Mailman 3 December 2015 - SfePy

Material Parameters of Individual Nodes
by derj...＠web.de 12 Apr '22

12 Apr '22

Hello! It's a great tool you built there! I'd like to use it for some kind of topology optimisation. Is there an "idiomatic" way to set the material parameters of individual nodes? Thank you very much! JonnyB

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Re: Torque
by Robert Cimrman 10 Mar '18

10 Mar '18

In examples/large_deformation/hyperelastic.py a rotation by displacements is applied. By using a similar function the vectors defining the force couples could be defined for dw_surface_ltr (IMHO). Does it make sense? r. ----- Reply message ----- From: "Andre Smit" <freev...(a)gmail.com> To: <sfepy...(a)googlegroups.com> Subject: Torque Date: Sat, Dec 18, 2010 05:10 What is the best way to apply a torque load to a model? -- Andre -- You received this message because you are subscribed to the Google Groups "sfepy-devel" group. To post to this group, send email to sfepy...(a)googlegroups.com. To unsubscribe from this group, send email to sfepy-devel...(a)googlegroups.com. For more options, visit this group at http://groups.google.com/group/sfepy-devel?hl=en.

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new interactive example with time stepping
by Robert Cimrman 13 Mar '17

13 Mar '17

Hi, I have just updated the time stepping solvers in sfepy for interactive use, as demonstrated in the new example [1]. For basic use, ignore the probing code - the time stepper can be used as simply as: tss = SimpleTimeSteppingSolver({'t0' : 0.0, 't1' : 100.0, 'n_step' : 11}, problem=problem) tss.init_time() for step, time, state in tss(): pass r. [1] http://sfepy.org/doc-devel/examples/diffusion/time_poisson_interactive.html

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postprocessing
by Nina Halabi 05 May '16

05 May '16

Dear Robert I could overcome my previous problems of not having root privileges, so it all worked up till the command: ./postproc.py cylinder.vtk This echoed the below message: Exception In /home/gmh/.local/lib/python2.7/site-packages/mayavi-4.4.4.dev0-py2.7-linux-x86_64.egg/mayavi/sources/vtk_xml_file_reader.py:86 AttributeError: 'AlgorithmOutput' object has no attribute 'point_data' (in get_all_attributes) Traceback (most recent call last): File "/home/gmh/.local/lib/python2.7/site-packages/traits-4.6.0.dev354-py2.7-linux-x86_64.egg/traits/trait_notifiers.py", line 340, in __call__ self.handler( *args ) File "/home/gmh/sfepy/sfepy/postprocess/dataset_manager.py", line 177, in _dataset_changed self._assign_attribute.input = value File "/home/gmh/.local/lib/python2.7/site-packages/traits-4.6.0.dev354-py2.7-linux-x86_64.egg/traits/trait_handlers.py", line 104, in _read_only name, class_of( object ) ) TraitError: The 'input' trait of an AssignAttribute instance is 'read only'. sfepy: point scalars t at [-0.05 -0.02 0. ] sfepy: range: -2.00e+00 2.00e+00 l2 norm range: 1.06e-02 2.00e+00 No handlers could be found for logger "mayavi.core.common" I'm using Python 2.7.8 if that's relevant to the current issue. Thanks again Cheers

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1D line elements in SfePy
by Nimish 22 Jan '16

22 Jan '16

I am currrently looking for FEM packages to help me solve a system of beams and columns, basically a collection of 1D bernoulli/timoshenko line elements. I started reading SfePy docs and i am getting the idea that doing the above is not really possible here, am i right? Are only 2D area elements permitted in SfePy? Or is there any direct support for solving 1D line elements too.. Cheers Nimish

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Non linear Poisson Equation
by Francesca Camorrino 18 Dec '15

18 Dec '15

Hello! I'm trying to solve Poisson equation with Sfepy in a very simple domain, but I found some problem: 1) I need triangular mesh on a rectangular/square domain 2) I have null von neumann conditions ( and I omitted them in boundary condition) like in the discussion https://groups.google.com/forum/#!searchin/sfepy-devel/null$20von$20neumann… 3)I know that this problem have many convergence problem, in one of this case is the simulation successful? Or I find some error? I don't know because the simulation is successful but in the postprocessing the result isn't correct I attach the problem description file too. If you want I would like some advice about my problem Thank you very much -Francesca

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cannot set toolkit to wx because it has already been set to qt4
by silesa...＠hotmail.com 16 Dec '15

16 Dec '15

I have made an inline instalation of sfepy-2013.3 on fedora22 , I run the tests and I have only 3 failed, they maybe related to the parallel option since I don't have instaled that option. I have python 2.7.10, mayavi 4.4.3, VTK 6.1.0, Qt 4.8.6 Either on the python or ipython window when I try to import: *from sfepy.postprocess.viewer import Viewe*r I get the following message, *cannot set toolkit to wx because it has already been set to qt4* and of course any postprocessing will fail

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failed test
by Nina Halabi 15 Dec '15

15 Dec '15

Hello Kindly , I'm trying to install SfePy on a redhat linux workstation. I was running the python tests and test_linear_solvers.py failed. the command: python run_tests.py --debug tests/test_linear_solvers.py gave the below. Please note that I got the message "mpi4py (optional) is available in version 1.3, but >= 1.3.1 is needed; you may get run-time errors" during compilation. Cheers, gmh@calx039$ python run_tests.py --debug tests/test_linear_solvers.py <<< directory: tests, test files: 1 <<< tests/test_linear_solvers.py sfepy: left over: ['verbose', '__builtins__', '__doc__', '__name__', 'TestCommon', 'data_dir', '_filename', '__package__', 'output_name', '__file__'] sfepy: reading mesh [line2, tri3, quad4, tetra4, hexa8] (/home/gmh/Desktop/sfepy/meshes/3d/special/cube_cylinder.mesh)... sfepy: ...done in 0.14 s sfepy: creating regions... sfepy: Gamma_Right sfepy: Omega sfepy: Gamma_Left sfepy: ...done in 0.18 s sfepy: equation "Temperature": sfepy: dw_laplace.i.Omega(coef.val, s, t) = 0 sfepy: using solvers: ts: no ts nls: newton ls: d01 sfepy: updating variables... sfepy: ...done sfepy: setting up dof connectivities... sfepy: ...done in 0.00 s sfepy: matrix shape: (9511, 9511) sfepy: assembling matrix graph... sfepy: ...done in 0.04 s sfepy: matrix structural nonzeros: 132239 (1.46e-03% fill) >>> test instance prepared (1 test(s)) ... d00 ls.scipy_direct umfpack ... matrix size: (9511, 9511) ... nnz: 132239 sfepy: updating materials... sfepy: coef sfepy: ...done in 0.01 s sfepy: nls: iter: 0, residual: 3.587850e+00 (rel: 1.000000e+00) sfepy: rezidual: 0.01 [s] sfepy: solve: 1.49 [s] sfepy: matrix: 0.02 [s] sfepy: nls: iter: 1, residual: 4.898229e-15 (rel: 1.365227e-15) ... rezidual: 0.01 [s] ... solve: 1.49 [s] ... matrix: 0.02 [s] ... condition: 0, err0: 3.588e+00, err: 4.898e-15 ... d01 ls.scipy_direct superlu ... matrix size: (9511, 9511) ... nnz: 132239 sfepy: updating materials... sfepy: coef sfepy: ...done in 0.00 s sfepy: nls: iter: 0, residual: 3.587850e+00 (rel: 1.000000e+00) sfepy: rezidual: 0.01 [s] sfepy: solve: 1.34 [s] sfepy: matrix: 0.02 [s] sfepy: nls: iter: 1, residual: 1.554473e-14 (rel: 4.332602e-15) ... rezidual: 0.01 [s] ... solve: 1.34 [s] ... matrix: 0.02 [s] ... condition: 0, err0: 3.588e+00, err: 1.554e-14 ... i00 ls.pyamg ruge_stuben_solver ... matrix size: (9511, 9511) ... nnz: 132239 ... solver failed: ... cannot import pyamg! ... i01 ls.pyamg smoothed_aggregation_solver ... matrix size: (9511, 9511) ... nnz: 132239 ... solver failed: ... cannot import pyamg! ... i10 ls.petsc cg icc ... matrix size: (9511, 9511) ... nnz: 132239 sfepy: updating materials... sfepy: coef sfepy: ...done in 0.00 s sfepy: nls: iter: 0, residual: 3.587850e+00 (rel: 1.000000e+00) sfepy: rezidual: 0.01 [s] sfepy: solve: 0.09 [s] sfepy: matrix: 0.02 [s] sfepy: nls: iter: 1, residual: 2.427756e-12 (rel: 6.766603e-13) ... rezidual: 0.00 [s] ... solve: 0.09 [s] ... matrix: 0.02 [s] ... condition: 0, err0: 3.588e+00, err: 2.428e-12 ... i20 ls.scipy_iterative cg ... matrix size: (9511, 9511) ... nnz: 132239 sfepy: updating materials... sfepy: coef sfepy: ...done in 0.00 s sfepy: nls: iter: 0, residual: 3.587850e+00 (rel: 1.000000e+00) sfepy: cg convergence: 0 (successful exit) sfepy: rezidual: 0.02 [s] sfepy: solve: 0.05 [s] sfepy: matrix: 0.02 [s] sfepy: nls: iter: 1, residual: 3.287606e-12 (rel: 9.163164e-13) ... rezidual: 0.00 [s] ... solve: 0.05 [s] ... matrix: 0.02 [s] ... condition: 0, err0: 3.588e+00, err: 3.288e-12 ... i21 ls.scipy_iterative bicgstab ... matrix size: (9511, 9511) ... nnz: 132239 sfepy: updating materials... sfepy: coef sfepy: ...done in 0.00 s sfepy: nls: iter: 0, residual: 3.587850e+00 (rel: 1.000000e+00) sfepy: bicgstab convergence: 0 (successful exit) sfepy: rezidual: 0.01 [s] sfepy: solve: 0.07 [s] sfepy: matrix: 0.02 [s] sfepy: nls: iter: 1, residual: 2.835370e-12 (rel: 7.902699e-13) ... rezidual: 0.01 [s] ... solve: 0.07 [s] ... matrix: 0.02 [s] ... condition: 0, err0: 3.588e+00, err: 2.835e-12 ... i22 ls.scipy_iterative qmr ... matrix size: (9511, 9511) ... nnz: 132239 sfepy: updating materials... sfepy: coef sfepy: ...done in 0.00 s sfepy: nls: iter: 0, residual: 3.587850e+00 (rel: 1.000000e+00) sfepy: qmr convergence: 0 (successful exit) sfepy: rezidual: 0.01 [s] sfepy: solve: 0.11 [s] sfepy: matrix: 0.02 [s] sfepy: nls: iter: 1, residual: 3.549567e-12 (rel: 9.893297e-13) ... rezidual: 0.01 [s] ... solve: 0.11 [s] ... matrix: 0.02 [s] ... condition: 0, err0: 3.588e+00, err: 3.550e-12 ... solution times (rezidual norms): ... 0.05 [s] (3.288e-12) : i20 ls.scipy_iterative cg ... 0.07 [s] (2.835e-12) : i21 ls.scipy_iterative bicgstab ... 0.09 [s] (2.428e-12) : i10 ls.petsc cg icc ... 0.11 [s] (3.550e-12) : i22 ls.scipy_iterative qmr ... 1.34 [s] (1.554e-14) : d01 ls.scipy_direct superlu ... 1.49 [s] (4.898e-15) : d00 ls.scipy_direct umfpack ... 10000000000.00 [s] (1.000e+10) : i00 ls.pyamg ruge_stuben_solver ... 10000000000.00 [s] (1.000e+10) : i01 ls.pyamg smoothed_aggregation_solver +++ test_solvers: ok >>> all passed in 5.02 s 1 test file(s) executed in 5.02 s, 0 failure(s) of 1 test(s) WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! Option left: name:-sub_pc_type (no value) gmh@calx039$

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Explicit FEM analysis
by nayan...＠gmail.com 15 Dec '15

15 Dec '15

Dear Robert, Which linear and nonlinear solver should I use in case of Explicit FEM analysis? Regards, Nayan

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Re: [sfepy-devel] Non linear Poisson Equation
by Robert Cimrman 14 Dec '15

14 Dec '15

Hi Francesca, On 12/10/2015 11:41 AM, Francesca Camorrino wrote: > Hello! > I'm trying to solve Poisson equation with Sfepy in a very simple domain, > but I found some problem: > 1) I need triangular mesh on a rectangular/square domain For this, you can try gmsh. Why do you need triangles, by the way? > 2) I have null von neumann conditions ( and I omitted them in boundary > condition) like in the > discussion https://groups.google.com/forum/#!searchin/sfepy-devel/null$20von$20neumann… OK > 3)I know that this problem have many convergence problem, in one of this > case is the simulation successful? Or I find some error? You fix the potential in some, so it should work fine. But your definition for region 'p' selects nothing for the mesh you generate - try 'p' : ('vertices in (x <= 0.99951 )', 'vertex'), instead. Always verify your regions using --save-regions-as-groups option: ./simple.py prob_desc_file.py --save-regions-as-groups - then check the 0_regions.vtk file using postproc.py. > I don't know because the simulation is successful but in the postprocessing > the result isn't correct > I attach the problem description file too. If you want I would like some > advice about my problem When I run your code, it does not do anything, because there is no load - maybe some right-hand side term is missing? Or provide a Dirichlet BC also in the region 'n' (again, fix the region definition). r. PS: I missed your message, so my reply is late.

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