Python-Dev January 2007

python-dev@python.org

82 participants
107 discussions

by Rotem Yaari

Hello everyone! We have been encountering several deadlocks in a threaded Python application which calls subprocess.Popen (i.e. fork()) in some of its threads. This has occurred on Python 2.4.1 on a 2.4.27 Linux kernel. Preliminary analysis of the hang shows that the child process blocks upon entering the execvp function, in which the import_lock is acquired due to the following line: def _ execvpe(file, args, env=None): from errno import ENOENT, ENOTDIR ... It is known that when forking from a pthreaded application, acquisition attempts on locks which were already locked by other threads while fork() was called will deadlock. Due to these oddities we were wondering if it would be better to extract the above import line from the execvpe call, to prevent lock acquisition attempts in such cases. Another workaround could be re-assigning a new lock to import_lock (such a thing is done with the global interpreter lock) at PyOS_AfterFork or pthread_atfork. We'd appreciate any opinions you might have on the subject. Thanks in advance, Yair and Rotem

11 years, 7 months

Re: subprocess and EINTR errnos

by Peter Astrand

On Wed, 10 Nov 2004, John P Speno wrote: Hi, sorry for the delayed response. > While using subprocess (aka popen5), I came across one potential gotcha. I've had > exceptions ending like this: > > File "test.py", line 5, in test > cmd = popen5.Popen(args, stdout=PIPE) > File "popen5.py", line 577, in __init__ > data = os.read(errpipe_read, 1048576) # Exceptions limited to 1 MB > OSError: [Errno 4] Interrupted system call > > (on Solaris 9) > > Would it make sense for subprocess to use a more robust read() function > which can handle these cases, i.e. when the parent's read on the pipe > to the child's stderr is interrupted by a system call, and returns EINTR? > I imagine it could catch EINTR and EAGAIN and retry the failed read(). I assume you are using signals in your application? The os.read above is not the only system call that can fail with EINTR. subprocess.py is full of other system calls that can fail, and I suspect that many other Python modules are as well. I've made a patch (attached) to subprocess.py (and test_subprocess.py) that should guard against EINTR, but I haven't committed it yet. It's quite large. Are Python modules supposed to handle EINTR? Why not let the C code handle this? Or, perhaps the signal module should provide a sigaction function, so that users can use SA_RESTART. Index: subprocess.py =================================================================== RCS file: /cvsroot/python/python/dist/src/Lib/subprocess.py,v retrieving revision 1.8 diff -u -r1.8 subprocess.py --- subprocess.py 7 Nov 2004 14:30:34 -0000 1.8 +++ subprocess.py 17 Nov 2004 19:42:30 -0000 @@ -888,6 +888,50 @@ pass + def _read_no_intr(self, fd, buffersize): + """Like os.read, but retries on EINTR""" + while True: + try: + return os.read(fd, buffersize) + except OSError, e: + if e.errno == errno.EINTR: + continue + else: + raise + + + def _read_all(self, fd, buffersize): + """Like os.read, but retries on EINTR, and reads until EOF""" + all = "" + while True: + data = self._read_no_intr(fd, buffersize) + all += data + if data == "": + return all + + + def _write_no_intr(self, fd, s): + """Like os.write, but retries on EINTR""" + while True: + try: + return os.write(fd, s) + except OSError, e: + if e.errno == errno.EINTR: + continue + else: + raise + + def _waitpid_no_intr(self, pid, options): + """Like os.waitpid, but retries on EINTR""" + while True: + try: + return os.waitpid(pid, options) + except OSError, e: + if e.errno == errno.EINTR: + continue + else: + raise + def _execute_child(self, args, executable, preexec_fn, close_fds, cwd, env, universal_newlines, startupinfo, creationflags, shell, @@ -963,7 +1007,7 @@ exc_value, tb) exc_value.child_traceback = ''.join(exc_lines) - os.write(errpipe_write, pickle.dumps(exc_value)) + self._write_no_intr(errpipe_write, pickle.dumps(exc_value)) # This exitcode won't be reported to applications, so it # really doesn't matter what we return. @@ -979,7 +1023,7 @@ os.close(errwrite) # Wait for exec to fail or succeed; possibly raising exception - data = os.read(errpipe_read, 1048576) # Exceptions limited to 1 MB + data = self._read_all(errpipe_read, 1048576) # Exceptions limited to 1 MB os.close(errpipe_read) if data != "": child_exception = pickle.loads(data) @@ -1003,7 +1047,7 @@ attribute.""" if self.returncode == None: try: - pid, sts = os.waitpid(self.pid, os.WNOHANG) + pid, sts = self._waitpid_no_intr(self.pid, os.WNOHANG) if pid == self.pid: self._handle_exitstatus(sts) except os.error: @@ -1015,7 +1059,7 @@ """Wait for child process to terminate. Returns returncode attribute.""" if self.returncode == None: - pid, sts = os.waitpid(self.pid, 0) + pid, sts = self._waitpid_no_intr(self.pid, 0) self._handle_exitstatus(sts) return self.returncode @@ -1049,27 +1093,33 @@ stderr = [] while read_set or write_set: - rlist, wlist, xlist = select.select(read_set, write_set, []) + try: + rlist, wlist, xlist = select.select(read_set, write_set, []) + except select.error, e: + if e[0] == errno.EINTR: + continue + else: + raise if self.stdin in wlist: # When select has indicated that the file is writable, # we can write up to PIPE_BUF bytes without risk # blocking. POSIX defines PIPE_BUF >= 512 - bytes_written = os.write(self.stdin.fileno(), input[:512]) + bytes_written = self._write_no_intr(self.stdin.fileno(), input[:512]) input = input[bytes_written:] if not input: self.stdin.close() write_set.remove(self.stdin) if self.stdout in rlist: - data = os.read(self.stdout.fileno(), 1024) + data = self._read_no_intr(self.stdout.fileno(), 1024) if data == "": self.stdout.close() read_set.remove(self.stdout) stdout.append(data) if self.stderr in rlist: - data = os.read(self.stderr.fileno(), 1024) + data = self._read_no_intr(self.stderr.fileno(), 1024) if data == "": self.stderr.close() read_set.remove(self.stderr) Index: test/test_subprocess.py =================================================================== RCS file: /cvsroot/python/python/dist/src/Lib/test/test_subprocess.py,v retrieving revision 1.14 diff -u -r1.14 test_subprocess.py --- test/test_subprocess.py 12 Nov 2004 15:51:48 -0000 1.14 +++ test/test_subprocess.py 17 Nov 2004 19:42:30 -0000 @@ -7,6 +7,7 @@ import tempfile import time import re +import errno mswindows = (sys.platform == "win32") @@ -35,6 +36,16 @@ fname = tempfile.mktemp() return os.open(fname, os.O_RDWR|os.O_CREAT), fname + def read_no_intr(self, obj): + while True: + try: + return obj.read() + except IOError, e: + if e.errno == errno.EINTR: + continue + else: + raise + # # Generic tests # @@ -123,7 +134,7 @@ p = subprocess.Popen([sys.executable, "-c", 'import sys; sys.stdout.write("orange")'], stdout=subprocess.PIPE) - self.assertEqual(p.stdout.read(), "orange") + self.assertEqual(self.read_no_intr(p.stdout), "orange") def test_stdout_filedes(self): # stdout is set to open file descriptor @@ -151,7 +162,7 @@ p = subprocess.Popen([sys.executable, "-c", 'import sys; sys.stderr.write("strawberry")'], stderr=subprocess.PIPE) - self.assertEqual(remove_stderr_debug_decorations(p.stderr.read()), + self.assertEqual(remove_stderr_debug_decorations(self.read_no_intr(p.stderr)), "strawberry") def test_stderr_filedes(self): @@ -186,7 +197,7 @@ 'sys.stderr.write("orange")'], stdout=subprocess.PIPE, stderr=subprocess.STDOUT) - output = p.stdout.read() + output = self.read_no_intr(p.stdout) stripped = remove_stderr_debug_decorations(output) self.assertEqual(stripped, "appleorange") @@ -220,7 +231,7 @@ stdout=subprocess.PIPE, cwd=tmpdir) normcase = os.path.normcase - self.assertEqual(normcase(p.stdout.read()), normcase(tmpdir)) + self.assertEqual(normcase(self.read_no_intr(p.stdout)), normcase(tmpdir)) def test_env(self): newenv = os.environ.copy() @@ -230,7 +241,7 @@ 'sys.stdout.write(os.getenv("FRUIT"))'], stdout=subprocess.PIPE, env=newenv) - self.assertEqual(p.stdout.read(), "orange") + self.assertEqual(self.read_no_intr(p.stdout), "orange") def test_communicate(self): p = subprocess.Popen([sys.executable, "-c", @@ -305,7 +316,8 @@ 'sys.stdout.write("\\nline6");'], stdout=subprocess.PIPE, universal_newlines=1) - stdout = p.stdout.read() + + stdout = self.read_no_intr(p.stdout) if hasattr(open, 'newlines'): # Interpreter with universal newline support self.assertEqual(stdout, @@ -343,7 +355,7 @@ def test_no_leaking(self): # Make sure we leak no resources - max_handles = 1026 # too much for most UNIX systems + max_handles = 10 # too much for most UNIX systems if mswindows: max_handles = 65 # a full test is too slow on Windows for i in range(max_handles): @@ -424,7 +436,7 @@ 'sys.stdout.write(os.getenv("FRUIT"))'], stdout=subprocess.PIPE, preexec_fn=lambda: os.putenv("FRUIT", "apple")) - self.assertEqual(p.stdout.read(), "apple") + self.assertEqual(self.read_no_intr(p.stdout), "apple") def test_args_string(self): # args is a string @@ -457,7 +469,7 @@ p = subprocess.Popen(["echo $FRUIT"], shell=1, stdout=subprocess.PIPE, env=newenv) - self.assertEqual(p.stdout.read().strip(), "apple") + self.assertEqual(self.read_no_intr(p.stdout).strip(), "apple") def test_shell_string(self): # Run command through the shell (string) @@ -466,7 +478,7 @@ p = subprocess.Popen("echo $FRUIT", shell=1, stdout=subprocess.PIPE, env=newenv) - self.assertEqual(p.stdout.read().strip(), "apple") + self.assertEqual(self.read_no_intr(p.stdout).strip(), "apple") def test_call_string(self): # call() function with string argument on UNIX @@ -525,7 +537,7 @@ p = subprocess.Popen(["set"], shell=1, stdout=subprocess.PIPE, env=newenv) - self.assertNotEqual(p.stdout.read().find("physalis"), -1) + self.assertNotEqual(self.read_no_intr(p.stdout).find("physalis"), -1) def test_shell_string(self): # Run command through the shell (string) @@ -534,7 +546,7 @@ p = subprocess.Popen("set", shell=1, stdout=subprocess.PIPE, env=newenv) - self.assertNotEqual(p.stdout.read().find("physalis"), -1) + self.assertNotEqual(self.read_no_intr(p.stdout).find("physalis"), -1) def test_call_string(self): # call() function with string argument on Windows /Peter Åstrand <astrand(a)lysator.liu.se>

11 years, 9 months

Python + Java Integration

by Chas Emerick

This may seem like it's coming out of left field for a minute, but bear with me. There is no doubt that Ruby's success is a concern for anyone who sees it as diminishing Python's status. One of the reasons for Ruby's success is certainly the notion (originally advocated by Bruce Tate, if I'm not mistaken) that it is the "next Java" -- the language and environment that mainstream Java developers are, or will, look to as a natural next step. One thing that would help Python in this "debate" (or, perhaps simply put it in the running, at least as a "next Java" candidate) would be if Python had an easier migration path for Java developers that currently rely upon various third-party libraries. The wealth of third-party libraries available for Java has always been one of its great strengths. Ergo, if Python had an easy-to-use, recommended way to use those libraries within the Python environment, that would be a significant advantage to present to Java developers and those who would choose Ruby over Java. Platform compatibility is always a huge motivator for those looking to migrate or upgrade. In that vein, I would point to JPype (http://jpype.sourceforge.net). JPype is a module that gives "python programs full access to java class libraries". My suggestion would be to either: (a) include JPype in the standard library, or barring that, (b) make a very strong push to support JPype (a) might be difficult or cumbersome technically, as JPype does need to build against Java headers, which may or may not be possible given the way that Python is distributed, etc. However, (b) is very feasible. I can't really say what "supporting JPype" means exactly -- maybe GvR and/or other heavyweights in the Python community make public statements regarding its existence and functionality, maybe JPype gets a strong mention or placement on python.org....all those details are obviously not up to me, and I don't know the workings of the "official" Python organizations enough to make serious suggestions. Regardless of the form of support, I think raising people's awareness of JPype and what it adds to the Python environment would be a Good Thing (tm). For our part, we've used JPype to make PDFTextStream (our previously Java-only PDF text extraction library) available and supported for Python. You can read some about it here: http://snowtide.com/PDFTextStream.Python And I've blogged about how PDFTextStream.Python came about, and how we worked with Steve Ménard, the maintainer of JPype, to make it all happen (watch out for this URL wrapping): http://blog.snowtide.com/2006/08/21/working-together-pythonjava-open- sourcecommercial Cheers, Chas Emerick Founder, Snowtide Informatics Systems Enterprise-class PDF content extraction cemerick(a)snowtide.com http://snowtide.com | +1 413.519.6365

12 years, 4 months

Re: [Python-Dev] [Python-checkins] r45510 - python/trunk/Lib/pkgutil.py python/trunk/Lib/pydoc.py

by M.-A. Lemburg

Phillip.eby wrote: > Author: phillip.eby > Date: Tue Apr 18 02:59:55 2006 > New Revision: 45510 > > Modified: > python/trunk/Lib/pkgutil.py > python/trunk/Lib/pydoc.py > Log: > Second phase of refactoring for runpy, pkgutil, pydoc, and setuptools > to share common PEP 302 support code, as described here: > > http://mail.python.org/pipermail/python-dev/2006-April/063724.html Shouldn't this new module be named "pkglib" to be in line with the naming scheme used for all the other utility modules, e.g. httplib, imaplib, poplib, etc. ? > pydoc now supports PEP 302 importers, by way of utility functions in > pkgutil, such as 'walk_packages()'. It will properly document > modules that are in zip files, and is backward compatible to Python > 2.3 (setuptools installs for Python <2.5 will bundle it so pydoc > doesn't break when used with eggs.) Are you saying that the installation of setuptools in Python 2.3 and 2.4 will then overwrite the standard pydoc included with those versions ? I think that's the wrong way to go if not made an explicit option in the installation process or a separate installation altogether. I bothered by the fact that installing setuptools actually changes the standard Python installation by either overriding stdlib modules or monkey-patching them at setuptools import time. > What has not changed is that pydoc command line options do not support > zip paths or other importer paths, and the webserver index does not > support sys.meta_path. Those are probably okay as limitations. > > Tasks remaining: write docs and Misc/NEWS for pkgutil/pydoc changes, > and update setuptools to use pkgutil wherever possible, then add it > to the stdlib. Add setuptools to the stdlib ? I'm still missing the PEP for this along with the needed discussion touching among other things, the change of the distutils standard "python setup.py install" to install an egg instead of a site package. -- Marc-Andre Lemburg eGenix.com Professional Python Services directly from the Source (#1, Apr 18 2006) >>> Python/Zope Consulting and Support ... http://www.egenix.com/ >>> mxODBC.Zope.Database.Adapter ... http://zope.egenix.com/ >>> mxODBC, mxDateTime, mxTextTools ... http://python.egenix.com/ ________________________________________________________________________ ::: Try mxODBC.Zope.DA for Windows,Linux,Solaris,FreeBSD for free ! ::::

13 years

Making builtins more efficient

by Steven Elliott

I'm interested in how builtins could be more efficient. I've read over some of the PEPs having to do with making global variables more efficient (search for "global"): http://www.python.org/doc/essays/pepparade.html But I think the problem can be simplified by focusing strictly on builtins. One of my assumptions is that only a small fractions of modules override the default builtins with something like: import mybuiltins __builtins__ = mybuiltins As you probably know each access of a builtin requires two hash table lookups. First, the builtin is not found in the list of globals. It is then found in the list of builtins. Why not have a means of referencing the default builtins with some sort of index the way the LOAD_FAST op code currently works? In other words, by default each module gets the default set of builtins indexed (where the index indexes into an array) in a certain order. The version stored in the pyc file would be bumped each time the set of default builtins is changed. I don't have very strong feelings whether things like True = (1 == 1) would be a syntax error, but assigning to a builtin could just do the equivalent of STORE_FAST. I also don't have very strong feelings about whether the array of default builtins would be shared between modules. To simulate the current behavior where attempting to assign to builtin actually alters that module's global hashtable a separate array of builtins could be used for each module. As to assigning to __builtins__ (like I mentioned at the beginning of this post) perhaps it could assign to the builtin array for those items that have a name that matches a default builtin (such as "True" or "len"). Those items that don't match a default builtin would just create global variables. Perhaps what I'm suggesting isn't feasible for reasons that have already been discussed. But it seems like it should be possible to make "while True" as efficient as "while 1". -- ----------------------------------------------------------------------- | Steven Elliott | selliott4(a)austin.rr.com | -----------------------------------------------------------------------

14 years

Renaming Include/object.h

by "Martin v. Löwis"

In #1626545, Anton Tropashko requests that object.h should be renamed, because it causes conflicts with other software. I would like to comply with this requests for 2.6, assuming there shouldn't be many problems with existing software as object.h shouldn't be included directly, anyway. What do you think? Regards, Martin

14 years, 1 month

cross-compile patches

by Han-Wen Nienhuys

Hello all, A couple of weeks ago, I posted a collection of patches to Python 2.5 on SF.net (#1597850) that enable python to be cross-compiled using standard tools (ie. configure and environment settings), among others on Linux/Darwin to Mingw32/Linux/Freebsd. In response to Martin v Loewis' initial reply we have sent in contributor agreements, but nothing else has happened so far. I was wondering whether there is any way for me to speed up the review process. For example, I could post each patch separately and/or prepare patches to Python SVN. -- Han-Wen Nienhuys - hanwen(a)xs4all.nl - http://www.xs4all.nl/~hanwen

14 years, 1 month

GeneratorExit inheriting from Exception

by Nick Coghlan

Should GeneratorExit inherit from Exception or BaseException? Currently, a generator that catches Exception and continues on to yield another value can't be closed properly (you get a runtime error pointing out that the generator ignored GeneratorExit). The only decent reference I could find to it in the old PEP 348/352 discussions is Guido writing [1]: > when GeneratorExit or StopIteration > reach the outer level of an app, it's a bug like all the others that > bare 'except:' WANTS to catch. (at that point in the conversation, I believe bare except was considered the equivalent of "except Exception:") While I agree with what Guido says about GeneratorExit being a bug if it reaches the outer level of an app, it seems like a bit of a trap that a correctly written generator can't write "except Exception:" without preceding it with an "except GeneratorExit:" that reraises the exception. Isn't that exactly the idiom we're trying to get rid of for SystemExit and KeyboardInterrupt? Regards, Nick. [1] http://mail.python.org/pipermail/python-dev/2005-August/055173.html -- Nick Coghlan | ncoghlan(a)gmail.com | Brisbane, Australia --------------------------------------------------------------- http://www.boredomandlaziness.org

14 years, 1 month

Python's C interface for types

by Jim Jewett

Nick Maclaren wrote: > Martin v. Löwis wrote: >> It may be a bit problematic to implement, but I think a clean >> specification is possible. If a and b are numbers, and a==b, >> then hash(a)==hash(b). You don't even need that much complication. If a==b, then hash(a) == hash(b) If you have to break this, then at least one (preferably both) of (a,b) must be unhashable, so that it won't get used as a dict key. Hashing is only ever meaningful as a shortcut to quickly show that two objects are *not* equal. >> I'm not sure whether "approximately 5.0" >> equals 5 or not: if it does, it should hash the same as 5, >> if it doesn't, it may or may not hash the same (whatever is >> easier to implement). agreed. >> For 0: hash(+0.0)==hash(-0.0)==hash(0)=hash(0L)=0 > Unfortunately, that assumes that equality is transitive. No, but the (transitively closed set of equivalent objects) must have the same hash. If >>> myfloat(5.0) != 5.0 True then you could just return 47 as the hash. It might not be terribly efficient, but it would work. If >>> myfloat_exact(5.0) == 5.0 == myfloat_approx(5.0) != myfloat_exact(5.0) then at least one of (myfloat_exact, myfloat_approx) needs to be unhashable, so that it can't be used as a dictionary key. > let us say that I am implementing a special function and want to > distinguish -0.0 and +0.0. Why can't I use a dictionary? Because they are equal. They aren't identical, but they are equal. > >>> a = float("+0.0") > >>> b = float("-0.0") > >>> print a, b > 0.0 -0.0 With the standard windows distribution, I get just 0.0 0.0 > No, I don't have an answer. You are damned if you do, and damned > if you don't. It is an insoluble problem, and CURRENTLY doesn't > justify two hashing mechanisms (i.e. ANY difference and EQUALITY > difference). You want something in between "__eq__" and "is". (a.identical(b) ?) Hashing is weaker than either. >>> hash ("JimJ") == hash (2010274390) True -jJ

14 years, 2 months

Happy Birthday, Guido!

by Aahz

Thanks again for giving me something fun to do with my life. ;-) -- Aahz (aahz(a)pythoncraft.com) <*> http://www.pythoncraft.com/ "I disrespectfully agree." --SJM

14 years, 2 months

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Python-Dev January 2007