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July 2007
- 88 participants
- 85 discussions
Hi all,
I have a few cases where an output array with samples for a linear envelope
should be composed by several linear segments, each one the output of arange
o linspace. It would be preferable in terms of performance to write this
segments directly to subviews of the output array instead of generating
temporary arrays and then copying them to the final one. So why don't
provide output arguments for arange and linspace?
Thank you in advance.
Cheers,
Carlos
1
0
Hi all,
I have a few cases where an output array with samples for a linear envelope
should be composed by several linear segments, each one the output of arange
o linspace. It would be preferable in terms of performance to write this
segments directly to subviews of the output array instead of generating
temporary arrays and then copying them to the final one. So why don't
provide output arguments for arange and linspace?
Thank you in advance.
Cheers,
Carlos
1
0
Hi,
Suppose I'm on a little-edian system.
Could I have a little-endian numpy array arr, where
arr.dtype.byteorder
would actually be "<"
instead of "=" !?
There are two kinds of systems: little edian and big endian.
But there are three possible byteorder values: "<", ">" and "="
I assume that if arr.dtype.byteorder is "="
then, even on a little endian system
the comparison arr.dtype.byteorder == "<" still fails !?
Or are the == and != operators overloaded !?
Thanks,
Sebastian Haase
2
4
Just realized this might be important .... I'm using Python2.5.1
1
0
Running from numpy source directory.
F2PY Version 2_3875
blas_opt_info:
blas_mkl_info:
( library_dirs = /u/vento0/myeates/lib )
( include_dirs = /u/vento0/myeates/include )
(paths: )
(paths: )
(paths: )
(paths: )
(paths: )
(paths: )
libraries mkl,vml,guide not found in /u/vento0/myeates/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
( library_dirs = /u/vento0/myeates/lib )
(paths: )
(paths: )
(paths: /u/vento0/myeates/lib/libptf77blas.a)
(paths: )
(paths: /u/vento0/myeates/lib/libptcblas.a)
(paths: )
(paths: /u/vento0/myeates/lib/libatlas.a)
Setting PTATLAS=ATLAS
( include_dirs = /u/vento0/myeates/include )
(paths: /u/vento0/myeates/include/atlas)
(paths: /u/vento0/myeates/include/cblas.h)
Setting PTATLAS=ATLAS
( library_dirs = /u/vento0/myeates/lib )
(paths: )
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/u/vento0/myeates/lib']
language = c
include_dirs = ['/u/vento0/myeates/include']
new_compiler returns distutils.unixccompiler.UnixCCompiler
customize GnuFCompiler
find_executable('gfortran')
Found executable /u/vento0/myeates/bin/gfortran
gnu: no Fortran 90 compiler found
find_executable('g77')
Found executable /usr/bin/g77
gnu: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran --version',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/H-vRSk ) > /u/vento0/myeates/tmp/tmpLMMu5C/Yd7QL7 2>&1')
_update_environment(...)
exec_command(['gfortran', '-g', '-Wall', '-fno-second-underscore', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -g -Wall -fno-second-underscore -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/d_szfA ) > /u/vento0/myeates/tmp/tmpLMMu5C/fZ5ec4 2>&1')
_update_environment(...)
customize IntelFCompiler
find_executable('ifort')
Could not locate executable ifort
find_executable('ifc')
Could not locate executable ifc
intel: no Fortran 90 compiler found
intel: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/74gWvu.f -o /u/vento0/myeates/tmp/tmpLMMu5C/74gWvu.o',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/74gWvu.f -o /u/vento0/myeates/tmp/tmpLMMu5C/74gWvu.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/AHIIwF ) > /u/vento0/myeates/tmp/tmpLMMu5C/Fi1kn7 2>&1')
_update_environment(...)
customize LaheyFCompiler
find_executable('lf95')
Could not locate executable lf95
lahey: no Fortran 90 compiler found
lahey: no Fortran 90 compiler found
customize PGroupFCompiler
find_executable('pgf90')
Could not locate executable pgf90
pg: no Fortran 90 compiler found
pg: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran -V 2>/dev/null',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran -V 2>/dev/null ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/kGF8Rq ) > /u/vento0/myeates/tmp/tmpLMMu5C/NtOI3R 2>&1')
_update_environment(...)
customize AbsoftFCompiler
find_executable('f90')
Could not locate executable f90
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
customize NAGFCompiler
find_executable('f95')
Found executable /usr/bin/f95
exec_command('/usr/bin/f95 -V',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /usr/bin/f95 -V ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/NKg7zm ) > /u/vento0/myeates/tmp/tmpLMMu5C/x2jghP 2>&1')
_update_environment(...)
customize VastFCompiler
exec_command('vf90 -v',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( vf90 -v ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/KTkOOb ) > /u/vento0/myeates/tmp/tmpLMMu5C/tzT59j 2>&1')
_update_environment(...)
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran --version',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/I96QMG ) > /u/vento0/myeates/tmp/tmpLMMu5C/uQzJd6 2>&1')
_update_environment(...)
exec_command(['gfortran', '-g', '-Wall', '-fno-second-underscore', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -g -Wall -fno-second-underscore -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/ERt5Q- ) > /u/vento0/myeates/tmp/tmpLMMu5C/wjhtP_ 2>&1')
_update_environment(...)
exec_command(['gfortran', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/qZPmMe ) > /u/vento0/myeates/tmp/tmpLMMu5C/synxJq 2>&1')
_update_environment(...)
customize CompaqFCompiler
find_executable('fort')
Could not locate executable fort
compaq: no Fortran 90 compiler found
compaq: no Fortran 90 compiler found
customize IntelItaniumFCompiler
find_executable('efort')
Could not locate executable efort
find_executable('efc')
Could not locate executable efc
intele: no Fortran 90 compiler found
intele: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/a01XSs.f -o /u/vento0/myeates/tmp/tmpLMMu5C/a01XSs.o',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/a01XSs.f -o /u/vento0/myeates/tmp/tmpLMMu5C/a01XSs.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/79gEEW ) > /u/vento0/myeates/tmp/tmpLMMu5C/n7Ivyf 2>&1')
_update_environment(...)
customize IntelEM64TFCompiler
intelem: no Fortran 90 compiler found
intelem: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/I9X-ZK.f -o /u/vento0/myeates/tmp/tmpLMMu5C/I9X-ZK.o',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/I9X-ZK.f -o /u/vento0/myeates/tmp/tmpLMMu5C/I9X-ZK.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/b2Erz4 ) > /u/vento0/myeates/tmp/tmpLMMu5C/dI6JCf 2>&1')
_update_environment(...)
customize Gnu95FCompiler
exec_command('/u/vento0/myeates/bin/gfortran --version',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/gLsenB ) > /u/vento0/myeates/tmp/tmpLMMu5C/02KDUq 2>&1')
_update_environment(...)
exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/lLmpG0 ) > /u/vento0/myeates/tmp/tmpLMMu5C/FAS9YE 2>&1')
_update_environment(...)
customize Gnu95FCompiler
exec_command('/u/vento0/myeates/bin/gfortran --version',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/YOA7z8 ) > /u/vento0/myeates/tmp/tmpLMMu5C/Hc_ucY 2>&1')
_update_environment(...)
exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/F1wTPM ) > /u/vento0/myeates/tmp/tmpLMMu5C/tZDD78 2>&1')
_update_environment(...)
customize Gnu95FCompiler using config
********************************************************************************
numpy.distutils.fcompiler.gnu.Gnu95FCompiler
compiler_f77 = ['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
compiler_fix = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
ranlib = ['/u/vento0/myeates/bin/gfortran']
linker_exe = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall']
archiver = ['/u/vento0/myeates/bin/gfortran', '-cr']
version_cmd = ['/u/vento0/myeates/bin/gfortran', '--version']
linker_so = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall', '-shared']
compiler_f90 = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
version = LooseVersion ('4.2.0')
libraries = ['gfortran']
library_dirs = []
object_switch = '-o '
compile_switch = '-c'
include_dirs = []
********************************************************************************
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-c'
gcc: _configtest.c
exec_command(['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes', '-fPIC', '-c', '_configtest.c', '-o', '_configtest.o'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/B-Auj9 ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/d56lI5 ')
_update_environment(...)
gcc -pthread _configtest.o -L/u/vento0/myeates/lib -lptf77blas -lptcblas -latlas -o _configtest
exec_command(['gcc', '-pthread', '_configtest.o', '-L/u/vento0/myeates/lib', '-lptf77blas', '-lptcblas', '-latlas', '-o', '_configtest'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gcc -pthread _configtest.o -L/u/vento0/myeates/lib -lptf77blas -lptcblas -latlas -o _configtest ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/MpN72s ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/CJjxty ')
_update_environment(...)
exec_command('./_configtest',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( ./_configtest ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/guY8sT ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/BuHCk9 ')
ATLAS version 3.7.34 built by myeates on Sat Jun 30 07:21:04 PDT 2007:
UNAME : Linux mu.jpl.nasa.gov 2.6.17-5mdv #1 SMP Wed Sep 13 14:28:02 EDT 2006 x86_64 Dual-Core AMD Opteron(tm) Processor 2220 SE GNU/Linux
INSTFLG : -1 0 -a 1
ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_HAMMER -DATL_CPUMHZ=2800 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_3DNow -DATL_USE64BITS -DATL_GAS_x8664
F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
CACHEEDGE: 524288
F77 : gfortran, version GNU Fortran (GCC) 4.2.0
F77FLAGS : -O -m64
SMC : gcc, version gcc (GCC) 4.2.0
SMCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -m64
SKC : gcc, version gcc (GCC) 4.2.0
SKCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -m64
_update_environment(...)
success!
removing: _configtest.c _configtest.o _configtest
( library_dirs = /u/vento0/myeates/lib )
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/u/vento0/myeates/lib']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.7.34\\""')]
include_dirs = ['/u/vento0/myeates/include']
lapack_opt_info:
lapack_mkl_info:
mkl_info:
( library_dirs = /u/vento0/myeates/lib )
( include_dirs = /u/vento0/myeates/include )
(paths: )
(paths: )
(paths: )
(paths: )
(paths: )
(paths: )
libraries mkl,vml,guide not found in /u/vento0/myeates/lib
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
( library_dirs = /u/vento0/myeates/lib )
(paths: )
(paths: )
(paths: /u/vento0/myeates/lib/libptf77blas.a)
(paths: )
(paths: /u/vento0/myeates/lib/libptcblas.a)
(paths: )
(paths: /u/vento0/myeates/lib/libatlas.a)
(paths: )
(paths: )
libraries lapack_atlas not found in /u/vento0/myeates/lib
(paths: )
(paths: )
(paths: /u/vento0/myeates/lib/liblapack.a)
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
( include_dirs = /u/vento0/myeates/include )
(paths: /u/vento0/myeates/include/atlas)
(paths: /u/vento0/myeates/include/cblas.h)
Setting PTATLAS=ATLAS
( library_dirs = /u/vento0/myeates/lib )
(paths: )
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/u/vento0/myeates/lib']
language = f77
include_dirs = ['/u/vento0/myeates/include']
new_compiler returns distutils.unixccompiler.UnixCCompiler
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran --version',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/OCLLl7 ) > /u/vento0/myeates/tmp/tmpLMMu5C/H-_Pgq 2>&1')
_update_environment(...)
exec_command(['gfortran', '-g', '-Wall', '-fno-second-underscore', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -g -Wall -fno-second-underscore -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/VHKDTn ) > /u/vento0/myeates/tmp/tmpLMMu5C/bwC_v7 2>&1')
_update_environment(...)
customize IntelFCompiler
intel: no Fortran 90 compiler found
intel: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/e-4hHY.f -o /u/vento0/myeates/tmp/tmpLMMu5C/e-4hHY.o',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/e-4hHY.f -o /u/vento0/myeates/tmp/tmpLMMu5C/e-4hHY.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/a9R240 ) > /u/vento0/myeates/tmp/tmpLMMu5C/hn-ImC 2>&1')
_update_environment(...)
customize LaheyFCompiler
lahey: no Fortran 90 compiler found
lahey: no Fortran 90 compiler found
customize PGroupFCompiler
pg: no Fortran 90 compiler found
pg: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran -V 2>/dev/null',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran -V 2>/dev/null ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/3nk0lG ) > /u/vento0/myeates/tmp/tmpLMMu5C/jEg6GC 2>&1')
_update_environment(...)
customize AbsoftFCompiler
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
absoft: no Fortran 90 compiler found
customize NAGFCompiler
exec_command('/usr/bin/f95 -V',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /usr/bin/f95 -V ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/Q-aL48 ) > /u/vento0/myeates/tmp/tmpLMMu5C/uvRgga 2>&1')
_update_environment(...)
customize VastFCompiler
exec_command('vf90 -v',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( vf90 -v ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/g0Szj_ ) > /u/vento0/myeates/tmp/tmpLMMu5C/mKSG6N 2>&1')
_update_environment(...)
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran --version',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/wikoov ) > /u/vento0/myeates/tmp/tmpLMMu5C/gjbIQY 2>&1')
_update_environment(...)
exec_command(['gfortran', '-g', '-Wall', '-fno-second-underscore', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -g -Wall -fno-second-underscore -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/mruRLr ) > /u/vento0/myeates/tmp/tmpLMMu5C/OmXX9f 2>&1')
_update_environment(...)
exec_command(['gfortran', '-fPIC', '-O2', '-funroll-loops', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -fPIC -O2 -funroll-loops -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/Fn57SO ) > /u/vento0/myeates/tmp/tmpLMMu5C/0DfaIZ 2>&1')
_update_environment(...)
customize CompaqFCompiler
compaq: no Fortran 90 compiler found
compaq: no Fortran 90 compiler found
customize IntelItaniumFCompiler
intele: no Fortran 90 compiler found
intele: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/esyZZT.f -o /u/vento0/myeates/tmp/tmpLMMu5C/esyZZT.o',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/esyZZT.f -o /u/vento0/myeates/tmp/tmpLMMu5C/esyZZT.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/kriUi2 ) > /u/vento0/myeates/tmp/tmpLMMu5C/ch14hM 2>&1')
_update_environment(...)
customize IntelEM64TFCompiler
intelem: no Fortran 90 compiler found
intelem: no Fortran 90 compiler found
exec_command('/u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/kSRwIK.f -o /u/vento0/myeates/tmp/tmpLMMu5C/kSRwIK.o',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran -FI -V -c /u/vento0/myeates/tmp/tmpLMMu5C/kSRwIK.f -o /u/vento0/myeates/tmp/tmpLMMu5C/kSRwIK.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/eaPIf_ ) > /u/vento0/myeates/tmp/tmpLMMu5C/TnJiVS 2>&1')
_update_environment(...)
customize Gnu95FCompiler
exec_command('/u/vento0/myeates/bin/gfortran --version',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/wvSK7- ) > /u/vento0/myeates/tmp/tmpLMMu5C/nUO1Kp 2>&1')
_update_environment(...)
exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/2QQQFY ) > /u/vento0/myeates/tmp/tmpLMMu5C/2TLQzp 2>&1')
_update_environment(...)
customize Gnu95FCompiler
exec_command('/u/vento0/myeates/bin/gfortran --version',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/A0DmWo ) > /u/vento0/myeates/tmp/tmpLMMu5C/ASrh0F 2>&1')
_update_environment(...)
exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/VwDuFd ) > /u/vento0/myeates/tmp/tmpLMMu5C/ocIVDi 2>&1')
_update_environment(...)
customize Gnu95FCompiler using config
********************************************************************************
numpy.distutils.fcompiler.gnu.Gnu95FCompiler
compiler_f77 = ['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
compiler_fix = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
ranlib = ['/u/vento0/myeates/bin/gfortran']
linker_exe = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall']
archiver = ['/u/vento0/myeates/bin/gfortran', '-cr']
version_cmd = ['/u/vento0/myeates/bin/gfortran', '--version']
linker_so = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall', '-shared']
compiler_f90 = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
version = LooseVersion ('4.2.0')
libraries = ['gfortran']
library_dirs = []
object_switch = '-o '
compile_switch = '-c'
include_dirs = []
********************************************************************************
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-c'
gcc: _configtest.c
exec_command(['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes', '-fPIC', '-c', '_configtest.c', '-o', '_configtest.o'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/Xxndg2 ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/8in3PJ ')
_update_environment(...)
gcc -pthread _configtest.o -L/u/vento0/myeates/lib -llapack -lptf77blas -lptcblas -latlas -o _configtest
exec_command(['gcc', '-pthread', '_configtest.o', '-L/u/vento0/myeates/lib', '-llapack', '-lptf77blas', '-lptcblas', '-latlas', '-o', '_configtest'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gcc -pthread _configtest.o -L/u/vento0/myeates/lib -llapack -lptf77blas -lptcblas -latlas -o _configtest ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/LUsSBg ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/QYn69k ')
_update_environment(...)
exec_command('./_configtest',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( ./_configtest ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/eqP6-0 ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/IWTPqL ')
ATLAS version 3.7.34 built by myeates on Sat Jun 30 07:21:04 PDT 2007:
UNAME : Linux mu.jpl.nasa.gov 2.6.17-5mdv #1 SMP Wed Sep 13 14:28:02 EDT 2006 x86_64 Dual-Core AMD Opteron(tm) Processor 2220 SE GNU/Linux
INSTFLG : -1 0 -a 1
ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_HAMMER -DATL_CPUMHZ=2800 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_3DNow -DATL_USE64BITS -DATL_GAS_x8664
F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
CACHEEDGE: 524288
F77 : gfortran, version GNU Fortran (GCC) 4.2.0
F77FLAGS : -O -m64
SMC : gcc, version gcc (GCC) 4.2.0
SMCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -m64
SKC : gcc, version gcc (GCC) 4.2.0
SKCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -m64
_update_environment(...)
success!
removing: _configtest.c _configtest.o _configtest
( library_dirs = /u/vento0/myeates/lib )
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/u/vento0/myeates/lib']
language = f77
define_macros = [('ATLAS_INFO', '"\\"3.7.34\\""')]
include_dirs = ['/u/vento0/myeates/include']
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running build_src
building py_modules sources
building extension "numpy.core.multiarray" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/config.h' to sources.
executing numpy/core/code_generators/generate_array_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/src' to include_dirs.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/src/scalartypes.inc', 'build/src.linux-x86_64-2.5/numpy/core/src/arraytypes.inc', 'build/src.linux-x86_64-2.5/numpy/core/config.h', 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h']
building extension "numpy.core.umath" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/config.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/__ufunc_api.h' to sources.
adding 'build/src.linux-x86_64-2.5/numpy/core/src' to include_dirs.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/src/scalartypes.inc', 'build/src.linux-x86_64-2.5/numpy/core/src/arraytypes.inc', 'build/src.linux-x86_64-2.5/numpy/core/config.h', 'build/src.linux-x86_64-2.5/numpy/core/__ufunc_api.h']
building extension "numpy.core._sort" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/config.h' to sources.
executing numpy/core/code_generators/generate_array_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/config.h', 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h']
building extension "numpy.core.scalarmath" sources
adding 'build/src.linux-x86_64-2.5/numpy/core/config.h' to sources.
executing numpy/core/code_generators/generate_array_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
adding 'build/src.linux-x86_64-2.5/numpy/core/__ufunc_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.5/numpy/core/config.h', 'build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h', 'build/src.linux-x86_64-2.5/numpy/core/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
adding 'numpy/core/blasdot/_dotblas.c' to sources.
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
adding 'numpy/linalg/lapack_litemodule.c' to sources.
building extension "numpy.random.mtrand" sources
new_compiler returns distutils.unixccompiler.UnixCCompiler
customize Gnu95FCompiler
exec_command('/u/vento0/myeates/bin/gfortran --version',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/TGqdfc ) > /u/vento0/myeates/tmp/tmpLMMu5C/Jp4FUn 2>&1')
_update_environment(...)
exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/vR92oh ) > /u/vento0/myeates/tmp/tmpLMMu5C/Fwz0tx 2>&1')
_update_environment(...)
customize Gnu95FCompiler using config
********************************************************************************
numpy.distutils.fcompiler.gnu.Gnu95FCompiler
compiler_f77 = ['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
compiler_fix = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
ranlib = ['/u/vento0/myeates/bin/gfortran']
linker_exe = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall']
archiver = ['/u/vento0/myeates/bin/gfortran', '-cr']
version_cmd = ['/u/vento0/myeates/bin/gfortran', '--version']
linker_so = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall', '-shared']
compiler_f90 = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
version = LooseVersion ('4.2.0')
libraries = ['gfortran']
library_dirs = []
object_switch = '-o '
compile_switch = '-c'
include_dirs = ['numpy/core/src', 'numpy/core/include', '/u/vento0/myeates/include/python2.5']
********************************************************************************
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Inumpy/core/src -Inumpy/core/include -I/u/vento0/myeates/include/python2.5 -c'
gcc: _configtest.c
exec_command(['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes', '-fPIC', '-Inumpy/core/src', '-Inumpy/core/include', '-I/u/vento0/myeates/include/python2.5', '-c', '_configtest.c', '-o', '_configtest.o'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC -Inumpy/core/src -Inumpy/core/include -I/u/vento0/myeates/include/python2.5 -c _configtest.c -o _configtest.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/tG_OdT ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/1mNLiu ')
_update_environment(...)
gcc -pthread _configtest.o -o _configtest
exec_command(['gcc', '-pthread', '_configtest.o', '-o', '_configtest'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gcc -pthread _configtest.o -o _configtest ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/WjueIS ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/eTFVrv ')
_update_environment(...)
_configtest
failure.
removing: _configtest.c _configtest.o _configtest
building data_files sources
running build_py
not copying numpy/_import_tools.py (output up-to-date)
not copying numpy/ctypeslib.py (output up-to-date)
not copying numpy/__init__.py (output up-to-date)
not copying numpy/setup.py (output up-to-date)
not copying numpy/matlib.py (output up-to-date)
not copying numpy/add_newdocs.py (output up-to-date)
not copying numpy/dual.py (output up-to-date)
not copying numpy/version.py (output up-to-date)
copying build/src.linux-x86_64-2.5/numpy/__config__.py -> build/lib.linux-x86_64-2.5/numpy
not copying numpy/distutils/misc_util.py (output up-to-date)
not copying numpy/distutils/core.py (output up-to-date)
not copying numpy/distutils/__init__.py (output up-to-date)
not copying numpy/distutils/info.py (output up-to-date)
not copying numpy/distutils/intelccompiler.py (output up-to-date)
not copying numpy/distutils/from_template.py (output up-to-date)
not copying numpy/distutils/line_endings.py (output up-to-date)
not copying numpy/distutils/system_info.py (output up-to-date)
not copying numpy/distutils/conv_template.py (output up-to-date)
not copying numpy/distutils/setup.py (output up-to-date)
not copying numpy/distutils/cpuinfo.py (output up-to-date)
not copying numpy/distutils/environment.py (output up-to-date)
not copying numpy/distutils/lib2def.py (output up-to-date)
not copying numpy/distutils/interactive.py (output up-to-date)
not copying numpy/distutils/extension.py (output up-to-date)
not copying numpy/distutils/__version__.py (output up-to-date)
not copying numpy/distutils/ccompiler.py (output up-to-date)
not copying numpy/distutils/log.py (output up-to-date)
not copying numpy/distutils/mingw32ccompiler.py (output up-to-date)
not copying numpy/distutils/unixccompiler.py (output up-to-date)
not copying numpy/distutils/exec_command.py (output up-to-date)
copying build/src.linux-x86_64-2.5/numpy/distutils/__config__.py -> build/lib.linux-x86_64-2.5/numpy/distutils
not copying numpy/distutils/command/config_compiler.py (output up-to-date)
not copying numpy/distutils/command/build_clib.py (output up-to-date)
not copying numpy/distutils/command/egg_info.py (output up-to-date)
not copying numpy/distutils/command/__init__.py (output up-to-date)
not copying numpy/distutils/command/build.py (output up-to-date)
not copying numpy/distutils/command/build_ext.py (output up-to-date)
not copying numpy/distutils/command/install_headers.py (output up-to-date)
not copying numpy/distutils/command/install_data.py (output up-to-date)
not copying numpy/distutils/command/build_scripts.py (output up-to-date)
not copying numpy/distutils/command/bdist_rpm.py (output up-to-date)
not copying numpy/distutils/command/config.py (output up-to-date)
not copying numpy/distutils/command/build_src.py (output up-to-date)
not copying numpy/distutils/command/install.py (output up-to-date)
not copying numpy/distutils/command/sdist.py (output up-to-date)
not copying numpy/distutils/command/build_py.py (output up-to-date)
not copying numpy/distutils/fcompiler/absoft.py (output up-to-date)
not copying numpy/distutils/fcompiler/mips.py (output up-to-date)
not copying numpy/distutils/fcompiler/gnu.py (output up-to-date)
not copying numpy/distutils/fcompiler/intel.py (output up-to-date)
not copying numpy/distutils/fcompiler/vast.py (output up-to-date)
not copying numpy/distutils/fcompiler/__init__.py (output up-to-date)
not copying numpy/distutils/fcompiler/none.py (output up-to-date)
not copying numpy/distutils/fcompiler/compaq.py (output up-to-date)
not copying numpy/distutils/fcompiler/lahey.py (output up-to-date)
not copying numpy/distutils/fcompiler/g95.py (output up-to-date)
not copying numpy/distutils/fcompiler/hpux.py (output up-to-date)
not copying numpy/distutils/fcompiler/nag.py (output up-to-date)
not copying numpy/distutils/fcompiler/sun.py (output up-to-date)
not copying numpy/distutils/fcompiler/pg.py (output up-to-date)
not copying numpy/distutils/fcompiler/ibm.py (output up-to-date)
not copying numpy/testing/numpytest.py (output up-to-date)
not copying numpy/testing/info.py (output up-to-date)
not copying numpy/testing/__init__.py (output up-to-date)
not copying numpy/testing/setup.py (output up-to-date)
not copying numpy/testing/utils.py (output up-to-date)
not copying numpy/f2py/diagnose.py (output up-to-date)
not copying numpy/f2py/capi_maps.py (output up-to-date)
not copying numpy/f2py/rules.py (output up-to-date)
not copying numpy/f2py/info.py (output up-to-date)
not copying numpy/f2py/common_rules.py (output up-to-date)
not copying numpy/f2py/auxfuncs.py (output up-to-date)
not copying numpy/f2py/cb_rules.py (output up-to-date)
not copying numpy/f2py/__init__.py (output up-to-date)
not copying numpy/f2py/setup.py (output up-to-date)
not copying numpy/f2py/use_rules.py (output up-to-date)
not copying numpy/f2py/f90mod_rules.py (output up-to-date)
not copying numpy/f2py/f2py2e.py (output up-to-date)
not copying numpy/f2py/f2py_testing.py (output up-to-date)
not copying numpy/f2py/func2subr.py (output up-to-date)
not copying numpy/f2py/crackfortran.py (output up-to-date)
not copying numpy/f2py/cfuncs.py (output up-to-date)
not copying numpy/f2py/__version__.py (output up-to-date)
copying numpy/f2py/__svn_version__.py -> build/lib.linux-x86_64-2.5/numpy/f2py
not copying numpy/f2py/lib/__init__.py (output up-to-date)
not copying numpy/f2py/lib/api.py (output up-to-date)
not copying numpy/f2py/lib/nary.py (output up-to-date)
not copying numpy/f2py/lib/wrapper_base.py (output up-to-date)
not copying numpy/f2py/lib/setup.py (output up-to-date)
not copying numpy/f2py/lib/py_wrap.py (output up-to-date)
not copying numpy/f2py/lib/py_wrap_type.py (output up-to-date)
not copying numpy/f2py/lib/py_wrap_subprogram.py (output up-to-date)
not copying numpy/f2py/lib/main.py (output up-to-date)
not copying numpy/f2py/lib/parser/block_statements.py (output up-to-date)
not copying numpy/f2py/lib/parser/test_parser.py (output up-to-date)
not copying numpy/f2py/lib/parser/pattern_tools.py (output up-to-date)
not copying numpy/f2py/lib/parser/__init__.py (output up-to-date)
not copying numpy/f2py/lib/parser/utils.py (output up-to-date)
not copying numpy/f2py/lib/parser/parsefortran.py (output up-to-date)
not copying numpy/f2py/lib/parser/splitline.py (output up-to-date)
not copying numpy/f2py/lib/parser/test_Fortran2003.py (output up-to-date)
not copying numpy/f2py/lib/parser/readfortran.py (output up-to-date)
not copying numpy/f2py/lib/parser/api.py (output up-to-date)
not copying numpy/f2py/lib/parser/sourceinfo.py (output up-to-date)
not copying numpy/f2py/lib/parser/typedecl_statements.py (output up-to-date)
not copying numpy/f2py/lib/parser/Fortran2003.py (output up-to-date)
not copying numpy/f2py/lib/parser/statements.py (output up-to-date)
not copying numpy/f2py/lib/parser/base_classes.py (output up-to-date)
not copying numpy/core/__init__.py (output up-to-date)
not copying numpy/core/info.py (output up-to-date)
not copying numpy/core/ma.py (output up-to-date)
not copying numpy/core/defchararray.py (output up-to-date)
not copying numpy/core/arrayprint.py (output up-to-date)
not copying numpy/core/records.py (output up-to-date)
not copying numpy/core/setup.py (output up-to-date)
not copying numpy/core/fromnumeric.py (output up-to-date)
not copying numpy/core/numeric.py (output up-to-date)
not copying numpy/core/_internal.py (output up-to-date)
not copying numpy/core/memmap.py (output up-to-date)
not copying numpy/core/defmatrix.py (output up-to-date)
not copying numpy/core/numerictypes.py (output up-to-date)
not copying numpy/core/__svn_version__.py (output up-to-date)
not copying numpy/core/code_generators/generate_array_api.py (output up-to-date)
not copying numpy/core/__init__.py (output up-to-date)
not copying numpy/core/info.py (output up-to-date)
not copying numpy/core/ma.py (output up-to-date)
not copying numpy/core/defchararray.py (output up-to-date)
not copying numpy/core/arrayprint.py (output up-to-date)
not copying numpy/core/records.py (output up-to-date)
not copying numpy/core/setup.py (output up-to-date)
not copying numpy/core/fromnumeric.py (output up-to-date)
not copying numpy/core/numeric.py (output up-to-date)
not copying numpy/core/_internal.py (output up-to-date)
not copying numpy/core/memmap.py (output up-to-date)
not copying numpy/core/defmatrix.py (output up-to-date)
not copying numpy/core/numerictypes.py (output up-to-date)
not copying numpy/core/__svn_version__.py (output up-to-date)
not copying numpy/lib/shape_base.py (output up-to-date)
not copying numpy/lib/scimath.py (output up-to-date)
not copying numpy/lib/twodim_base.py (output up-to-date)
not copying numpy/lib/machar.py (output up-to-date)
not copying numpy/lib/info.py (output up-to-date)
not copying numpy/lib/arraysetops.py (output up-to-date)
not copying numpy/lib/__init__.py (output up-to-date)
not copying numpy/lib/setup.py (output up-to-date)
not copying numpy/lib/utils.py (output up-to-date)
not copying numpy/lib/getlimits.py (output up-to-date)
not copying numpy/lib/convdtype.py (output up-to-date)
not copying numpy/lib/user_array.py (output up-to-date)
not copying numpy/lib/type_check.py (output up-to-date)
not copying numpy/lib/function_base.py (output up-to-date)
not copying numpy/lib/polynomial.py (output up-to-date)
not copying numpy/lib/ufunclike.py (output up-to-date)
not copying numpy/lib/index_tricks.py (output up-to-date)
not copying numpy/oldnumeric/user_array.py (output up-to-date)
not copying numpy/oldnumeric/precision.py (output up-to-date)
not copying numpy/oldnumeric/misc.py (output up-to-date)
not copying numpy/oldnumeric/ma.py (output up-to-date)
not copying numpy/oldnumeric/__init__.py (output up-to-date)
not copying numpy/oldnumeric/setup.py (output up-to-date)
not copying numpy/oldnumeric/ufuncs.py (output up-to-date)
not copying numpy/oldnumeric/matrix.py (output up-to-date)
not copying numpy/oldnumeric/rng_stats.py (output up-to-date)
not copying numpy/oldnumeric/typeconv.py (output up-to-date)
not copying numpy/oldnumeric/functions.py (output up-to-date)
not copying numpy/oldnumeric/mlab.py (output up-to-date)
not copying numpy/oldnumeric/fix_default_axis.py (output up-to-date)
not copying numpy/oldnumeric/random_array.py (output up-to-date)
not copying numpy/oldnumeric/compat.py (output up-to-date)
not copying numpy/oldnumeric/fft.py (output up-to-date)
not copying numpy/oldnumeric/linear_algebra.py (output up-to-date)
not copying numpy/oldnumeric/array_printer.py (output up-to-date)
not copying numpy/oldnumeric/alter_code1.py (output up-to-date)
not copying numpy/oldnumeric/alter_code2.py (output up-to-date)
not copying numpy/oldnumeric/arrayfns.py (output up-to-date)
not copying numpy/oldnumeric/rng.py (output up-to-date)
not copying numpy/numarray/random_array.py (output up-to-date)
not copying numpy/numarray/convolve.py (output up-to-date)
not copying numpy/numarray/ma.py (output up-to-date)
not copying numpy/numarray/__init__.py (output up-to-date)
not copying numpy/numarray/setup.py (output up-to-date)
not copying numpy/numarray/nd_image.py (output up-to-date)
not copying numpy/numarray/ufuncs.py (output up-to-date)
not copying numpy/numarray/matrix.py (output up-to-date)
not copying numpy/numarray/functions.py (output up-to-date)
not copying numpy/numarray/mlab.py (output up-to-date)
not copying numpy/numarray/util.py (output up-to-date)
not copying numpy/numarray/compat.py (output up-to-date)
not copying numpy/numarray/fft.py (output up-to-date)
not copying numpy/numarray/image.py (output up-to-date)
not copying numpy/numarray/linear_algebra.py (output up-to-date)
not copying numpy/numarray/alter_code1.py (output up-to-date)
not copying numpy/numarray/alter_code2.py (output up-to-date)
not copying numpy/numarray/session.py (output up-to-date)
not copying numpy/numarray/numerictypes.py (output up-to-date)
not copying numpy/fft/info.py (output up-to-date)
not copying numpy/fft/setup.py (output up-to-date)
not copying numpy/fft/fftpack.py (output up-to-date)
not copying numpy/fft/__init__.py (output up-to-date)
not copying numpy/fft/helper.py (output up-to-date)
not copying numpy/linalg/info.py (output up-to-date)
not copying numpy/linalg/__init__.py (output up-to-date)
not copying numpy/linalg/setup.py (output up-to-date)
not copying numpy/linalg/linalg.py (output up-to-date)
not copying numpy/random/__init__.py (output up-to-date)
not copying numpy/random/info.py (output up-to-date)
not copying numpy/random/setup.py (output up-to-date)
running build_ext
new_compiler returns distutils.unixccompiler.UnixCCompiler
customize UnixCCompiler
customize UnixCCompiler using build_ext
********************************************************************************
distutils.unixccompiler.UnixCCompiler
compiler_cxx = ['g++', '-pthread']
ranlib = None
linker_exe = ['gcc', '-pthread']
compiler_so = ['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes', '-fPIC']
archiver = ['ar', '-cr']
preprocessor = ['gcc', '-pthread', '-E']
linker_so = ['gcc', '-pthread', '-shared']
compiler = ['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes']
libraries = []
library_dirs = []
include_dirs = ['numpy/core/src', 'numpy/core/include', '/u/vento0/myeates/include/python2.5']
********************************************************************************
customize Gnu95FCompiler
exec_command('/u/vento0/myeates/bin/gfortran --version',)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( /u/vento0/myeates/bin/gfortran --version ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/PEs4_F ) > /u/vento0/myeates/tmp/tmpLMMu5C/krrA6w 2>&1')
_update_environment(...)
exec_command(['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse', '-print-libgcc-file-name'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops -march=opteron -mmmx -m3dnow -msse2 -msse -print-libgcc-file-name ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/qq9gdt ) > /u/vento0/myeates/tmp/tmpLMMu5C/Eb75jq 2>&1')
_update_environment(...)
customize Gnu95FCompiler using build_ext
********************************************************************************
numpy.distutils.fcompiler.gnu.Gnu95FCompiler
compiler_f77 = ['gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
compiler_fix = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-ffixed-form', '-fno-second-underscore', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
ranlib = ['/u/vento0/myeates/bin/gfortran']
linker_exe = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall']
archiver = ['/u/vento0/myeates/bin/gfortran', '-cr']
version_cmd = ['/u/vento0/myeates/bin/gfortran', '--version']
linker_so = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-Wall', '-shared']
compiler_f90 = ['/u/vento0/myeates/bin/gfortran', '-Wall', '-fno-second-underscore', '-fPIC', '-O3', '-funroll-loops', '-march=opteron', '-mmmx', '-m3dnow', '-msse2', '-msse']
version = LooseVersion ('4.2.0')
libraries = ['gfortran']
library_dirs = []
object_switch = '-o '
compile_switch = '-c'
include_dirs = ['numpy/core/src', 'numpy/core/include', '/u/vento0/myeates/include/python2.5']
********************************************************************************
building 'numpy.core.multiarray' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Ibuild/src.linux-x86_64-2.5/numpy/core/src -Inumpy/core/include -Ibuild/src.linux-x86_64-2.5/numpy/core -Inumpy/core/src -Inumpy/core/include -I/u/vento0/myeates/include/python2.5 -c'
gcc: numpy/core/src/multiarraymodule.c
exec_command(['gcc', '-pthread', '-fno-strict-aliasing', '-DNDEBUG', '-g', '-O3', '-Wall', '-Wstrict-prototypes', '-fPIC', '-Ibuild/src.linux-x86_64-2.5/numpy/core/src', '-Inumpy/core/include', '-Ibuild/src.linux-x86_64-2.5/numpy/core', '-Inumpy/core/src', '-Inumpy/core/include', '-I/u/vento0/myeates/include/python2.5', '-c', 'numpy/core/src/multiarraymodule.c', '-o', 'build/temp.linux-x86_64-2.5/numpy/core/src/multiarraymodule.o'],)
Retaining cwd: /u/vento0/myeates/numpy
_preserve_environment([])
_update_environment(...)
_exec_command_posix(...)
Running os.system('( gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC -Ibuild/src.linux-x86_64-2.5/numpy/core/src -Inumpy/core/include -Ibuild/src.linux-x86_64-2.5/numpy/core -Inumpy/core/src -Inumpy/core/include -I/u/vento0/myeates/include/python2.5 -c numpy/core/src/multiarraymodule.c -o build/temp.linux-x86_64-2.5/numpy/core/src/multiarraymodule.o ; echo $? > /u/vento0/myeates/tmp/tmpLMMu5C/hVP9_- ) 2>&1 | tee /u/vento0/myeates/tmp/tmpLMMu5C/vOvNwy ')
numpy/core/src/multiarraymodule.c: In function ‘initmultiarray’:
numpy/core/src/multiarraymodule.c:7563: error: ‘NPY_ALLOW_THREADS’ undeclared (first use in this function)
numpy/core/src/multiarraymodule.c:7563: error: (Each undeclared identifier is reported only once
numpy/core/src/multiarraymodule.c:7563: error: for each function it appears in.)
_update_environment(...)
numpy/core/src/multiarraymodule.c: In function ‘initmultiarray’:
numpy/core/src/multiarraymodule.c:7563: error: ‘NPY_ALLOW_THREADS’ undeclared (first use in this function)
numpy/core/src/multiarraymodule.c:7563: error: (Each undeclared identifier is reported only once
numpy/core/src/multiarraymodule.c:7563: error: for each function it appears in.)
error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC -Ibuild/src.linux-x86_64-2.5/numpy/core/src -Inumpy/core/include -Ibuild/src.linux-x86_64-2.5/numpy/core -Inumpy/core/src -Inumpy/core/include -I/u/vento0/myeates/include/python2.5 -c numpy/core/src/multiarraymodule.c -o build/temp.linux-x86_64-2.5/numpy/core/src/multiarraymodule.o" failed with exit status 1
removing /u/vento0/myeates/tmp/tmpLMMu5C
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