:suoqing@physics.ucsb.edu <mailto: > suoqing(a)physics.ucsb.edu>> <mailto: > > > > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu> <mailto: > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>>> <mailto: > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu> <mailto: > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>> <mailto: > > > > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu> <mailto: > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>>>>> > > > > > > To: Discussion of the yt analysis package > > > > > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org>>> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > > <mailto:yt-users@lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>>>>> > > > > > > Subject: Re: [yt-users] Camera/Off Axis Options > > > > > > Message-ID: < > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu> <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu>> > > > > <mailto:9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78@physics.ucsb.edu > <mailto:9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78@physics.ucsb.edu> <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu>>> <mailto: > > > > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu> <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu>> <mailto: > > > > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu> <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu>>>>> > > > > > > Content-Type: text/plain; charset="us-ascii" > > > > > > > > > > > > Hi Sushil, > > > > > > > > > > > > I was able to reproduce your error and created an issue here: > > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >> > > > > < > > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >>> > > > > < > > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >> > > > > < > > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >>>> > > > > < > > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >> > > > > < > > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >>> > > > > < > > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >> > > > > < > > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a…> > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >> > > > > >>> > > > > > > > > > > > > Best wishes, > > > > > > -- > > > > > > Suoqing JI > > > > > > Ph.D Candidate > > > > > > Department of Physics > > > > > > University of California, Santa Barbara > > > > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> < > http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing>> > < > > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> < > http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing>>> > < > > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> < > http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing>> > <http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> < > http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing > >> > > > > >> > > > > > > > > > > > > > On Apr 28, 2016, at 7:17 PM, Sushilkumar < > sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com> <mailto: > sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com>> > > > > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com> > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>>> > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com> > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>> > > > > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com> > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>>>>> > wrote: > > > > > > > > > > > > > > Dear Suoqing Ji: > > > > > > > > > > > > > > With a combination of center [0,0,0] and adjusting the width > w, I > > > > was able to eliminate all the warnings mentioned earlier. But the > off axis > > > > slice plots still wont give me a desired result. > > > > > > > > > > > > > > Plot available on the drive below below. > > > > > > > > > > > > > > The two plots L(010),N(0,0,1).png and L(101),N(001).png are > plotted > > > > for x-z plane and viewing angle of 45 degrees but both are > drastically > > > > different from each other. In fact the off axis slice plots > > > > (L(101),N(001).png) is not in the x-z plane either. > > > > > > > > > > > > > > I am aiming for a plot similar to vector_rotate.png which is > same as > > > > vector_original.png but rotated/viewed at an angle. > > > > > > > > > > > > > > The vector_rotate.png was created using the python image > library. I > > > > was hoping if yt has any similar options with off axis which would > tilt the > > > > vector plots and fill all the vector grids (which cannot be done > using PIL). > > > > > > > > > > > > > > The script (yt_velocity_fields.py) and sample data file > > > > (Expl_Bt101.mtx.tar.gz) is available on drive link for your > reference. > > > > > > > > > > > > > > Thanks in advance and my sincere apologies for repeated > queries. But > > > > this is extremely critical in reproducing my result and putting it > for > > > > publication. > > > > > > > > > > > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc > <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> < > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>> < > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> < > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>>> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -------------- next part -------------- > > > > > > An HTML attachment was scrubbed... > > > > > > URL: < > > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >> > > > > < > > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >>> > > > > < > > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >> > > > > < > > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >> > > > > >>> > > > > > > > > > > > > ------------------------------ > > > > > > > > > > > > Subject: Digest Footer > > > > > > > > > > > > _______________________________________________ > > > > > > yt-users mailing list > > > > > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >>> > > > > <mailto:yt-users@lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > > >> > > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>> > > > > > > > > > > > > > > > > > > ------------------------------ > > > > > > > > > > > > End of yt-users Digest, Vol 98, Issue 43 > > > > > > **************************************** > > > > > > > > > > > > > > > > > > > > > > > > -- > > > > > > SK2 > > > > > > > > > > > > "Claiming that something can move faster than light is a good > > > > conversation-stopper in physics. People edge away from you in > cocktail > > > > parties; friends never return phone calls. You just don?t mess with > Albert > > > > Einstein." > > > > > > > > > > > > _______________________________________________ > > > > > > yt-users mailing list > > > > > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >>> > > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> > > > > > > > > > > -------------- next part -------------- > > > > > An HTML attachment was scrubbed... > > > > > URL: < > > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >> > > > > < > > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >> > > > > >> > > > > > > > > > > ------------------------------ > > > > > > > > > > Message: 2 > > > > > Date: Tue, 3 May 2016 01:18:38 +0200 > > > > > From: Andrea Negri <negri.andre(a)gmail.com <mailto: > negri.andre(a)gmail.com> <mailto:negri.andre@gmail.com <mailto: > negri.andre(a)gmail.com>> <mailto:negri.andre@gmail.com <mailto: > negri.andre(a)gmail.com> <mailto:negri.andre@gmail.com <mailto: > negri.andre(a)gmail.com>> > > > > >> > > > > > To: Discussion of the yt analysis package > > > > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >>>> > > > > > Subject: Re: [yt-users] load structured mesh > > > > > Message-ID: > > > > > < > > > > CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com > <mailto:CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w@mail.gmail.com> > <mailto:CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w@mail.gmail.com > <mailto:CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w@mail.gmail.com > >> > > > > <mailto: > CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com > <mailto:CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w@mail.gmail.com> > <mailto:CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w@mail.gmail.com > <mailto:CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w@mail.gmail.com > >> > > > > >> > > > > > Content-Type: text/plain; charset=UTF-8 > > > > > > > > > > Dear John, > > > > > > > > > > thanks for the suggestions. Do you know if the grid data format is > > > > > compatible with a non uniform mesh? I was thinking of porting my > > > > > outputs in this format. > > > > > > > > > > > > > > > Cheers, > > > > > Andrea > > > > > > > > > > On 2 May 2016 at 18:52, John Zuhone <jzuhone(a)gmail.com <mailto: > jzuhone(a)gmail.com> <mailto:jzuhone@gmail.com <mailto:jzuhone@gmail.com>> > <mailto: > > > > jzuhone(a)gmail.com <mailto:jzuhone@gmail.com> <mailto: > jzuhone(a)gmail.com <mailto:jzuhone@gmail.com>>>> wrote: > > > > > > Hi Andrea, > > > > > > > > > > > > yt has some support for axisymmetric grids in 2D, so you won?t > need to > > > > convert to a 3D array. > > > > > > > > > > > > The bigger issue is the logarithmic grid spacing. This is > currently > > > > being worked on, but is in a very early state. Currently what it > does is > > > > use ?logr? as the coordinate instead of r, which may not be very > ideal for > > > > every situation. A lot of yt functionality is probably not > compatible with > > > > this way of doing things. > > > > > > > > > > > > Nevertheless, if you would like to explore it further, let us > know. > > > > > > > > > > > > Best, > > > > > > > > > > > > John Z > > > > > > > > > > > >> On May 2, 2016, at 10:53 AM, Andrea Negri < > negri.andre(a)gmail.com <mailto:negri.andre@gmail.com> <mailto: > negri.andre(a)gmail.com <mailto:negri.andre@gmail.com>> > > > > <mailto:negri.andre@gmail.com <mailto:negri.andre@gmail.com> > <mailto:negri.andre@gmail.com <mailto:negri.andre@gmail.com>>>> wrote: > > > > > >> > > > > > >> Of course. I have a 2.5D simulation in spherical coordinates. > It is > > > > > >> axial symmetric, so the actual grid is 2D, r and theta. The > grid is > > > > > >> structured, the grid spacing in theta is constant, while the > spacing > > > > > >> in r follows a geometrical progression, i.e. dr[i+1] = dr[i] * > factor, > > > > > >> where factor is a constant. > > > > > >> > > > > > >> I don't know if yt supports axisymmetric grids, but I can > bypass this > > > > > >> issue by duplicating the 2D array into a 3D one. Sure, it is not > > > > > >> efficient... > > > > > >> > > > > > >> My ultimate goal is to produce projections, off axis > projections and > > > > > >> mock X-ray observations. > > > > > >> > > > > > >> > > > > > >> Thanks, > > > > > >> Andrea > > > > > >> > > > > > >> On 2 May 2016 at 16:43, Nathan Goldbaum <nathan12343(a)gmail.com > <mailto:nathan12343@gmail.com> <mailto:nathan12343@gmail.com <mailto: > nathan12343(a)gmail.com>> > > > > <mailto:nathan12343@gmail.com <mailto:nathan12343@gmail.com> > <mailto:nathan12343@gmail.com <mailto:nathan12343@gmail.com>>>> wrote: > > > > > >>> Can you share a little bit more detail about your grid > structure? I > > > > know > > > > > >>> that support for log-radial bins is being worked on right now, > for > > > > example. > > > > > >>> > > > > > >>> On Mon, May 2, 2016 at 3:18 AM, Andrea Negri < > negri.andre(a)gmail.com <mailto:negri.andre@gmail.com> <mailto: > negri.andre(a)gmail.com <mailto:negri.andre@gmail.com>> > > > > <mailto:negri.andre@gmail.com <mailto:negri.andre@gmail.com> > <mailto:negri.andre@gmail.com <mailto:negri.andre@gmail.com>>>> wrote: > > > > > >>>> > > > > > >>>> Hi all, > > > > > >>>> > > > > > >>>> I'm trying to read ZEUS-MP 2 data, and I'm building my > programs step > > > > > >>>> by step. I was able to load data regularly spaced in spherical > > > > > >>>> coordinates. However, I actually have a non-uniform radial > grid. > > > > > >>>> > > > > > >>>> I tried with the script in attachment, but I have got odd > errors... > > > > > >>>> > > > > > >>>> Also, I have found this page, is it relevant for my case (just > > > > because > > > > > >>>> my code is mentioned, the answer would be yes :) )? > > > > > >>>> https://bitbucket.org/yt_analysis/grid_data_format < > https://bitbucket.org/yt_analysis/grid_data_format> < > https://bitbucket.org/yt_analysis/grid_data_format < > https://bitbucket.org/yt_analysis/grid_data_format>> < > > > > https://bitbucket.org/yt_analysis/grid_data_format < > https://bitbucket.org/yt_analysis/grid_data_format> < > https://bitbucket.org/yt_analysis/grid_data_format < > https://bitbucket.org/yt_analysis/grid_data_format>>> > > > > > >>>> > > > > > >>>> > > > > > >>>> Thanks, > > > > > >>>> Andrea > > > > > >>>> > > > > > >>>> _______________________________________________ > > > > > >>>> yt-users mailing list > > > > > >>>> yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >>> > > > > > >>>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> > > > > > >>>> > > > > > >>> > > > > > >>> > > > > > >>> _______________________________________________ > > > > > >>> yt-users mailing list > > > > > >>> yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >>> > > > > > >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> > > > > > >>> > > > > > >> _______________________________________________ > > > > > >> yt-users mailing list > > > > > >> yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >>> > > > > > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> > > > > > > > > > > > > _______________________________________________ > > > > > > yt-users mailing list > > > > > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> <mailto: > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >>> > > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> > > > > > > > > > > > > > > > ------------------------------ > > > > > > > > > > Subject: Digest Footer > > > > > > > > > > _______________________________________________ > > > > > yt-users mailing list > > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org>> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >>> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> > > > > > > > > > > > > > > > ------------------------------ > > > > > > > > > > End of yt-users Digest, Vol 99, Issue 3 > > > > > *************************************** > > > > > > > > > > > > > > > > > > > > -- > > > > > SK2 > > > > > > > > > > "Claiming that something can move faster than light is a good > > > > conversation-stopper in physics. People edge away from you in > cocktail > > > > parties; friends never return phone calls. You just don?t mess with > Albert > > > > Einstein." > > > > > > > > > > _______________________________________________ > > > > > yt-users mailing list > > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > > > > > -------------- next part -------------- > > > > An HTML attachment was scrubbed... > > > > URL: < > > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >> > > > > > > > > > > > > > ------------------------------ > > > > > > > > Subject: Digest Footer > > > > > > > > _______________________________________________ > > > > yt-users mailing list > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > > > > > > > > > ------------------------------ > > > > > > > > End of yt-users Digest, Vol 99, Issue 15 > > > > **************************************** > > > > > > > > > > > > > > > > -- > > > *SK2* > > > > > > *"**Claiming that something can move faster than light is a good > > > conversation-stopper in physics. People edge away from you in cocktail > > > parties; friends never return phone calls. You just don?t mess with > Albert > > > Einstein.**"* > > > -------------- next part -------------- > > > An HTML attachment was scrubbed... > > > URL: < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201…> > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >>> > > > > > > ------------------------------ > > > > > > Subject: Digest Footer > > > > > > _______________________________________________ > > > yt-users mailing list > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > > > > > > ------------------------------ > > > > > > End of yt-users Digest, Vol 99, Issue 16 > > > **************************************** > > > > > > > > > > > > -- > > > SK2 > > > > > > "Claiming that something can move faster than light is a good > conversation-stopper in physics. People edge away from you in cocktail > parties; friends never return phone calls. You just don?t mess with Albert > Einstein." > > > > > > _______________________________________________ > > > yt-users mailing list > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> > > > > -------------- next part -------------- > > An HTML attachment was scrubbed... > > URL: < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >> > > > > ------------------------------ > > > > Subject: Digest Footer > > > > _______________________________________________ > > yt-users mailing list > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> > > > > > > ------------------------------ > > > > End of yt-users Digest, Vol 99, Issue 18 > > **************************************** > > > > > > > > -- > > SK2 > > > > "Claiming that something can move faster than light is a good > conversation-stopper in physics. People edge away from you in cocktail > parties; friends never return phone calls. You just don?t mess with Albert > Einstein." > > > > _______________________________________________ > > yt-users mailing list > > yt-users(a)lists.spacepope.org > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > > > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > yt-users mailing list > yt-users(a)lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > > > ------------------------------ > > End of yt-users Digest, Vol 99, Issue 23 > **************************************** > -- *SK2* *"**Claiming that something can move faster than light is a good conversation-stopper in physics. People edge away from you in cocktail parties; friends never return phone calls. You just don’t mess with Albert Einstein.**"*

1 0

Camera/Off Axis Options
by Sushilkumar 10 May '16

10 May '16

Dear Suoqing Ji: I was able to include the off axis using frb options (script yt_frb_offaxis.py on drive link) But it gives me a plot with its edges chopped. For example L(1,0,0) N(0,1,1).png and L(1,0,1) N(0,1,1).png have empty cells on the edges. I should not have empty cells as all of the cells are filled like L(1,0,0) N(0,0,1).png. Since only the viewing angle is changed it should still fill all the cells. I tried it for different angles as well but there are always some empty cells present for every off axis slices. Can you suggest wherein these edges are not empty and have quiver vectors? Thanks in advance. https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc On Thu, May 5, 2016 at 8:22 PM, <yt-users-request(a)lists.spacepope.org> wrote: > Send yt-users mailing list submissions to > yt-users(a)lists.spacepope.org > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > or, via email, send a message with subject or body 'help' to > yt-users-request(a)lists.spacepope.org > > You can reach the person managing the list at > yt-users-owner(a)lists.spacepope.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of yt-users digest..." > > > Today's Topics: > > 1. Re: Camera/Off Axis Options (Suoqing Ji) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Thu, 5 May 2016 18:19:51 -0700 > From: Suoqing Ji <suoqing(a)physics.ucsb.edu> > To: Discussion of the yt analysis package > <yt-users(a)lists.spacepope.org> > Subject: Re: [yt-users] Camera/Off Axis Options > Message-ID: <CF41248A-0BEA-4CF7-A2FE-DA7ECA15B0AE(a)physics.ucsb.edu> > Content-Type: text/plain; charset="utf-8" > > Great! You could switch to linear or symlog normalization for non-positive > values. > > Best wishes, > -- > Suoqing JI > Ph.D Candidate > Department of Physics > University of California, Santa Barbara > http://web.physics.ucsb.edu/~suoqing > > > On May 5, 2016, at 6:02 PM, Sushilkumar <sushil.sush19us(a)gmail.com> > wrote: > > > > Dear Suoqing Ji: > > > > Think I was able to overcome the previous error and currently running > without any errors (however a few warnings do show up). > > > > I would have to test a few cases before I can confirm on the same. > > > > Thanks in advance. > > > > > > > > > > > > On Thu, May 5, 2016 at 7:44 PM, <yt-users-request(a)lists.spacepope.org > <mailto:yt-users-request@lists.spacepope.org>> wrote: > > Send yt-users mailing list submissions to > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> > > > > To subscribe or unsubscribe via the World Wide Web, visit > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> > > or, via email, send a message with subject or body 'help' to > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> > > > > You can reach the person managing the list at > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> > > > > When replying, please edit your Subject line so it is more specific > > than "Re: Contents of yt-users digest..." > > > > > > Today's Topics: > > > > 1. Camera/Off Axis Options (Sushilkumar) > > > > > > ---------------------------------------------------------------------- > > > > Message: 1 > > Date: Thu, 5 May 2016 19:44:22 -0500 > > From: Sushilkumar <sushil.sush19us(a)gmail.com <mailto: > sushil.sush19us(a)gmail.com>> > > To: Discussion of the yt analysis package > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org>> > > Subject: [yt-users] Camera/Off Axis Options > > Message-ID: > > <CAKARaKUGCFF1L2x+AcsinaA1M2dEksTO= > 0_WuVjJaporyGc6sg(a)mail.gmail.com <mailto:0_WuVjJaporyGc6sg@mail.gmail.com > >> > > Content-Type: text/plain; charset="utf-8" > > > > Dear Suoqing Ji: > > > > For the frb off axis I get the below error. The script > (yt_frb_offaxis.py) > > for your reference is available on the drive link. > > > > Thanks in advance > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> > > > > > > > > Error: > > > > Traceback (most recent call last): > > File "yt_frb_offaxis.py", line 63, in <module> > > plt.colorbar() > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/pyplot.py", > > line 2237, in colorbar > > ret = gcf().colorbar(mappable, cax = cax, ax=ax, **kw) > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/figure.py", > > line 1569, in colorbar > > cb = cbar.colorbar_factory(cax, mappable, **kw) > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > line 1330, in colorbar_factory > > cb = Colorbar(cax, mappable, **kwargs) > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > line 905, in __init__ > > ColorbarBase.__init__(self, ax, **kw) > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > line 323, in __init__ > > self.draw_all() > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > line 348, in draw_all > > self._config_axes(X, Y) > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > line 444, in _config_axes > > self.update_ticks() > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > line 373, in update_ticks > > ticks, ticklabels, offset_string = self._ticker() > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py", > > line 594, in _ticker > > b = np.array(locator()) > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/ticker.py", > > line 1535, in __call__ > > return self.tick_values(vmin, vmax) > > File > > > "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/ticker.py", > > line 1553, in tick_values > > "Data has no positive values, and therefore can not be " > > ValueError: Data has no positive values, and therefore can not be > > log-scaled. > > > > > > On Thu, May 5, 2016 at 3:09 PM, <yt-users-request(a)lists.spacepope.org > <mailto:yt-users-request@lists.spacepope.org>> > > wrote: > > > > > Send yt-users mailing list submissions to > > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> > > > > > > To subscribe or unsubscribe via the World Wide Web, visit > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> > > > or, via email, send a message with subject or body 'help' to > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> > > > > > > You can reach the person managing the list at > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> > > > > > > When replying, please edit your Subject line so it is more specific > > > than "Re: Contents of yt-users digest..." > > > > > > > > > Today's Topics: > > > > > > 1. Re: Camera/Off Axis Options (Suoqing Ji) > > > > > > > > > ---------------------------------------------------------------------- > > > > > > Message: 1 > > > Date: Thu, 5 May 2016 13:09:35 -0700 > > > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: > suoqing(a)physics.ucsb.edu>> > > > To: Discussion of the yt analysis package > > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org>> > > > Subject: Re: [yt-users] Camera/Off Axis Options > > > Message-ID: <CFD3270F-3DD0-42FB-A13C-7AF897B410DA(a)physics.ucsb.edu > <mailto:CFD3270F-3DD0-42FB-A13C-7AF897B410DA@physics.ucsb.edu>> > > > Content-Type: text/plain; charset="utf-8" > > > > > > Hi Sushil, > > > > > > It?s a derived field and will be automatically computed by yt based on > > > three components of velocity field. You could replace it to any other > > > fields you want. > > > > > > Best wishes, > > > -- > > > Suoqing JI > > > Ph.D Candidate > > > Department of Physics > > > University of California, Santa Barbara > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> > > > > > > > On May 5, 2016, at 1:07 PM, Sushilkumar <sushil.sush19us(a)gmail.com > <mailto:sushil.sush19us@gmail.com>> > > > wrote: > > > > > > > > Dear Suoqing Ji: > > > > > > > > In your draft script what field does 'velocity_magnitude' refer to? > I do > > > not have a field that correspond to magnitude. > > > > > > > > On Mon, May 2, 2016 at 6:19 PM, < > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> > > > <mailto:yt-users-request@lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>> wrote: > > > > Send yt-users mailing list submissions to > > > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto: > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org>> > > > > > > > > To subscribe or unsubscribe via the World Wide Web, visit > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > or, via email, send a message with subject or body 'help' to > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> > > > > > > > > You can reach the person managing the list at > > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>> > > > > > > > > When replying, please edit your Subject line so it is more specific > > > > than "Re: Contents of yt-users digest..." > > > > > > > > > > > > Today's Topics: > > > > > > > > 1. Re: Camera/Off Axis Options (Suoqing Ji) > > > > 2. Re: load structured mesh (Andrea Negri) > > > > > > > > > > > > > ---------------------------------------------------------------------- > > > > > > > > Message: 1 > > > > Date: Mon, 2 May 2016 13:42:32 -0700 > > > > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: > suoqing(a)physics.ucsb.edu> <mailto: > > > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>>> > > > > To: Discussion of the yt analysis package > > > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto: > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org>>> > > > > Subject: Re: [yt-users] Camera/Off Axis Options > > > > Message-ID: <820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu > <mailto:820FD28B-2CB2-4131-AD64-0A07990F5055@physics.ucsb.edu> > > > <mailto:820FD28B-2CB2-4131-AD64-0A07990F5055@physics.ucsb.edu <mailto: > 820FD28B-2CB2-4131-AD64-0A07990F5055(a)physics.ucsb.edu>>> > > > > Content-Type: text/plain; charset="utf-8" > > > > > > > > Hi Sushil, > > > > > > > > What you can do currently is to get the data from fixed resolution > > > buffer and make the plot with quiver callback in matplotlib. The > following > > > is a basic draft for this: > > > > > > > > L = [1, -1, 0] > > > > north_vector = [0, 0, 1] > > > > slc = yt.OffAxisSlicePlot(ds, L, 'cutting_plane_velocity_x', > > > center=[0,0,0], width=(180,'km'), north_vector=north_vector) > > > > > > > > # Now get the fixed resolution buffer > > > > vel = slc._frb['velocity_magnitude?] > > > > U = slc._frb['cutting_plane_velocity_x'] > > > > V = slc._frb['cutting_plane_velocity_y'] > > > > > > > > extentx = [slc.xlim[i].in_units('km') for i in (0, 1)] > > > > extenty = [slc.ylim[i].in_units('km') for i in (0, 1)] > > > > extent = extentx + extenty > > > > > > > > x = np.linspace(extentx[0], extentx[1], vel.shape[0]) > > > > y = np.linspace(extenty[1], extenty[0], vel.shape[1]) > > > > > > > > X, Y = np.meshgrid(x, y) > > > > > > > > normalize = True > > > > if normalize is True: > > > > N = np.sqrt(U**2+V**2) > > > > U /= N > > > > V /= N > > > > > > > > norm = matplotlib.colors.LogNorm(vmin=vel.min(), vmax=vel.max()) > > > > factor = 40 > > > > > > > > plt.quiver(X[::factor, ::factor], Y[::factor, ::factor], U[::factor, > > > ::factor], V[::factor, ::factor]) > > > > plt.imshow(vel.d, extent=extent, norm=norm) > > > > plt.colorbar() > > > > plt.savefig('quiver_plot.png') > > > > > > > > Best wishes, > > > > -- > > > > Suoqing JI > > > > Ph.D Candidate > > > > Department of Physics > > > > University of California, Santa Barbara > > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> < > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing>> > > > > > > > > > On Apr 30, 2016, at 4:04 PM, Sushilkumar < > sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com> > > > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>>> > wrote: > > > > > > > > > > Dear Suoqing Ji: > > > > > > > > > > Thanks. In the meanwhile can you suggest any alternate > function/method > > > in yt that I can use for my vector plots? > > > > > > > > > > I also have a 3d (streamlines_t000.png) and 2d streamline plot > > > (UniformGridData_Slice_y_field_x_t000.png), which needs to treated in > the > > > same way. Can you suggest any approach for these plots? > > > > > > > > > > Drive link: > > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> > > > > > > > > > > > > > > > Thanks in advance > > > > > > > > > > > > > > > > > > > > On Sat, Apr 30, 2016 at 12:56 PM, < > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> <mailto: > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>>> wrote: > > > > > Send yt-users mailing list submissions to > > > > > yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto: > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org>> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > > > <mailto:yt-users@lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org>>> > > > > > > > > > > To subscribe or unsubscribe via the World Wide Web, visit > > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> > > > <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> > > > > > or, via email, send a message with subject or body 'help' to > > > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>> <mailto: > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org> <mailto: > > > yt-users-request(a)lists.spacepope.org <mailto: > yt-users-request(a)lists.spacepope.org>>> > > > > > > > > > > You can reach the person managing the list at > > > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>> <mailto: > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org> <mailto: > > > yt-users-owner(a)lists.spacepope.org <mailto: > yt-users-owner(a)lists.spacepope.org>>> > > > > > > > > > > When replying, please edit your Subject line so it is more specific > > > > > than "Re: Contents of yt-users digest..." > > > > > > > > > > > > > > > Today's Topics: > > > > > > > > > > 1. Re: Camera/Off Axis Options (Suoqing Ji) > > > > > > > > > > > > > > > > ---------------------------------------------------------------------- > > > > > > > > > > Message: 1 > > > > > Date: Fri, 29 Apr 2016 12:35:04 -0700 > > > > > From: Suoqing Ji <suoqing(a)physics.ucsb.edu <mailto: > suoqing(a)physics.ucsb.edu> <mailto: > > > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>> <mailto: > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu> <mailto: > > > suoqing(a)physics.ucsb.edu <mailto:suoqing@physics.ucsb.edu>>>> > > > > > To: Discussion of the yt analysis package > > > > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto: > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org>> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > > > <mailto:yt-users@lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org>>>> > > > > > Subject: Re: [yt-users] Camera/Off Axis Options > > > > > Message-ID: <9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu > <mailto:9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78@physics.ucsb.edu> > > > <mailto:9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78@physics.ucsb.edu <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu>> <mailto: > > > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu> <mailto: > > > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu <mailto: > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78(a)physics.ucsb.edu>>>> > > > > > Content-Type: text/plain; charset="us-ascii" > > > > > > > > > > Hi Sushil, > > > > > > > > > > I was able to reproduce your error and created an issue here: > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > > > > > < > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >> > > > < > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > > > > > < > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >>> > > > < > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > > > > > < > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > >> > > > < > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > > > > > < > > > > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > < > https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-a… > > > > > >>> > > > > > > > > > > Best wishes, > > > > > -- > > > > > Suoqing JI > > > > > Ph.D Candidate > > > > > Department of Physics > > > > > University of California, Santa Barbara > > > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> < > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing>> < > > > http://web.physics.ucsb.edu/~suoqing < > http://web.physics.ucsb.edu/~suoqing> < > http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing > > > > > >> > > > > > > > > > > > On Apr 28, 2016, at 7:17 PM, Sushilkumar < > sushil.sush19us(a)gmail.com <mailto:sushil.sush19us@gmail.com> > > > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>> > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com> > > > <mailto:sushil.sush19us@gmail.com <mailto:sushil.sush19us@gmail.com>>>> > wrote: > > > > > > > > > > > > Dear Suoqing Ji: > > > > > > > > > > > > With a combination of center [0,0,0] and adjusting the width w, I > > > was able to eliminate all the warnings mentioned earlier. But the off > axis > > > slice plots still wont give me a desired result. > > > > > > > > > > > > Plot available on the drive below below. > > > > > > > > > > > > The two plots L(010),N(0,0,1).png and L(101),N(001).png are > plotted > > > for x-z plane and viewing angle of 45 degrees but both are drastically > > > different from each other. In fact the off axis slice plots > > > (L(101),N(001).png) is not in the x-z plane either. > > > > > > > > > > > > I am aiming for a plot similar to vector_rotate.png which is > same as > > > vector_original.png but rotated/viewed at an angle. > > > > > > > > > > > > The vector_rotate.png was created using the python image > library. I > > > was hoping if yt has any similar options with off axis which would > tilt the > > > vector plots and fill all the vector grids (which cannot be done using > PIL). > > > > > > > > > > > > The script (yt_velocity_fields.py) and sample data file > > > (Expl_Bt101.mtx.tar.gz) is available on drive link for your reference. > > > > > > > > > > > > Thanks in advance and my sincere apologies for repeated queries. > But > > > this is extremely critical in reproducing my result and putting it for > > > publication. > > > > > > > > > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> < > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> < > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> < > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc < > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>> > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -------------- next part -------------- > > > > > An HTML attachment was scrubbed... > > > > > URL: < > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > > > > > < > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >> > > > < > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > > > > > < > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > > > > > >>> > > > > > > > > > > ------------------------------ > > > > > > > > > > Subject: Digest Footer > > > > > > > > > > _______________________________________________ > > > > > yt-users mailing list > > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > <mailto:yt-users@lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org> > > > >> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> > > > > > > > > > > > > > > > ------------------------------ > > > > > > > > > > End of yt-users Digest, Vol 98, Issue 43 > > > > > **************************************** > > > > > > > > > > > > > > > > > > > > -- > > > > > SK2 > > > > > > > > > > "Claiming that something can move faster than light is a good > > > conversation-stopper in physics. People edge away from you in cocktail > > > parties; friends never return phone calls. You just don?t mess with > Albert > > > Einstein." > > > > > > > > > > _______________________________________________ > > > > > yt-users mailing list > > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > > > > > -------------- next part -------------- > > > > An HTML attachment was scrubbed... > > > > URL: < > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > > > > > < > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > > > > > >> > > > > > > > > ------------------------------ > > > > > > > > Message: 2 > > > > Date: Tue, 3 May 2016 01:18:38 +0200 > > > > From: Andrea Negri <negri.andre(a)gmail.com <mailto: > negri.andre(a)gmail.com> <mailto:negri.andre@gmail.com <mailto: > negri.andre(a)gmail.com> > > > >> > > > > To: Discussion of the yt analysis package > > > > <yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto: > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org>>> > > > > Subject: Re: [yt-users] load structured mesh > > > > Message-ID: > > > > < > > > CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com > <mailto:CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w@mail.gmail.com > > > > > <mailto: > CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w(a)mail.gmail.com > <mailto:CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w@mail.gmail.com > > > > > >> > > > > Content-Type: text/plain; charset=UTF-8 > > > > > > > > Dear John, > > > > > > > > thanks for the suggestions. Do you know if the grid data format is > > > > compatible with a non uniform mesh? I was thinking of porting my > > > > outputs in this format. > > > > > > > > > > > > Cheers, > > > > Andrea > > > > > > > > On 2 May 2016 at 18:52, John Zuhone <jzuhone(a)gmail.com <mailto: > jzuhone(a)gmail.com> <mailto: > > > jzuhone(a)gmail.com <mailto:jzuhone@gmail.com>>> wrote: > > > > > Hi Andrea, > > > > > > > > > > yt has some support for axisymmetric grids in 2D, so you won?t > need to > > > convert to a 3D array. > > > > > > > > > > The bigger issue is the logarithmic grid spacing. This is currently > > > being worked on, but is in a very early state. Currently what it does > is > > > use ?logr? as the coordinate instead of r, which may not be very ideal > for > > > every situation. A lot of yt functionality is probably not compatible > with > > > this way of doing things. > > > > > > > > > > Nevertheless, if you would like to explore it further, let us know. > > > > > > > > > > Best, > > > > > > > > > > John Z > > > > > > > > > >> On May 2, 2016, at 10:53 AM, Andrea Negri <negri.andre(a)gmail.com > <mailto:negri.andre@gmail.com> > > > <mailto:negri.andre@gmail.com <mailto:negri.andre@gmail.com>>> wrote: > > > > >> > > > > >> Of course. I have a 2.5D simulation in spherical coordinates. It > is > > > > >> axial symmetric, so the actual grid is 2D, r and theta. The grid > is > > > > >> structured, the grid spacing in theta is constant, while the > spacing > > > > >> in r follows a geometrical progression, i.e. dr[i+1] = dr[i] * > factor, > > > > >> where factor is a constant. > > > > >> > > > > >> I don't know if yt supports axisymmetric grids, but I can bypass > this > > > > >> issue by duplicating the 2D array into a 3D one. Sure, it is not > > > > >> efficient... > > > > >> > > > > >> My ultimate goal is to produce projections, off axis projections > and > > > > >> mock X-ray observations. > > > > >> > > > > >> > > > > >> Thanks, > > > > >> Andrea > > > > >> > > > > >> On 2 May 2016 at 16:43, Nathan Goldbaum <nathan12343(a)gmail.com > <mailto:nathan12343@gmail.com> > > > <mailto:nathan12343@gmail.com <mailto:nathan12343@gmail.com>>> wrote: > > > > >>> Can you share a little bit more detail about your grid > structure? I > > > know > > > > >>> that support for log-radial bins is being worked on right now, > for > > > example. > > > > >>> > > > > >>> On Mon, May 2, 2016 at 3:18 AM, Andrea Negri < > negri.andre(a)gmail.com <mailto:negri.andre@gmail.com> > > > <mailto:negri.andre@gmail.com <mailto:negri.andre@gmail.com>>> wrote: > > > > >>>> > > > > >>>> Hi all, > > > > >>>> > > > > >>>> I'm trying to read ZEUS-MP 2 data, and I'm building my programs > step > > > > >>>> by step. I was able to load data regularly spaced in spherical > > > > >>>> coordinates. However, I actually have a non-uniform radial grid. > > > > >>>> > > > > >>>> I tried with the script in attachment, but I have got odd > errors... > > > > >>>> > > > > >>>> Also, I have found this page, is it relevant for my case (just > > > because > > > > >>>> my code is mentioned, the answer would be yes :) )? > > > > >>>> https://bitbucket.org/yt_analysis/grid_data_format < > https://bitbucket.org/yt_analysis/grid_data_format> < > > > https://bitbucket.org/yt_analysis/grid_data_format < > https://bitbucket.org/yt_analysis/grid_data_format>> > > > > >>>> > > > > >>>> > > > > >>>> Thanks, > > > > >>>> Andrea > > > > >>>> > > > > >>>> _______________________________________________ > > > > >>>> yt-users mailing list > > > > >>>> yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> > > > > >>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > >>>> > > > > >>> > > > > >>> > > > > >>> _______________________________________________ > > > > >>> yt-users mailing list > > > > >>> yt-users(a)lists.spacepope.org <mailto: > yt-users(a)lists.spacepope.org> <mailto:yt-users@lists.spacepope.org > <mailto:yt-users@lists.spacepope.org>> > > > > >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > >>> > > > > >> _______________________________________________ > > > > >> yt-users mailing list > > > > >> yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > > > > > > > _______________________________________________ > > > > > yt-users mailing list > > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > > > > > > > > > ------------------------------ > > > > > > > > Subject: Digest Footer > > > > > > > > _______________________________________________ > > > > yt-users mailing list > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org > >> > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> < > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> > > > > > > > > > > > > ------------------------------ > > > > > > > > End of yt-users Digest, Vol 99, Issue 3 > > > > *************************************** > > > > > > > > > > > > > > > > -- > > > > SK2 > > > > > > > > "Claiming that something can move faster than light is a good > > > conversation-stopper in physics. People edge away from you in cocktail > > > parties; friends never return phone calls. You just don?t mess with > Albert > > > Einstein." > > > > > > > > _______________________________________________ > > > > yt-users mailing list > > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> > > > > > > -------------- next part -------------- > > > An HTML attachment was scrubbed... > > > URL: < > > > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > > > > > > > > > > > > ------------------------------ > > > > > > Subject: Digest Footer > > > > > > _______________________________________________ > > > yt-users mailing list > > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> > > > > > > > > > ------------------------------ > > > > > > End of yt-users Digest, Vol 99, Issue 15 > > > **************************************** > > > > > > > > > > > -- > > *SK2* > > > > *"**Claiming that something can move faster than light is a good > > conversation-stopper in physics. People edge away from you in cocktail > > parties; friends never return phone calls. You just don?t mess with > Albert > > Einstein.**"* > > -------------- next part -------------- > > An HTML attachment was scrubbed... > > URL: < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > >> > > > > ------------------------------ > > > > Subject: Digest Footer > > > > _______________________________________________ > > yt-users mailing list > > yt-users(a)lists.spacepope.org <mailto:yt-users@lists.spacepope.org> > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org < > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> > > > > > > ------------------------------ > > > > End of yt-users Digest, Vol 99, Issue 16 > > **************************************** > > > > > > > > -- > > SK2 > > > > "Claiming that something can move faster than light is a good > conversation-stopper in physics. People edge away from you in cocktail > parties; friends never return phone calls. You just don?t mess with Albert > Einstein." > > > > _______________________________________________ > > yt-users mailing list > > yt-users(a)lists.spacepope.org > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: < > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/201… > > > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > yt-users mailing list > yt-users(a)lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org > > > ------------------------------ > > End of yt-users Digest, Vol 99, Issue 18 > **************************************** > -- *SK2* *"**Claiming that something can move faster than light is a good conversation-stopper in physics. People edge away from you in cocktail parties; friends never return phone calls. You just don’t mess with Albert Einstein.**"*

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ZEUS support by means of the GDF format, almost completed but...
by Andrea Negri 09 May '16

09 May '16

Hi all, the interface between zeus and yt is almost completed. This is a first version, and it not efficient, since it requires interpolation on different grids. However, it is a starting point. I still have a major issue: my handmade code to interpolate ZEUS data on a series of grids seems to work well. However, in yt I'm not able to plot the entire r grid, but just the first patch (the most internal one). I don't know how the GDF handle the AMR grid, I just explored the data I have found on this page http://yt-project.org/data/ Can anyone help me? In attachment you will find all my scripts, plus data and a README. You should be able to see the problem from the picture produced by the script. Many thanks, Andrea

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[ANN] Introducing the yt Hub
by Kacper Kowalik 07 May '16

07 May '16

Hi Everyone! The yt community is proud to announce the release of yt Hub 1.0. The yt Hub (https://hub.yt) is an environment where data can be published, analyzed and shared with other people. The yt Hub relies on multiple open source microservices that are loosely coupled together. At its core we utilize: * Girder - as a data management platform (https://girder.hub.yt) * Jupyter Notebook - for interactive data exploration * Curldrop - for a quick and easy data sharing * MediaGoblin - for a quick and easy image sharing We encourage you to view this short video: https://www.youtube.com/watch?v=Uq_3uT7JHGA to see how we integrated Girder with Jupyter Notebook or read https://docs.hub.yt/girder.html Each authenticated user (Google, Bitbucket, or GitHub) is provided with 10GB of free space that can be used for uploading data sets and sharing them with other people. We plan to gradually increase the storage capacity of the Hub. Additionally, we're developing a process for sharing of large, community-provided data sets. If your data requirements exceed the current limit, please don't hesitate to contact us directly so that we can develop a plan to integrate your data in an efficient way. Over time we plan to expand the capabilities of the existing services and add new ones. A short set of documentation describing the current services and what you can do with them can be found at https://docs.hub.yt/ As always, if you have any questions, concerns, or run into any trouble please don't hesitate to send a message to the mailing list or stop by our IRC channel. We thank the National Science Foundation (ACI-1535651) and the Gordon and Betty Moore Foundation (GBMF4561) for their support in developing and deploying this service. Thank you, Kacper Kowalik on behalf of the yt development team

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